FFCP PHASE1:Hg19::chr19:23257988..23258060,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:23257988..23258060,+
|short_description=p@chr19:23257988..23258060,+
|description=CAGE_peak_at_chr19:23257988..23258060,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:23257988..23258060,+ | |||
|coexpression_cluster_id=C3772 | |||
|description=CAGE_peak_at_chr19:23257988..23258060,+ | |||
|id=chr19:23257988..23258060,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.48e-12!25;CL:0000133!1.45e-11!59;CL:0000333!2.90e-10!41;CL:0000221!2.90e-09!71;CL:0000055!1.22e-07!180;CL:0000095!1.37e-07!17;CL:0000123!1.37e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.01e-13;25!CL:0000095;3.62e-08;17!CL:0002321;3.15e-07;15!CL:0000243;3.58e-07;15!CL:0000125;3.58e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.31e-13,25;CL:0000133,1.75e-12,59;CL:0000333,4.45e-10,41;CL:0000221,2.85e-09,72;CL:0000095,3.71e-08,17;CL:0000123,3.71e-08,17;CL:0000243,3.84e-07,15;CL:0000125,3.84e-07,15;CL:0000030,3.84e-07,15;CL:0000339,3.84e-07,15;CL:0000047,7.21e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000339;3.58e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;4.10e-07;22!DOID:2994;4.10e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.83e-07,22;DOID:2994,4.83e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000924!6.29e-15!173;UBERON:0006601!6.29e-15!173;UBERON:0000073!1.14e-14!94;UBERON:0001016!1.14e-14!94;UBERON:0004121!3.74e-14!169;UBERON:0005743!1.29e-12!86;UBERON:0001017!2.02e-11!82;UBERON:0000153!2.31e-10!129;UBERON:0007811!2.31e-10!129;UBERON:0000033!3.62e-10!123;UBERON:0002346!1.10e-09!90;UBERON:0003075!5.77e-09!86;UBERON:0007284!5.77e-09!86;UBERON:0000119!3.89e-08!312;UBERON:0000955!8.24e-08!69;UBERON:0006238!8.24e-08!69;UBERON:0000475!8.28e-08!365;UBERON:0000483!2.14e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;4.14e-07;24!UBERON:0011143;4.14e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.92e-12,89;UBERON:0004121,3.67e-11,171;UBERON:0000924,3.67e-11,171;UBERON:0006601,3.67e-11,171;UBERON:0001017,6.70e-10,81;UBERON:0002346,6.81e-08,86;UBERON:0010314,2.23e-07,132;UBERON:0003075,2.31e-07,82;UBERON:0007284,2.31e-07,82 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0.893922188854576,0,0,0,0,5.6518805395347,6.28021051175185,9.17453762946723,3.9565046734268,1.98026164736075,1.32558950291166,0,0.602694528023977,1.46062018077475,0.487932798790507,16.8675849565199,8.77202972350288,5.64218498660558,26.0474748289262,27.238010589504,34.2731406093812,0,0.164201178899891,0,0,0,0.309632246632152,0,0.6024118375565,0,0,3.41206157969812,7.92721186204087,0,0,0,0.223915474239924,0.971680998056939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,7.93027971474155,0.560508562981536,8.42829071280246,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0.128091319725675,0.130059347559878,0.328875809207352,0,0.289803085735052,0,0,0,0.339928028092699,0,0,0.253019692019503,0,0,0.950452044448374,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,2.68511379871414,0.361439152384566,0.50133791063589,0.579386075843295,2.3858578411533,0.973269740605272,24.0118435596732,11.7516580655159,11.9455308542651,2.5540919722054,1.09288586487763,0,0.649094787309367,0.348259474598534,0.132957960518865,0,0,0,1.19257444420023,0,2.77712401286075,0,0,0.550236083880135,0.626984899610432,2.32575083252396,3.5576626268671,3.01248551488203,2.41697590265488,0,2.92874469057803,1.83831540172934,0,3.83988831621543,2.69435247151404,4.39184773884957,6.13266549863533,0,0.366403487860815,0,0,2.61656431285521,0.496971951695318,1.51956613997496,0.794455084879313,3.44203944898576,1.77334191099179,0.560677600142307,4.2699598291882,1.2333377420858,5.29058760179603,2.82892411346345,4.57693328717684,2.72443369760877,1.15235184896,4.21778577300834,0.312160076830321,1.1409436430889,0.149448680551801,7.39837341455719,9.55050371771976,11.0956137294776,2.85815839756851,16.4597985197769,1.13658359293342,2.37600571456411,1.48360157567134,0,0,14.9819141419119,18.0170668615628,6.09541054065202,2.63386572528503,0.612975591598039,0.751190294532984,4.3104229600808,5.202299434977,0.640672166455702,0.211931901159562,0.900273288253207,0,0.257640540045629,0.18611685633159,7.25738228637445,1.46155507741798,3.28163906517349,0.828449087780694,0.80823028409406,4.61512470271599,2.51880245569101,3.05209066158878,0.386521706326594,0.272746120590835,0.860413786167011,32.2010584182132,43.2047044728042,28.699903888771,19.6956004529204,27.5029727454435,47.4470566798579,0,0.643240938192885,2.76269842704961,2.3218396401599,0.721879481669586,0,0,0.241011029883482,0,0,0,0.269662616320329,0,0.38474715694639,4.42893272774789,7.01208869017229,3.7041661019826,1.47008711385542,0,0,0.590789906681404,0,0,9.77936518701596,0.548751427043128,0,0.201057944823262,5.27754137403619,0.977424915930974,7.27954349695705,1.44331342025273,14.4913006218846,1.52631302506568,3.3204282985047,1.85194205030644,3.42457474022277,2.37061319387782,1.71697232418975,0.246217006087397,0.234004265139238,1.63494278517601,1.87467667973554,0.503946384596579,1.55952606966625,0.358234090811393,2.90633938513962,1.53353071666084,1.47798971368783,3.43388892651582,2.69526550203004,4.17947864909188,1.38866676769018,11.7471104440513,1.52795370223311,4.68869788840188,0,9.46012932870576,3.60411669412701,6.00235508524214,15.6983518083505,10.4630416519987,18.5545863127004,0.904902010304444,3.57656445851882,1.690605505112,1.06375246633948,0,7.9734286021264,14.1849132023278,6.12771011737029,2.57360388584666,0.542621605391443,9.87888404136923,2.93162565864362,1.06617584622764,0,0.301439377059586,0,1.89948683245908,0,0,0,1.19812427745791,0,2.85273810081437,1.01346914667305,1.02738161275192,4.47652408099739,0.448340575974109,0,0,0.128343036279748,17.2784344471275,15.6167824629146,11.5993321916654,11.2235897774014,8.29320377149112,0,0,0,1.10422342547226,1.50051156317903,2.17012018959788,1.03985430765404,0,0,0,0.601892199455438,0,0,1.32845119707087,3.50301420229236,1.99832313276591,3.32861967686659,2.05886054286514,0.206768026122887,0.215714200818617,0,3.03127571446259,1.66435439510497,8.46692821323105,0,1.99500565274481,0.280660094433074,0.128139149255701,1.02341449813341,0.64341568457443,0,1.23367755042124,0.710246901252508,1.23190734020714,0,0.697262270759755,0,0.40101294060657,0.368323955743585,3.21480454860899,2.73136752010076,0.655622074797121,5.86559496779635,9.62691713805185,10.1965469992991,7.30696123266303,7.70526890917993,0,2.72149928442425,5.82972973475776,4.62681758070868,5.96082162596476,6.52196706011309,7.90116446439619,13.2972161428596,12.9847357738863,1.09629938322967,1.5686127061494,18.9773092586128,10.1684540166909,3.57916234130733,1.44257416306811,0.0915694648183434,0.082509499920588,0,0.650060246036521,0,1.25671933779759,6.47004191881506,6.44715433849744,7.30533834168012,6.76747542670124,6.38073453222605,12.0169544656702,4.80772992492382,0.165284915360978,0,3.06270509987002,0,0.464845549297286,0.94443704049192,0,0,0,1.73986598415015,0.37064843820784,0.286249773483982,15.630651513106,5.69482964493707,2.66882271493355,5.11795582622668,0.855877976067841,1.909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| ||
|short_description=p@chr19:23257988..23258060,+ | |||
}} | }} |
Latest revision as of 05:49, 26 July 2015
Short description: | p@chr19:23257988..23258060, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:23257988..23258060, + |
Coexpression cluster: | C3772_non_iPS_H9_HES3GFP_retinoblastoma_neuroectodermal_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.31e-13 | 25 |
neurectodermal cell | 1.75e-12 | 59 |
migratory neural crest cell | 4.45e-10 | 41 |
ectodermal cell | 2.85e-09 | 72 |
neuron associated cell | 3.71e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 3.71e-08 | 17 |
glial cell (sensu Vertebrata) | 3.84e-07 | 15 |
glial cell | 3.84e-07 | 15 |
glioblast | 3.84e-07 | 15 |
glioblast (sensu Vertebrata) | 3.84e-07 | 15 |
neuronal stem cell | 7.21e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.92e-12 | 89 |
ectoderm-derived structure | 3.67e-11 | 171 |
ectoderm | 3.67e-11 | 171 |
presumptive ectoderm | 3.67e-11 | 171 |
central nervous system | 6.70e-10 | 81 |
neurectoderm | 6.81e-08 | 86 |
structure with developmental contribution from neural crest | 2.23e-07 | 132 |
neural plate | 2.31e-07 | 82 |
presumptive neural plate | 2.31e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.83e-07 | 22 |
germ cell cancer | 4.83e-07 | 22 |