FFCP PHASE1:Hg19::chr21:45788947..45788956,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7226 | |EntrezGene=7226 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12339 | |HGNC=12339 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-47bp_to_ENST00000498430,uc002zex.1_5end | |association_with_transcript=-47bp_to_ENST00000498430,uc002zex.1_5end | ||
|cluster_id=chr21:45788947..45788956,+ | |||
|coexpression_cluster_id=C4082 | |coexpression_cluster_id=C4082 | ||
|description=CAGE_peak_19_at_TRPM2_5end | |description=CAGE_peak_19_at_TRPM2_5end | ||
|id=chr21:45788947..45788956,+ | |id=chr21:45788947..45788956,+ | ||
|ontology_enrichment_celltype=CL:0002553!1.88e-19!1 | |ontology_enrichment_celltype=CL:0002553!1.88e-19!1 | ||
|ontology_enrichment_celltype_v019=CL:0000039;9.43e-11;7!CL:0000586;9.43e-11;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,8.99e-11,7;CL:0000586,8.99e-11,7 | |||
|ontology_enrichment_development_v019=UBERON:0010122;3.61e-34;2!UBERON:0009117;6.34e-08;10!UBERON:0005564;6.34e-08;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000369!1.07e-72!4;UBERON:0002435!1.07e-72!4;UBERON:0000204!1.07e-72!4;UBERON:0010082!1.07e-72!4;UBERON:0009663!1.78e-64!7;UBERON:0005383!3.47e-55!3;UBERON:0005382!3.47e-55!3;UBERON:0002308!3.06e-50!9;UBERON:0002420!3.06e-50!9;UBERON:0000125!3.06e-50!9;UBERON:0007245!3.06e-50!9;UBERON:0010009!3.06e-50!9;UBERON:0010011!3.06e-50!9;UBERON:0000454!3.06e-50!9;UBERON:0001873!1.89e-37!2;UBERON:0010122!1.89e-37!2;UBERON:0002780!6.13e-27!41;UBERON:0001890!6.13e-27!41;UBERON:0006240!6.13e-27!41;UBERON:0001869!2.13e-26!32;UBERON:0003080!2.64e-26!42;UBERON:0002791!1.29e-25!33;UBERON:0002020!7.01e-25!34;UBERON:0003528!7.01e-25!34;UBERON:0001893!7.01e-25!34;UBERON:0001049!1.59e-24!57;UBERON:0005068!1.59e-24!57;UBERON:0006241!1.59e-24!57;UBERON:0007135!1.59e-24!57;UBERON:0002616!1.08e-23!59;UBERON:0000955!5.94e-20!69;UBERON:0006238!5.94e-20!69;UBERON:0001874!1.30e-19!1;UBERON:0001882!2.25e-19!1;UBERON:0005403!2.25e-19!1;UBERON:0002022!5.62e-19!1;UBERON:0003056!3.87e-18!61;UBERON:0001017!8.66e-17!82;UBERON:0003075!3.42e-16!86;UBERON:0007284!3.42e-16!86;UBERON:0005743!5.30e-16!86;UBERON:0002346!1.86e-15!90;UBERON:0000349!2.70e-15!5;UBERON:0000073!1.82e-14!94;UBERON:0001016!1.82e-14!94;UBERON:0007023!4.11e-12!115;UBERON:0000033!4.28e-11!123;UBERON:0000153!1.47e-10!129;UBERON:0007811!1.47e-10!129;UBERON:0001897!2.49e-10!2;UBERON:0001875!2.72e-10!2;UBERON:0006514!2.72e-10!2;UBERON:0001954!3.27e-10!2;UBERON:0003022!3.27e-10!2;UBERON:0002421!3.27e-10!2;UBERON:0002600!3.27e-10!2;UBERON:0000025!1.41e-08!194;UBERON:0004121!7.00e-08!169;UBERON:0000924!1.10e-07!173;UBERON:0006601!1.10e-07!173;UBERON:0004111!9.42e-07!241 | |ontology_enrichment_uberon=UBERON:0000369!1.07e-72!4;UBERON:0002435!1.07e-72!4;UBERON:0000204!1.07e-72!4;UBERON:0010082!1.07e-72!4;UBERON:0009663!1.78e-64!7;UBERON:0005383!3.47e-55!3;UBERON:0005382!3.47e-55!3;UBERON:0002308!3.06e-50!9;UBERON:0002420!3.06e-50!9;UBERON:0000125!3.06e-50!9;UBERON:0007245!3.06e-50!9;UBERON:0010009!3.06e-50!9;UBERON:0010011!3.06e-50!9;UBERON:0000454!3.06e-50!9;UBERON:0001873!1.89e-37!2;UBERON:0010122!1.89e-37!2;UBERON:0002780!6.13e-27!41;UBERON:0001890!6.13e-27!41;UBERON:0006240!6.13e-27!41;UBERON:0001869!2.13e-26!32;UBERON:0003080!2.64e-26!42;UBERON:0002791!1.29e-25!33;UBERON:0002020!7.01e-25!34;UBERON:0003528!7.01e-25!34;UBERON:0001893!7.01e-25!34;UBERON:0001049!1.59e-24!57;UBERON:0005068!1.59e-24!57;UBERON:0006241!1.59e-24!57;UBERON:0007135!1.59e-24!57;UBERON:0002616!1.08e-23!59;UBERON:0000955!5.94e-20!69;UBERON:0006238!5.94e-20!69;UBERON:0001874!1.30e-19!1;UBERON:0001882!2.25e-19!1;UBERON:0005403!2.25e-19!1;UBERON:0002022!5.62e-19!1;UBERON:0003056!3.87e-18!61;UBERON:0001017!8.66e-17!82;UBERON:0003075!3.42e-16!86;UBERON:0007284!3.42e-16!86;UBERON:0005743!5.30e-16!86;UBERON:0002346!1.86e-15!90;UBERON:0000349!2.70e-15!5;UBERON:0000073!1.82e-14!94;UBERON:0001016!1.82e-14!94;UBERON:0007023!4.11e-12!115;UBERON:0000033!4.28e-11!123;UBERON:0000153!1.47e-10!129;UBERON:0007811!1.47e-10!129;UBERON:0001897!2.49e-10!2;UBERON:0001875!2.72e-10!2;UBERON:0006514!2.72e-10!2;UBERON:0001954!3.27e-10!2;UBERON:0003022!3.27e-10!2;UBERON:0002421!3.27e-10!2;UBERON:0002600!3.27e-10!2;UBERON:0000025!1.41e-08!194;UBERON:0004121!7.00e-08!169;UBERON:0000924!1.10e-07!173;UBERON:0006601!1.10e-07!173;UBERON:0004111!9.42e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0005383;7.79e-88;3!UBERON:0005382;7.79e-88;3!UBERON:0000369;2.83e-66;4!UBERON:0002435;2.83e-66;4!UBERON:0000204;2.83e-66;4!UBERON:0001874;3.34e-66;1!UBERON:0009663;1.64e-38;7!UBERON:0001873;3.61e-34;2!UBERON:0002420;2.87e-30;9!UBERON:0000125;2.87e-30;9!UBERON:0007245;2.87e-30;9!UBERON:0002308;2.87e-30;9!UBERON:0010009;2.87e-30;9!UBERON:0010011;2.87e-30;9!UBERON:0000454;2.87e-30;9!UBERON:0000473;1.41e-09;8!UBERON:0002791;2.74e-09;32!UBERON:0001869;5.50e-08;32!UBERON:0003528;5.52e-08;34!UBERON:0002020;5.52e-08;34!UBERON:0001893;5.52e-08;34!UBERON:0003135;2.55e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,9.74e-88,3;UBERON:0005382,9.74e-88,3;UBERON:0000369,3.35e-66,4;UBERON:0002435,3.35e-66,4;UBERON:0000204,3.35e-66,4;UBERON:0010082,3.35e-66,4;UBERON:0001874,4.66e-66,1;UBERON:0009663,1.80e-38,7;UBERON:0001873,3.61e-34,2;UBERON:0010122,3.61e-34,2;UBERON:0002420,3.09e-30,9;UBERON:0000125,3.09e-30,9;UBERON:0007245,3.09e-30,9;UBERON:0002308,3.09e-30,9;UBERON:0010009,3.09e-30,9;UBERON:0010011,3.09e-30,9;UBERON:0000454,3.09e-30,9;UBERON:0000473,1.35e-09,8;UBERON:0002791,3.95e-09,32;UBERON:0001869,3.95e-09,32;UBERON:0003528,1.14e-08,34;UBERON:0002020,1.14e-08,34;UBERON:0001893,1.14e-08,34;UBERON:0002780,2.10e-07,41;UBERON:0001890,2.10e-07,41;UBERON:0003080,2.10e-07,41;UBERON:0006240,2.10e-07,41;UBERON:0003135,2.47e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,3.49729672013683,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.706521476061055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04250266890802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6649520865105,0,0,0,0,0.517164979309476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,3.49729672013683,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.706521476061055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04250266890802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6649520865105,0,0,0,0,0.517164979309476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p19@TRPM2 | |short_description=p19@TRPM2 | ||
}} | }} |
Latest revision as of 18:53, 18 September 2015
Short description: | p19@TRPM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_TRPM2_5end |
Coexpression cluster: | C4082_caudate_testicular_putamen_nonsmall_globus_nucleus_diencephalon |
Association with transcript: | -47bp_to_ENST00000498430, uc002zex.1_5end |
EntrezGene: | TRPM2 |
HGNC: | 12339 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 8.99e-11 | 7 |
germ cell | 8.99e-11 | 7 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 9.74e-88 | 3 |
dorsal striatum | 9.74e-88 | 3 |
corpus striatum | 3.35e-66 | 4 |
striatum | 3.35e-66 | 4 |
ventral part of telencephalon | 3.35e-66 | 4 |
future corpus striatum | 3.35e-66 | 4 |
putamen | 4.66e-66 | 1 |
telencephalic nucleus | 1.80e-38 | 7 |
caudate nucleus | 3.61e-34 | 2 |
future caudate nucleus | 3.61e-34 | 2 |
basal ganglion | 3.09e-30 | 9 |
neural nucleus | 3.09e-30 | 9 |
nuclear complex of neuraxis | 3.09e-30 | 9 |
nucleus of brain | 3.09e-30 | 9 |
aggregate regional part of brain | 3.09e-30 | 9 |
collection of basal ganglia | 3.09e-30 | 9 |
cerebral subcortex | 3.09e-30 | 9 |
testis | 1.35e-09 | 8 |
regional part of telencephalon | 3.95e-09 | 32 |
cerebral hemisphere | 3.95e-09 | 32 |
brain grey matter | 1.14e-08 | 34 |
gray matter | 1.14e-08 | 34 |
telencephalon | 1.14e-08 | 34 |
regional part of forebrain | 2.10e-07 | 41 |
forebrain | 2.10e-07 | 41 |
anterior neural tube | 2.10e-07 | 41 |
future forebrain | 2.10e-07 | 41 |
male reproductive organ | 2.47e-07 | 11 |