FFCP PHASE1:Hg19::chr19:56048460..56048482,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=646643 | |EntrezGene=646643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34416 | |HGNC=34416 | ||
|TSSclassifier=strong | |||
|UniProt=P0C263 | |UniProt=P0C263 | ||
|association_with_transcript=-4bp_to_ENST00000413299_5end | |association_with_transcript=-4bp_to_ENST00000413299_5end | ||
|cluster_id=chr19:56048460..56048482,- | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_1_at_SBK2_5end | |description=CAGE_peak_1_at_SBK2_5end | ||
|id=chr19:56048460..56048482,- | |id=chr19:56048460..56048482,- | ||
|ontology_enrichment_celltype=CL:0000188!7.23e-13!9;CL:0002322!4.01e-10!5;CL:1000507!7.62e-07!12;CL:1000494!7.62e-07!12 | |ontology_enrichment_celltype=CL:0000188!7.23e-13!9;CL:0002322!4.01e-10!5;CL:1000507!7.62e-07!12;CL:1000494!7.62e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.46e-15;5!CL:0000188;2.23e-13;9!CL:0000669;9.87e-12;4!CL:0000650;6.67e-11;2!CL:1000500;6.67e-11;2!CL:1000618;6.67e-11;2!CL:1001318;6.67e-11;2!CL:0002173;6.67e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.91e-15,5;CL:0000188,2.65e-13,9;CL:0000669,8.54e-12,4;CL:0000650,5.75e-11,2;CL:1000500,5.75e-11,2;CL:1000618,5.75e-11,2;CL:1001318,5.75e-11,2;CL:0002173,5.75e-11,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003103!3.71e-10!69;UBERON:0002113!3.13e-08!27;UBERON:0003918!3.13e-08!27;UBERON:0005095!3.13e-08!27;UBERON:0007687!3.13e-08!27;UBERON:0004151!5.96e-07!3;UBERON:0009773!7.62e-07!12;UBERON:0001231!7.62e-07!12;UBERON:0004810!7.62e-07!12;UBERON:0005172!8.39e-07!55;UBERON:0005173!8.39e-07!55 | |ontology_enrichment_uberon=UBERON:0003103!3.71e-10!69;UBERON:0002113!3.13e-08!27;UBERON:0003918!3.13e-08!27;UBERON:0005095!3.13e-08!27;UBERON:0007687!3.13e-08!27;UBERON:0004151!5.96e-07!3;UBERON:0009773!7.62e-07!12;UBERON:0001231!7.62e-07!12;UBERON:0004810!7.62e-07!12;UBERON:0005172!8.39e-07!55;UBERON:0005173!8.39e-07!55 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;6.99e-14;16!UBERON:0002036;6.99e-14;16!UBERON:0003567;6.67e-11;2!UBERON:0003838;6.67e-11;2!UBERON:0003586;6.67e-11;2!UBERON:0005169;6.67e-11;2!UBERON:0002321;6.67e-11;2!UBERON:0005215;6.67e-11;2!UBERON:0002303;6.67e-11;2!UBERON:0002319;6.67e-11;2!UBERON:0000341;1.06e-10;2!UBERON:0001723;1.07e-07;3!UBERON:0001033;1.07e-07;3!UBERON:0004151;1.18e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,5.75e-11,2;UBERON:0003838,5.75e-11,2;UBERON:0003586,5.75e-11,2;UBERON:0005169,5.75e-11,2;UBERON:0002321,5.75e-11,2;UBERON:0005215,5.75e-11,2;UBERON:0002303,5.75e-11,2;UBERON:0002319,5.75e-11,2;UBERON:0000341,1.09e-10,2;UBERON:0003103,5.92e-08,68;UBERON:0001723,1.11e-07,3;UBERON:0004151,1.11e-07,3;UBERON:0001033,1.11e-07,3;UBERON:0010056,1.11e-07,3 | |||
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| ||
|short_description=p1@SBK2 | |short_description=p1@SBK2 | ||
}} | }} |
Latest revision as of 02:23, 20 September 2015
Short description: | p1@SBK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SBK2_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -4bp_to_ENST00000413299_5end |
EntrezGene: | SBK2 |
HGNC: | 34416 |
UniProt: | P0C263 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.91e-15 | 5 |
cell of skeletal muscle | 2.65e-13 | 9 |
pericyte cell | 8.54e-12 | 4 |
mesangial cell | 5.75e-11 | 2 |
kidney interstitial cell | 5.75e-11 | 2 |
juxtaglomerular complex cell | 5.75e-11 | 2 |
renal interstitial pericyte | 5.75e-11 | 2 |
extraglomerular mesangial cell | 5.75e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 5.75e-11 | 2 |
abdominal segment connective tissue | 5.75e-11 | 2 |
trunk connective tissue | 5.75e-11 | 2 |
interstitial tissue | 5.75e-11 | 2 |
extraglomerular mesangium | 5.75e-11 | 2 |
kidney interstitium | 5.75e-11 | 2 |
juxtaglomerular apparatus | 5.75e-11 | 2 |
mesangium | 5.75e-11 | 2 |
throat | 1.09e-10 | 2 |
compound organ | 5.92e-08 | 68 |
tongue | 1.11e-07 | 3 |
cardiac chamber | 1.11e-07 | 3 |
gustatory system | 1.11e-07 | 3 |
future tongue | 1.11e-07 | 3 |