FFCP PHASE1:Hg19::chr11:507175..507178,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6050 | |EntrezGene=6050 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10074 | |HGNC=10074 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000528713_5end | |association_with_transcript=16bp_to_ENST00000528713_5end | ||
|cluster_id=chr11:507175..507178,- | |||
|coexpression_cluster_id=C2129 | |coexpression_cluster_id=C2129 | ||
|description=CAGE_peak_6_at_RNH1_5end | |description=CAGE_peak_6_at_RNH1_5end | ||
|id=chr11:507175..507178,- | |id=chr11:507175..507178,- | ||
|ontology_enrichment_celltype=CL:0002076!7.44e-14!43;CL:0000223!5.32e-09!59;CL:0000066!2.23e-08!254;CL:0002368!1.46e-07!13 | |ontology_enrichment_celltype=CL:0002076!7.44e-14!43;CL:0000223!5.32e-09!59;CL:0000066!2.23e-08!254;CL:0002368!1.46e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.84e-16;42!CL:0002368;1.48e-15;13!CL:0000244;1.57e-11;4!CL:0000731;1.57e-11;4!CL:0000349;3.30e-11;19!CL:0002202;6.94e-11;9!CL:0002632;6.94e-11;9!CL:0002577;3.38e-10;3!CL:0002328;1.14e-09;3!CL:0002159;7.48e-09;14!CL:0002621;1.38e-08;3!CL:0002251;2.54e-07;20!CL:0002536;3.45e-07;2!CL:0000575;3.77e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.29e-20,42;CL:0002368,1.51e-15,13;CL:0000223,1.79e-13,58;CL:0000244,1.72e-11,4;CL:0000731,1.72e-11,4;CL:0000066,2.73e-11,253;CL:0000349,3.08e-11,19;CL:0002202,6.65e-11,9;CL:0002632,6.65e-11,9;CL:0002577,3.41e-10,3;CL:0002328,1.06e-09,3;CL:0002159,7.36e-09,14;CL:0002621,1.41e-08,3;CL:0002251,2.82e-07,20;CL:0002536,3.52e-07,2;CL:0000575,3.52e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.64e-08!14;UBERON:0000158!2.64e-08!14;UBERON:0001004!6.93e-07!72 | |ontology_enrichment_uberon=UBERON:0005631!2.64e-08!14;UBERON:0000158!2.64e-08!14;UBERON:0001004!6.93e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;2.30e-12;4!UBERON:0000305;9.42e-11;7!UBERON:0000478;2.46e-10;24!UBERON:0000486;2.81e-10;12!UBERON:0005631;4.09e-10;10!UBERON:0000158;4.09e-10;10!UBERON:0004815;1.14e-09;3!UBERON:0002031;1.14e-09;3!UBERON:0000365;3.21e-09;5!UBERON:0001949;1.38e-08;3!UBERON:0007196;3.22e-08;15!UBERON:0001558;3.22e-08;15!UBERON:0005910;1.12e-07;6!UBERON:0000485;9.55e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.23e-19,14;UBERON:0000158,2.23e-19,14;UBERON:0001987,2.60e-12,4;UBERON:0004340,2.60e-12,4;UBERON:0000305,9.61e-11,7;UBERON:0000478,2.42e-10,24;UBERON:0003124,2.77e-10,7;UBERON:0004815,1.06e-09,3;UBERON:0002031,1.06e-09,3;UBERON:0004871,2.44e-09,8;UBERON:0000365,3.45e-09,5;UBERON:0004923,3.57e-09,66;UBERON:0004119,5.92e-09,160;UBERON:0000925,5.92e-09,160;UBERON:0006595,5.92e-09,160;UBERON:0001949,1.41e-08,3;UBERON:0007196,4.00e-08,15;UBERON:0001558,4.00e-08,15;UBERON:0005910,1.19e-07,6;UBERON:0004175,1.85e-07,25;UBERON:0000995,2.05e-07,21;UBERON:0005795,5.18e-07,22;UBERON:0003975,5.18e-07,22 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.281908808191942,0,0,0,2.53299878168311,0,0.522371256399677,1.22866968250754,2.79120467188971,6.334799791775,5.80287352102598,0,0,0.672325146451775,0,0,0,0,0.612002073732759,0.313454721478088,0,0,0.125542639594803,0,0,0,1.18009283054671,0,0.154816123316076,6.43594857135249,4.2168828628955,2.9580320813343,0,0,0,0,0.200544447470142,0.434021741431704,0.447830948479849,0,0,0.145398238779565,0.377875943688809,0,0,0,0.309706370895104,0,0.256160706529101,0.47296445977717,0,0,0,0.376484679085209,0.272906150057846,0,0,0.320929027076094,0,0,0.199463657621632,0.426224750532694,0,0,0,0,1.5644487552606,0.434377689410233,0,0,0,0.211255286311942,0.212604299965044,0,0,0.150176892841506,0.16072558669708,0.285012743741249,0.79566670879636,0.182664153764634,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0.289648807765598,0,0,0.255725123687061,0.361439152384566,0.50133791063589,0.579386075843295,0,0.486634870302636,0.283604451492204,0.221729397462564,0,0.261958150995425,6.9216104775583,4.82019775619758,0,0.522389211897802,0.398873881556595,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0.760272105718513,0.732186172644509,0,0,0,0.22452937262617,0,0,0,0,0,0,6.54141078213801,0.993943903390637,0.12663051166458,0.397227542439656,0,1.41867352879343,0.560677600142307,0,1.2333377420858,0,0.404132016209064,0.326923806226917,0,0,0.234321431833797,0,0,0.448346041655403,0,0,0.140450806702248,0.408308342509787,0.122834317311768,0.103325781175765,0,0.741800787835671,0,0,0,0,0,0,0.919463387397059,0.300476117813194,0.680593098960126,0.358779271377724,0.427114777637135,0,0.600182192168805,0.309157587715317,0.515281080091258,0.744467425326359,0.506328996723799,0.292311015483596,0.252433774244115,0.460249493211497,0.646584227275248,0.710019185033229,0.10075209822764,0.169560592310488,2.89891279744945,1.09098448236334,1.72082757233402,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,1.44375896333917,0.236613600079688,0,0.482022059766964,0.220587945464788,0.435758888184812,0.237270619111097,0.404493924480493,0.392442930250692,0,0,0,0.8231480226628,0,0,0,0.590789906681404,0,0.368965315629341,0.171567810298526,0.98775256867763,2.24803506515239,1.50793458617446,1.29623823221941,0,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,3.95102198979638,0.858486162094873,0,0.234004265139238,0,3.74935335947108,0.335964256397719,1.41775097242386,0.358234090811393,0.581267877027924,1.91691339582606,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0.126995788584338,0.381988425558278,0,0,0,0,0.285826432630578,0.112131084345361,0,0,0,3.57656445851882,0,0.26593811658487,0,0,0,0.266422179016099,0.714889968290738,0.542621605391443,0,0,0,0.791951872933429,0,0,0.199945982364114,0,0,0,0.958499421966331,0,0,0.289562613335158,0.410952645100767,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0.271265023699736,0.207970861530807,0.356857977594324,0,0,0,0,0,0,0.737476674166813,0.0868836144680828,0.195801157462741,0.343143423810856,0,0,0.106727557803444,13.6407407150817,14.9791895559447,13.6075631998356,0.496215615637554,0.920771839728375,0.280660094433074,0.128139149255701,0.511707249066704,0.482561763430822,1.48418066444991,0,0.355123450626254,0.246381468041427,0,0.116210378459959,0.120859449591622,1.60405176242628,0.920809889358963,0.229628896329213,0.364182336013434,0.262248829918848,0,0.15403067420883,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0.501689773854853,0.254876273045038,0,0.447749509444357,0,0,0,0,0.325378394664303,0.9273691048295,0.183138929636687,0.082509499920588,0.574265537996172,0.650060246036521,0,0.290012154876366,0.154048617114644,0,0.275673144969061,0.107420244868274,0.145016693914229,0.0852266274161009,0.0890320356467374,1.65284915360978,1.15314040419064,0.893288987462089,1.51736671283325,1.85938219718914,0.31481234683064,0,0.308033580176089,0,0,0.37064843820784,0.286249773483982,0,0.316379424718726,0.38126038784765,0.511795582622668,0,0,0.78494864019923,0.179872457583315,0,0,0.808729926293264,0,0,0,0,1.05650146756755,0.136499911407986,0.141405431953713,0,0,0,0.438450885253763,0,0,0.405820753925408,0.6196469961995,0.845086807596724,0,0.196498082026242,0,0.354761064070598,0,0.987884678879706,0.75894634753143,0,1.63577591633371,0.670302275535787,4.3556393944529,0.659006605437454,1.72202149068492,5.05414427002877,5.76459199597678,1.1486170010348,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0.980160863924127,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0.293016358543788,0,0,0,3.81991175580304,8.61197574414652,3.37876772309155,0,0,0.111308705022906,0.16480387422676,0,0.398495976502139,0,0,0.102268682502155,0,0.622079175323615,0.988551862620595,0.179021174675609,0.511572370226872,0.197286811273867,0,0,0,0.185536196323703,0,0,0.437299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| ||
|short_description=p6@RNH1 | |short_description=p6@RNH1 | ||
}} | }} |
Latest revision as of 07:09, 18 September 2015
Short description: | p6@RNH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RNH1_5end |
Coexpression cluster: | C2129_Placental_amniotic_Keratinocyte_Corneal_Gingival_Mammary_tongue |
Association with transcript: | 16bp_to_ENST00000528713_5end |
EntrezGene: | RNH1 |
HGNC: | 10074 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.29e-20 | 42 |
respiratory epithelial cell | 1.51e-15 | 13 |
endodermal cell | 1.79e-13 | 58 |
transitional epithelial cell | 1.72e-11 | 4 |
urothelial cell | 1.72e-11 | 4 |
epithelial cell | 2.73e-11 | 253 |
extraembryonic cell | 3.08e-11 | 19 |
epithelial cell of tracheobronchial tree | 6.65e-11 | 9 |
epithelial cell of lower respiratory tract | 6.65e-11 | 9 |
placental epithelial cell | 3.41e-10 | 3 |
bronchial epithelial cell | 1.06e-09 | 3 |
general ecto-epithelial cell | 7.36e-09 | 14 |
gingival epithelial cell | 1.41e-08 | 3 |
epithelial cell of alimentary canal | 2.82e-07 | 20 |
amniotic epithelial cell | 3.52e-07 | 2 |
corneal epithelial cell | 3.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.23e-19 | 14 |
membranous layer | 2.23e-19 | 14 |
placenta | 2.60e-12 | 4 |
allantois | 2.60e-12 | 4 |
amnion | 9.61e-11 | 7 |
extraembryonic structure | 2.42e-10 | 24 |
chorion | 2.77e-10 | 7 |
lower respiratory tract epithelium | 1.06e-09 | 3 |
epithelium of bronchus | 1.06e-09 | 3 |
somatic layer of lateral plate mesoderm | 2.44e-09 | 8 |
urothelium | 3.45e-09 | 5 |
organ component layer | 3.57e-09 | 66 |
endoderm-derived structure | 5.92e-09 | 160 |
endoderm | 5.92e-09 | 160 |
presumptive endoderm | 5.92e-09 | 160 |
gingival epithelium | 1.41e-08 | 3 |
tracheobronchial tree | 4.00e-08 | 15 |
lower respiratory tract | 4.00e-08 | 15 |
transitional epithelium | 1.19e-07 | 6 |
internal genitalia | 1.85e-07 | 25 |
uterus | 2.05e-07 | 21 |
embryonic uterus | 5.18e-07 | 22 |
internal female genitalia | 5.18e-07 | 22 |