FFCP PHASE1:Hg19::chr11:108800264..108800294,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1662 | |EntrezGene=1662 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2735 | |HGNC=2735 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000534221_5end | |association_with_transcript=18bp_to_ENST00000534221_5end | ||
|cluster_id=chr11:108800264..108800294,+ | |||
|coexpression_cluster_id=C2093 | |coexpression_cluster_id=C2093 | ||
|description=CAGE_peak_3_at_DDX10_5end | |description=CAGE_peak_3_at_DDX10_5end | ||
|id=chr11:108800264..108800294,+ | |id=chr11:108800264..108800294,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.99e-19!180;CL:0000548!9.49e-17!679;CL:0000004!9.49e-17!679;CL:0000255!9.49e-17!679;CL:0000012!2.42e-16!682;CL:0002371!2.09e-14!591;CL:0000144!1.30e-13!625;CL:0000057!2.25e-12!75;CL:0002620!1.37e-11!23;CL:0000003!2.72e-11!722;CL:0000222!3.37e-10!119;CL:0000220!8.00e-10!246;CL:0002321!1.59e-09!248;CL:0000680!2.62e-09!57;CL:0000056!2.62e-09!57;CL:0000355!2.62e-09!57;CL:0000183!1.51e-08!59;CL:0000192!1.71e-08!42;CL:0000514!1.71e-08!42;CL:0000187!4.68e-08!54;CL:0000359!2.85e-07!32;CL:0000393!7.15e-07!60;CL:0000211!7.15e-07!60 | |ontology_enrichment_celltype=CL:0000055!2.99e-19!180;CL:0000548!9.49e-17!679;CL:0000004!9.49e-17!679;CL:0000255!9.49e-17!679;CL:0000012!2.42e-16!682;CL:0002371!2.09e-14!591;CL:0000144!1.30e-13!625;CL:0000057!2.25e-12!75;CL:0002620!1.37e-11!23;CL:0000003!2.72e-11!722;CL:0000222!3.37e-10!119;CL:0000220!8.00e-10!246;CL:0002321!1.59e-09!248;CL:0000680!2.62e-09!57;CL:0000056!2.62e-09!57;CL:0000355!2.62e-09!57;CL:0000183!1.51e-08!59;CL:0000192!1.71e-08!42;CL:0000514!1.71e-08!42;CL:0000187!4.68e-08!54;CL:0000359!2.85e-07!32;CL:0000393!7.15e-07!60;CL:0000211!7.15e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.43e-09;32!CL:0000192;1.81e-08;43!CL:0002620;2.08e-08;23!CL:0002595;4.45e-08;5!CL:0002368;5.58e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.27e-10,43;CL:0000514,1.27e-10,43;CL:0000359,5.41e-10,32;CL:0000680,4.04e-09,58;CL:0000056,4.04e-09,58;CL:0000355,4.04e-09,58;CL:0000057,1.17e-08,76;CL:0002620,1.59e-08,23;CL:0002595,4.69e-08,5;CL:0000187,6.02e-08,55;CL:0000222,9.41e-08,121;CL:0002368,5.41e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000514;1.81e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;5.01e-09;5!DOID:450;5.01e-09;5!DOID:66;5.01e-09;5!DOID:423;5.01e-09;5!DOID:0080000;5.01e-09;5!DOID:11722;5.01e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.79e-09,5;DOID:450,3.79e-09,5;DOID:66,3.79e-09,5;DOID:423,3.79e-09,5;DOID:0080000,3.79e-09,5;DOID:11722,3.79e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!8.47e-12!79;UBERON:0007798!8.47e-12!79;UBERON:0004573!6.69e-10!33;UBERON:0004571!6.69e-10!33;UBERON:0001637!2.85e-09!42;UBERON:0003509!2.85e-09!42;UBERON:0004572!2.85e-09!42;UBERON:0000914!2.96e-09!83;UBERON:0002329!2.96e-09!83;UBERON:0003077!2.96e-09!83;UBERON:0003059!2.96e-09!83;UBERON:0007282!2.96e-09!83;UBERON:0009618!2.96e-09!83;UBERON:0007285!2.96e-09!83;UBERON:0000490!3.41e-09!138;UBERON:0004290!2.25e-08!70;UBERON:0001134!5.35e-08!61;UBERON:0002036!5.35e-08!61;UBERON:0003082!5.35e-08!61;UBERON:0000055!5.95e-08!69;UBERON:0004535!8.25e-08!110;UBERON:0005256!1.01e-07!143;UBERON:0001981!1.98e-07!60;UBERON:0007500!1.98e-07!60;UBERON:0004537!1.98e-07!60;UBERON:0006965!1.98e-07!60;UBERON:0002385!2.03e-07!63;UBERON:0001015!2.03e-07!63;UBERON:0000383!2.03e-07!63;UBERON:0000486!2.58e-07!82;UBERON:0001009!3.19e-07!113 | |ontology_enrichment_uberon=UBERON:0002049!8.47e-12!79;UBERON:0007798!8.47e-12!79;UBERON:0004573!6.69e-10!33;UBERON:0004571!6.69e-10!33;UBERON:0001637!2.85e-09!42;UBERON:0003509!2.85e-09!42;UBERON:0004572!2.85e-09!42;UBERON:0000914!2.96e-09!83;UBERON:0002329!2.96e-09!83;UBERON:0003077!2.96e-09!83;UBERON:0003059!2.96e-09!83;UBERON:0007282!2.96e-09!83;UBERON:0009618!2.96e-09!83;UBERON:0007285!2.96e-09!83;UBERON:0000490!3.41e-09!138;UBERON:0004290!2.25e-08!70;UBERON:0001134!5.35e-08!61;UBERON:0002036!5.35e-08!61;UBERON:0003082!5.35e-08!61;UBERON:0000055!5.95e-08!69;UBERON:0004535!8.25e-08!110;UBERON:0005256!1.01e-07!143;UBERON:0001981!1.98e-07!60;UBERON:0007500!1.98e-07!60;UBERON:0004537!1.98e-07!60;UBERON:0006965!1.98e-07!60;UBERON:0002385!2.03e-07!63;UBERON:0001015!2.03e-07!63;UBERON:0000383!2.03e-07!63;UBERON:0000486!2.58e-07!82;UBERON:0001009!3.19e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.27e-11;33!UBERON:0004571;9.27e-11;33!UBERON:0003834;4.45e-08;5!UBERON:0001533;4.45e-08;5!UBERON:0001637;7.50e-08;42!UBERON:0003509;7.50e-08;42!UBERON:0004572;7.50e-08;42!UBERON:0003513;1.16e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,2.10e-12,33;UBERON:0004571,2.10e-12,33;UBERON:0001637,9.17e-11,42;UBERON:0003509,9.17e-11,42;UBERON:0004572,9.17e-11,42;UBERON:0002049,1.74e-08,78;UBERON:0007798,1.74e-08,78;UBERON:0001134,3.86e-08,62;UBERON:0002036,3.86e-08,62;UBERON:0003082,3.86e-08,62;UBERON:0003834,4.69e-08,5;UBERON:0001533,4.69e-08,5;UBERON:0002385,1.06e-07,64;UBERON:0001015,1.06e-07,64;UBERON:0000383,1.06e-07,64;UBERON:0003513,1.25e-07,7;UBERON:0004535,1.55e-07,109;UBERON:0001009,4.06e-07,112;UBERON:0004872,5.67e-07,83;UBERON:0007500,7.01e-07,59;UBERON:0001981,7.01e-07,59;UBERON:0004537,7.01e-07,59;UBERON:0006965,7.01e-07,59 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,1.96587149201207,0,0,0,8.29234564832312,4.30816588446291,0,0,0.730310090387373,0,0.984968464614303,0.612002073732759,0,0,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0.697287110717054,0,0.929119112685311,0,0.256160706529101,1.41889337933151,0.344745680736619,0,0,0.376484679085209,0.818718450173537,0.449446968890169,0.306083892370903,2.24650318953266,1.27867425159808,0.329851300186716,0.199463657621632,0,4.35313857942876,8.5107783703671,7.4738669879469,0.75374599577023,0,0.65156653411535,1.81619850790011,3.68277635987565,3.79754864929061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,1.88300474649071,0,0,0.283604451492204,0,0.263504357079378,0,0,0,0,0,0,0,0,0,3.57772333260069,1.72046919021225,0.347140501607594,0.56530794192401,1.25849830862972,1.37559020970034,0.835979866147242,0.516833518338658,1.06729878806013,0,0.402829317109147,0,0.24406205754817,0,0,0,0.673588117878509,0,0,0,0.183201743930407,0,0,0,0,0.25326102332916,2.25095607382472,0.286836620748814,0,0,0,0,1.24484414159907,2.42479209725439,1.63461903113459,1.66493170409425,8.64263886719998,14.7622502055292,0,0.570471821544449,0.298897361103602,0.939475989150119,0.809364721840658,0.280901613404497,11.2284794190191,0,3.71972812232756,1.18800285728205,0.247266929278557,0,0,0.505008341862199,0.625592599359821,6.09541054065202,0,0,0.300476117813194,0.567160915800105,5.38168907066586,20.9286241042196,1.90738711043606,9.60291507470087,14.8395642103352,2.31876486041066,1.8611685633159,0.506328996723799,0.389748020644795,6.31084435610286,16.1087322624024,0.484938170456436,15.620422070731,27.0015623250076,4.74769658469365,0,0,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,1.02940686179115,0,0,0.402115889646523,0.462942225792648,4.88712457965487,3.11980435583874,0,3.4779121492523,0.469634776943287,0.721832238805369,0.462985512576611,0.761016608938393,0,0,0,0,0,0,0,0.141775097242386,0.447792613514241,2.3250715081117,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3160597597732,0,21.7081326030012,0.129271715757778,0,0.845302752556,0,0,0.514414748524284,0,0.266422179016099,13.0109974228914,0,0,0,10.3063665135338,1.58390374586686,0,0,0,0,0,0,0,0,1.42636905040718,4.48822050669496,3.28762116080613,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0.502548796003046,0,0,0,0,0.858840442033979,1.00034104211935,19.531081706381,0,0,0.157702415033935,0,0.300946099727719,0,0,2.65690239414175,1.65932251687533,0,0.783204629850962,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.164254312027618,6.75030757938707,0.116210378459959,0,0.200506470303285,9.66850383826911,2.75554675595056,0.182091168006717,0.655622074797121,0,0.231046011313244,0,0,0,0,1.70093705276516,1.0795795805107,0,0.541892875087706,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0.290012154876366,0.308097234229289,0.614014698904518,0,0.107420244868274,0,0.170453254832202,0,9.91709492165869,4.03599141466723,0.765676274967505,8.39609581101064,8.36721988735114,3.77774816196768,6.2733354314454,6.16067160352178,2.66153015158511,1.73986598415015,0,1.5743737541619,1.48863347743867,0.632758849437452,0.190630193923825,0.255897791311334,0,2.22742273548156,0,0.899362287916574,3.0199073270966,3.65218447271628,1.61745985258653,9.5106192703805,1.26377536871694,0,5.60541026151954,2.11300293513511,0,12.8678943077879,0,4.96228809191512,1.32687795048244,4.82295973779139,0,0,0,0,0,0,0.0982490410131212,0,1.06428319221179,0.422215270595328,0,2.27683904259429,3.49934720244983,6.92799211623687,3.35151137767894,1.08890984861323,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,11.4540924402413,0,0,0.718946809178615,25.2419856292609,0,0,0,2.22273980289274,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,1.45668227720456,0,0,0,0,0,0,1.99396161812156,0.330991955875499,0.941798755221676,0,0,0.277349346026277,0,0,0,0,0,0,0,0.164230914106418,0,0,0,0.137041924646751,0.19871461170299,0,0,0.881747022766871,0,0,0.144090417154106,0,0,2.0167671718341,0,0.235694034616795,0.135904206073614,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0.0674035438541849,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,4.84075816198681,0,0,0,0,0,8.64221491201268,4.57222304153173,0,1.06720276974141,21.1281147013923,0.113312091520126,0,0,0,0,28.05824141303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0.74988244777264,0,0,6.11691131215246,0,0,0.597019211547496,1.16856654923612,0,0.568209015825267,0.50313580350515,0.889811221596536,30.4357290967908,0,2.02068360757615,1.92211694986524,1.27437413730962,2.24901556081802,0.621051827505038,7.464711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| ||
|short_description=p3@DDX10 | |short_description=p3@DDX10 | ||
}} | }} |
Latest revision as of 00:17, 25 September 2015
Short description: | p3@DDX10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DDX10_5end |
Coexpression cluster: | C2093_mesenchymal_mucinous_bile_Fibroblast_lung_Smooth_liposarcoma |
Association with transcript: | 18bp_to_ENST00000534221_5end |
EntrezGene: | DDX10 |
HGNC: | 2735 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.27e-10 | 43 |
smooth muscle myoblast | 1.27e-10 | 43 |
vascular associated smooth muscle cell | 5.41e-10 | 32 |
muscle precursor cell | 4.04e-09 | 58 |
myoblast | 4.04e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.04e-09 | 58 |
fibroblast | 1.17e-08 | 76 |
skin fibroblast | 1.59e-08 | 23 |
smooth muscle cell of the subclavian artery | 4.69e-08 | 5 |
muscle cell | 6.02e-08 | 55 |
mesodermal cell | 9.41e-08 | 121 |
respiratory epithelial cell | 5.41e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 2.10e-12 | 33 |
systemic arterial system | 2.10e-12 | 33 |
artery | 9.17e-11 | 42 |
arterial blood vessel | 9.17e-11 | 42 |
arterial system | 9.17e-11 | 42 |
vasculature | 1.74e-08 | 78 |
vascular system | 1.74e-08 | 78 |
skeletal muscle tissue | 3.86e-08 | 62 |
striated muscle tissue | 3.86e-08 | 62 |
myotome | 3.86e-08 | 62 |
thoracic segment blood vessel | 4.69e-08 | 5 |
subclavian artery | 4.69e-08 | 5 |
muscle tissue | 1.06e-07 | 64 |
musculature | 1.06e-07 | 64 |
musculature of body | 1.06e-07 | 64 |
trunk blood vessel | 1.25e-07 | 7 |
cardiovascular system | 1.55e-07 | 109 |
circulatory system | 4.06e-07 | 112 |
splanchnic layer of lateral plate mesoderm | 5.67e-07 | 83 |
epithelial tube open at both ends | 7.01e-07 | 59 |
blood vessel | 7.01e-07 | 59 |
blood vasculature | 7.01e-07 | 59 |
vascular cord | 7.01e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.79e-09 | 5 |
myotonic disease | 3.79e-09 | 5 |
muscle tissue disease | 3.79e-09 | 5 |
myopathy | 3.79e-09 | 5 |
muscular disease | 3.79e-09 | 5 |
myotonic dystrophy | 3.79e-09 | 5 |