FFCP PHASE1:Hg19::chr13:49550947..49550962,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22862 | |EntrezGene=22862 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20296 | |HGNC=20296 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000337156,uc001vcn.2,uc001vco.2_5end | |association_with_transcript=8bp_to_ENST00000337156,uc001vcn.2,uc001vco.2_5end | ||
|cluster_id=chr13:49550947..49550962,+ | |||
|coexpression_cluster_id=C1708 | |coexpression_cluster_id=C1708 | ||
|description=CAGE_peak_4_at_FNDC3A_5end | |description=CAGE_peak_4_at_FNDC3A_5end | ||
|id=chr13:49550947..49550962,+ | |id=chr13:49550947..49550962,+ | ||
|ontology_enrichment_celltype=CL:0000860!1.19e-14!45;CL:0002057!5.00e-13!42;CL:0002009!1.27e-08!65;CL:0000557!2.09e-08!71;CL:0002194!4.73e-08!63;CL:0000576!4.73e-08!63;CL:0000040!4.73e-08!63;CL:0000559!4.73e-08!63;CL:0000766!6.42e-08!76;CL:0002087!8.52e-08!119;CL:0000738!1.05e-07!140;CL:0002031!1.15e-07!124;CL:0000839!1.81e-07!70 | |ontology_enrichment_celltype=CL:0000860!1.19e-14!45;CL:0002057!5.00e-13!42;CL:0002009!1.27e-08!65;CL:0000557!2.09e-08!71;CL:0002194!4.73e-08!63;CL:0000576!4.73e-08!63;CL:0000040!4.73e-08!63;CL:0000559!4.73e-08!63;CL:0000766!6.42e-08!76;CL:0002087!8.52e-08!119;CL:0000738!1.05e-07!140;CL:0002031!1.15e-07!124;CL:0000839!1.81e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.12e-21;33!CL:0002057;9.12e-21;33!CL:0000473;7.10e-13;39!CL:0000234;7.10e-13;39!CL:0000576;5.97e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.76e-18,42;CL:0002057,5.76e-18,42;CL:0000473,1.92e-14,48;CL:0000234,1.92e-14,48;CL:0002009,1.76e-11,61;CL:0000766,2.38e-11,72;CL:0002194,3.67e-11,59;CL:0000576,3.67e-11,59;CL:0000040,3.67e-11,59;CL:0000559,3.67e-11,59;CL:0000557,1.49e-10,67;CL:0000839,6.16e-10,66;CL:0002031,6.64e-08,120;CL:0002087,1.76e-07,115;CL:0000738,1.86e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.39e-13;42!UBERON:0008947;1.17e-08;29 | |||
|ontology_enrichment_disease=DOID:305!7.50e-09!106;DOID:0050687!1.71e-07!143 | |ontology_enrichment_disease=DOID:305!7.50e-09!106;DOID:0050687!1.71e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.38e-11!511;UBERON:0007023!1.77e-10!115;UBERON:0001007!1.15e-09!155;UBERON:0001555!1.15e-09!155;UBERON:0007026!1.15e-09!155;UBERON:0004921!1.54e-09!129;UBERON:0004185!1.54e-09!129;UBERON:0004119!1.66e-07!169;UBERON:0000925!1.66e-07!169;UBERON:0006595!1.66e-07!169;UBERON:0001557!3.65e-07!19;UBERON:0001041!4.89e-07!98;UBERON:0000077!6.80e-07!130;UBERON:0002371!9.74e-07!80 | |ontology_enrichment_uberon=UBERON:0000062!1.38e-11!511;UBERON:0007023!1.77e-10!115;UBERON:0001007!1.15e-09!155;UBERON:0001555!1.15e-09!155;UBERON:0007026!1.15e-09!155;UBERON:0004921!1.54e-09!129;UBERON:0004185!1.54e-09!129;UBERON:0004119!1.66e-07!169;UBERON:0000925!1.66e-07!169;UBERON:0006595!1.66e-07!169;UBERON:0001557!3.65e-07!19;UBERON:0001041!4.89e-07!98;UBERON:0000077!6.80e-07!130;UBERON:0002371!9.74e-07!80 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.90e-10;9!UBERON:0001557;3.90e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,8.20e-11,118;UBERON:0001737,3.67e-10,9;UBERON:0001007,5.98e-10,145;UBERON:0001555,5.98e-10,145;UBERON:0007026,5.98e-10,145;UBERON:0002371,5.37e-09,76;UBERON:0001041,7.23e-09,87;UBERON:0001557,7.71e-09,19;UBERON:0004119,3.00e-08,160;UBERON:0000925,3.00e-08,160;UBERON:0006595,3.00e-08,160;UBERON:0001474,3.58e-08,82;UBERON:0002405,2.51e-07,93;UBERON:0004765,4.49e-07,90;UBERON:0007023,6.57e-07,114 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,1.74753097704138,0.527533956456907,0,0.331397375727916,0,0,0.730310090387373,0,0,0,0,0,0,0,0.916960868975415,0.410502947249729,0.629686250509434,1.57345710739562,0,0,0,0,0.369754010166788,0,0.995184627411951,0,1.66198622559563,0.802177789880567,0.868043482863407,0,1.29557466407592,0.257575567634187,2.32637182047304,2.64513160582167,0.970336244751265,4.88100977501938,10.6903650885675,9.91060386864331,4.60307827715441,3.58624989140741,6.14853797710322,10.6871161028352,7.74581620300591,0,5.83551252582075,9.00590295190891,12.3597916444797,7.34601341690166,15.0836642725764,9.59005688698562,0,1.99463657621632,1.70489900213078,6.67481248845743,3.40431134814684,6.22822248995575,5.52747063564835,7.82224377630302,9.77349801173025,1.81619850790011,8.83866326370155,7.59509729858123,1.05627643155971,0.212604299965044,0.209658645508376,1.68492946719743,0.450530678524519,0.48217676009124,0.570025487482497,0,0,0,1.63841583378639,0,2.56038133539904,1.20118796110804,4.02326707968138,0.661044872784862,1.90810750907073,0.569212969109448,0.587237189370939,1.14681968437569,1.32171328579026,1.68152568894461,0,1.180258620683,0,1.02800749499755,0.83593247695339,0.32592226663359,0.473447805734733,1.94826728407911,0.557052284425868,0.294605907474837,0.443067789167242,0.541607727530031,0.512365278902701,0.520237390239513,0,0,0,0.296573126324121,0.267540828089713,0,0.113309342697566,0.766440987203842,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0.201606743224732,0.534880391567015,0.144824403882799,0,0,0.12786256184353,0,0,0.289693037921647,0,0,0.189069634328136,0.665188192387692,0.175669571386252,0.654895377488563,0,0,0,0.696518949197069,1.19662164466979,0.476981248610684,0,0.371457501329565,0,0,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0,0,0,0.17859945656816,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0.134710672069688,0.326923806226917,0.151357427644931,0,0.468642863667593,0.312160076830321,0,0.298897361103602,0.117434498643765,0,0,1.02077085627447,0.122834317311768,0.723280468230358,0,0,0,0,0.168336113954066,0,0.277064115484183,0,0,0.300476117813194,0.113432183160021,0.538168907066586,0,0,0.600182192168805,0.103052529238439,0.772921620136887,0,1.5189869901714,0.584622030967192,0.252433774244115,0.276149695926898,0.484938170456436,0,0.10075209822764,0,0.773043412653187,0,0.860413786167011,0,0,0.232387885739037,0.310983165046111,0,0,0,0,0,0,0,4.8505788016336,6.40621822296786,4.57920956778616,5.73528658208448,6.972142210957,7.1181185733329,5.79774625088707,4.51309369788296,4.23221872641029,0,0,0,0,2.53510069643662,3.9313088667105,15.3605375737165,0,0.122988438543114,0.171567810298526,0,0,0.201057944823262,0.277765335475589,0.325808305310325,0,0,0.34779121492523,0.469634776943287,0,0,0,0,0,0,0,0.148631162288728,0,1.00789276919316,0.708875486211932,3.85101647622248,0.871901815541886,0.383382679165211,10.3459279958148,0.616339038092582,0.207328115540772,0.288239906833923,0.12624243342638,0.253991577168676,0,0,1.71072446022705,0,0.300343057843917,0,0,0,0,0.258543431515556,0,0,3.19125739901845,1.04007436911366,0,0,0,1.42977993658148,0.542621605391443,0,0,0.710783897485092,0,0.602878754119172,1.74306691720059,0.99972991182057,0,0,0,0,0,0,0.434343920002738,0.821905290201534,1.07436577943937,0.224170287987055,0,0,0.128343036279748,0.508189248444927,0,0,0.335032530668698,0,0,0,2.07207756718018,0.24538298343828,0,0.813795071099207,0.207970861530807,0.892144943985809,0.315404830067869,0.35142424497814,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0.413536052245775,0.431428401637234,0.960548020230999,0,0,0,0,0.153461973288062,0.280660094433074,0,0.511707249066704,0,1.48418066444991,0.154209693802656,0.355123450626254,0.410635780069046,0,0.697262270759755,0.483437798366489,1.40354529212299,0.920809889358963,0.114814448164607,0,0,0,0.308061348417659,0,0,0.527758144464379,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,23.4933506556807,0,0,0,0,0,0,0.308097234229289,0.15350367472613,0.137836572484531,0,0,0,0,0.495854746082934,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0.899362287916574,1.09814811894422,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0,1.13008116620243,0.551365343546124,0,0.438450885253763,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0,0,1.04980416073495,0.288666338176536,0,0,21.9355055809895,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0.106824071127473,0,0.490080431962063,0.371606350251437,0.144269212976445,0.853702120180969,0.159426272728822,0,0.383010740264733,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0.146508179271894,0,0.445773537109913,0,7.87856799634377,0.593929361665277,4.30024982938925,0,0.703347082052564,1.11308705022906,0,0.211125408127993,3.98495976502139,2.76283915531148,2.77126022639704,0.613612095012929,5.7849858566702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| ||
|short_description=p4@FNDC3A | |short_description=p4@FNDC3A | ||
}} | }} |
Latest revision as of 16:31, 17 September 2015
Short description: | p4@FNDC3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_FNDC3A_5end |
Coexpression cluster: | C1708_Mast_placenta_CD14_small_pituitary_non_parotid |
Association with transcript: | 8bp_to_ENST00000337156, uc001vcn.2, uc001vco.2_5end |
EntrezGene: | FNDC3A |
HGNC: | 20296 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.76e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.76e-18 | 42 |
defensive cell | 1.92e-14 | 48 |
phagocyte | 1.92e-14 | 48 |
macrophage dendritic cell progenitor | 1.76e-11 | 61 |
myeloid leukocyte | 2.38e-11 | 72 |
monopoietic cell | 3.67e-11 | 59 |
monocyte | 3.67e-11 | 59 |
monoblast | 3.67e-11 | 59 |
promonocyte | 3.67e-11 | 59 |
granulocyte monocyte progenitor cell | 1.49e-10 | 67 |
myeloid lineage restricted progenitor cell | 6.16e-10 | 66 |
hematopoietic lineage restricted progenitor cell | 6.64e-08 | 120 |
nongranular leukocyte | 1.76e-07 | 115 |
leukocyte | 1.86e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 8.20e-11 | 118 |
larynx | 3.67e-10 | 9 |
digestive system | 5.98e-10 | 145 |
digestive tract | 5.98e-10 | 145 |
primitive gut | 5.98e-10 | 145 |
bone marrow | 5.37e-09 | 76 |
foregut | 7.23e-09 | 87 |
upper respiratory tract | 7.71e-09 | 19 |
endoderm-derived structure | 3.00e-08 | 160 |
endoderm | 3.00e-08 | 160 |
presumptive endoderm | 3.00e-08 | 160 |
bone element | 3.58e-08 | 82 |
immune system | 2.51e-07 | 93 |
skeletal element | 4.49e-07 | 90 |
adult organism | 6.57e-07 | 114 |