FFCP PHASE1:Hg19::chr1:62675452..62675463,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:62675452..62675463,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_at_chr1:62675452..62675463,+ | |description=CAGE_peak_at_chr1:62675452..62675463,+ | ||
|id=chr1:62675452..62675463,+ | |id=chr1:62675452..62675463,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.16e-27!5;CL:0000039!2.00e-19!7;CL:0000586!2.00e-19!7;CL:0002537!4.62e-10!5;CL:0000540!3.57e-09!6;CL:0000031!3.57e-09!6;CL:0000404!3.57e-09!6;CL:0000047!5.64e-07!8 | |ontology_enrichment_celltype=CL:0002322!1.16e-27!5;CL:0000039!2.00e-19!7;CL:0000586!2.00e-19!7;CL:0002537!4.62e-10!5;CL:0000540!3.57e-09!6;CL:0000031!3.57e-09!6;CL:0000404!3.57e-09!6;CL:0000047!5.64e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.51e-61;5!CL:0000039;1.09e-28;7!CL:0000586;1.09e-28;7!CL:0002321;1.29e-20;15!CL:0000540;8.30e-20;6!CL:0000404;8.30e-20;6!CL:0000148;8.27e-12;10!CL:0000147;1.36e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.07e-61,5;CL:0000039,9.75e-29,7;CL:0000586,9.75e-29,7;CL:0000540,8.04e-20,6;CL:0000031,8.04e-20,6;CL:0000404,8.04e-20,6;CL:0000047,5.00e-15,8;CL:0000148,8.74e-12,10;CL:0000541,8.74e-12,10;CL:0000147,1.42e-08,14;CL:0000133,4.20e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.35e-20;10!UBERON:0005564;3.35e-20;10!CL:0000031;8.30e-20;6 | |||
|ontology_enrichment_disease=DOID:3095!2.05e-18!22;DOID:2994!2.05e-18!22 | |ontology_enrichment_disease=DOID:3095!2.05e-18!22;DOID:2994!2.05e-18!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;3.63e-14;22!DOID:2994;3.63e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.53e-14,22;DOID:2994,3.53e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.43e-17!14;UBERON:0000158!1.43e-17!14;UBERON:0003135!2.74e-17!11;UBERON:0000473!5.87e-17!8;UBERON:0000305!3.38e-12!7;UBERON:0004871!1.09e-10!8;UBERON:0000478!6.99e-10!24;UBERON:0003101!2.40e-08!22;UBERON:0000079!2.40e-08!22;UBERON:0003124!2.32e-07!7 | |ontology_enrichment_uberon=UBERON:0005631!1.43e-17!14;UBERON:0000158!1.43e-17!14;UBERON:0003135!2.74e-17!11;UBERON:0000473!5.87e-17!8;UBERON:0000305!3.38e-12!7;UBERON:0004871!1.09e-10!8;UBERON:0000478!6.99e-10!24;UBERON:0003101!2.40e-08!22;UBERON:0000079!2.40e-08!22;UBERON:0003124!2.32e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.71e-25;8!UBERON:0003135;2.13e-18;11!UBERON:0000922;2.35e-12;49!UBERON:0000991;9.10e-10;21!UBERON:0003101;2.47e-09;22!UBERON:0000079;2.47e-09;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.38e-25,8;UBERON:0003135,1.99e-18,11;UBERON:0000991,8.79e-10,21;UBERON:0009196,8.79e-10,21;UBERON:0009117,8.79e-10,21;UBERON:0005564,8.79e-10,21;UBERON:0004176,2.39e-09,22;UBERON:0003101,2.39e-09,22;UBERON:0000079,2.39e-09,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51302712679503,3.44577397635862,4.18298194330266,2.69518743039963,8.07426722802011,3.6497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,1.18785872333055,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0.0897576444097721,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5742266894814,8.9400633788202,14.9558521690507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.850299680406731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.703484977438482,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.3207933215676,0,3.46762021122738,7.48208734743569,4.87042967534678,5.51556586443225,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51302712679503,3.44577397635862,4.18298194330266,2.69518743039963,8.07426722802011,3.6497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,1.18785872333055,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0.0897576444097721,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5742266894814,8.9400633788202,14.9558521690507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.850299680406731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.703484977438482,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.3207933215676,0,3.46762021122738,7.48208734743569,4.87042967534678,5.51556586443225,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:62675452..62675463,+ | |short_description=p@chr1:62675452..62675463,+ | ||
}} | }} |
Latest revision as of 09:35, 28 July 2015
Short description: | p@chr1:62675452..62675463, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:62675452..62675463, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.07e-61 | 5 |
germ line cell | 9.75e-29 | 7 |
germ cell | 9.75e-29 | 7 |
neuron | 8.04e-20 | 6 |
neuroblast | 8.04e-20 | 6 |
electrically signaling cell | 8.04e-20 | 6 |
neuronal stem cell | 5.00e-15 | 8 |
melanocyte | 8.74e-12 | 10 |
melanoblast | 8.74e-12 | 10 |
pigment cell | 1.42e-08 | 14 |
neurectodermal cell | 4.20e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 3.38e-25 | 8 |
male reproductive organ | 1.99e-18 | 11 |
gonad | 8.79e-10 | 21 |
indifferent external genitalia | 8.79e-10 | 21 |
indifferent gonad | 8.79e-10 | 21 |
gonad primordium | 8.79e-10 | 21 |
external genitalia | 2.39e-09 | 22 |
male organism | 2.39e-09 | 22 |
male reproductive system | 2.39e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.53e-14 | 22 |
germ cell cancer | 3.53e-14 | 22 |