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{{UBERON
{{UBERON
|id=UBERON:0003081
|alt_id=UBERON:XAO_0000311-ZFA_0000121
|name=lateral plate mesoderm
|namespace=
|def="Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
|xref=AAO:0010574;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Lateral_Mesoderm;;SCTID:361477005;;TAO:0000121;;TAO:0001065;;VHOG:0000118;;XAO:0000311;;ZFA:0000121
|is_a=UBERON:0005423
|synonym="lateral mesoderm" EXACT [GO:0048368];;"lateral plate" RELATED []
|comment=
|comment=
|alt_id=UBERON:XAO_0000311-ZFA_0000121
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003081
|is_a=UBERON:0004120 ;;UBERON:0005291 ;;UBERON:0007524
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0000926
|name=lateral plate mesoderm
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0000926
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of mesoderm traditionally thought to give rise to limb bones and parts of the girdles.[AAO]" xsd:string
|subset=uberon_slim
|synonym="lateral mesoderm" EXACT [GO:0048368];;"lateral plate" RELATED [];;"mesoderma laminae lateralis" RELATED LATIN [Wikipedia:Lateral_plate_mesoderm]
|union_of=
|xref=AAO:0010574;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Lateral_Mesoderm;;SCTID:361477005;;TAO:0000121;;VHOG:0000118;;XAO:0000311;;ZFA:0000121
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:lateral plate mesoderm
Namespace:FANTOM
Definition:"Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
Xrefs:
links:

AAO:0010574
[ Gray19_with_color.png Gray19_with_color.png]
[ 200px-Gray19_with_color.png 200px-Gray19_with_color.png]
ncithesaurus:Lateral_Mesoderm
SCTID:361477005
TAO:0000121
VHOG:0000118
XAO:0000311

ZFA:0000121
Synonyms: "lateral mesoderm" EXACT [GO:0048368]
"lateral plate" RELATED []
"mesoderma laminae lateralis" RELATED LATIN [Wikipedia:Lateral_plate_mesoderm]
Alt_id: UBERON:XAO_0000311-ZFA_0000121
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0000926(mesoderm)



Children

develops from:UBERON:0003061 (blood island),UBERON:0003084 (heart primordium),UBERON:0003887 (intraembryonic coelom),UBERON:0004381 (skeleton of limb),UBERON:0005728 (extraembryonic mesoderm),UBERON:0011582 (paired limb/fin skeleton)
part of:UBERON:0004140 (primary heart field),UBERON:0004871 (somatic layer of lateral plate mesoderm),UBERON:0004872 (splanchnic layer of lateral plate mesoderm),UBERON:0004874 (somatopleure),UBERON:0005732 (limb/fin field),UBERON:0006258 (lateral plate mesenchyme),UBERON:0009881 (anterior lateral plate mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003081 (lateral plate mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.25e-50FFCP PHASE2:Hg19::chrX:153637522..153637533,-#_dbd8038870c12e5693b6e6e6f56f8dc7p4@DNASE1L1
2.25e-50FFCP PHASE1:Hg19::chrX:153637522..153637533,-#_dbd8038870c12e5693b6e6e6f56f8dc7p4@DNASE1L1
7.07e-50FFCP PHASE2:Hg19::chrX:153637534..153637567,-#_f7f443f46c32ec415b97e5a2aa785767p1@DNASE1L1
7.07e-50FFCP PHASE1:Hg19::chrX:153637534..153637567,-#_f7f443f46c32ec415b97e5a2aa785767p1@DNASE1L1
6.88e-49FFCP PHASE2:Hg19::chr10:31288370..31288393,-#_a2eebd831a9fbfb6928f5a189d01616ep3@ZNF438
6.88e-49FFCP PHASE1:Hg19::chr10:31288370..31288393,-#_a2eebd831a9fbfb6928f5a189d01616ep3@ZNF438
1.53e-48FFCP PHASE2:Hg19::chr3:50273625..50273655,+#_2f0842eaeec319494043b69337ab6c92p1@GNAI2
1.53e-48FFCP PHASE1:Hg19::chr3:50273625..50273655,+#_2f0842eaeec319494043b69337ab6c92p1@GNAI2
2.09e-47FFCP PHASE1:Hg19::chr15:75871275..75871295,-#_a086ead6e1448e9369f923fc0fc5c440p4@PTPN9
2.09e-47FFCP PHASE2:Hg19::chr15:75871275..75871295,-#_a086ead6e1448e9369f923fc0fc5c440p4@PTPN9
5.83e-47FFCP PHASE1:Hg19::chr3:69402726..69402747,-#_09afad11ad645117b799b9cc1aa6fccfp6@FRMD4B
5.83e-47FFCP PHASE2:Hg19::chr3:69402726..69402747,-#_09afad11ad645117b799b9cc1aa6fccfp6@FRMD4B
5.57e-46FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_64cd5f76f2918ce3e24567425dc6c434p@chr16:50313426..50313459, +
5.57e-46FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_64cd5f76f2918ce3e24567425dc6c434p@chr16:50313426..50313459, +
1.38e-45FFCP PHASE2:Hg19::chr20:23067005..23067021,-#_f803be2db351d5e95855506d01d4b376p2@CD93
1.38e-45FFCP PHASE1:Hg19::chr20:23067005..23067021,-#_f803be2db351d5e95855506d01d4b376p2@CD93
1.41e-45FFCP PHASE1:Hg19::chr10:31288329..31288353,-#_65e7f3eb0a9f2473a9cad4b8f4f491ecp7@ZNF438
1.41e-45FFCP PHASE2:Hg19::chr10:31288329..31288353,-#_65e7f3eb0a9f2473a9cad4b8f4f491ecp7@ZNF438
3.68e-45FFCP PHASE1:Hg19::chr8:38663025..38663040,+#_c304fdbdfa4a3a773acb138b664adf91p15@TACC1
3.68e-45FFCP PHASE2:Hg19::chr8:38663025..38663040,+#_c304fdbdfa4a3a773acb138b664adf91p15@TACC1
8.24e-45FFCP PHASE2:Hg19::chr4:103747936..103747993,-#_62398bb3a8c0659d831c663ddb204b6dp6@UBE2D3
8.24e-45FFCP PHASE1:Hg19::chr4:103747936..103747993,-#_62398bb3a8c0659d831c663ddb204b6dp6@UBE2D3
8.31e-45FFCP PHASE1:Hg19::chr19:54784461..54784484,-#_8c9dda374901ab4fcf003cab0861fff2p2@LILRB2
8.31e-45FFCP PHASE2:Hg19::chr19:54784461..54784484,-#_8c9dda374901ab4fcf003cab0861fff2p2@LILRB2
8.95e-45FFCP PHASE2:Hg19::chr6:134694635..134694653,-#_2cb9d807c167755f151c18d0ae665636p@chr6:134694635..134694653, -
8.95e-45FFCP PHASE1:Hg19::chr6:134694635..134694653,-#_2cb9d807c167755f151c18d0ae665636p@chr6:134694635..134694653, -
1.04e-44FFCP PHASE2:Hg19::chr6:30653819..30653835,-#_262115374de766c53ad720a33ba57245p10@PPP1R18
1.04e-44FFCP PHASE1:Hg19::chr6:30653819..30653835,-#_262115374de766c53ad720a33ba57245p10@PPP1R18
2.36e-44FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_94683397115456a49800a8396cf9f2a4p8@CTSS
2.36e-44FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_94683397115456a49800a8396cf9f2a4p8@CTSS
3.24e-44FFCP PHASE1:Hg19::chr3:69402828..69402852,-#_60643d362291f678545994522d594b70p8@FRMD4B
3.24e-44FFCP PHASE2:Hg19::chr3:69402828..69402852,-#_60643d362291f678545994522d594b70p8@FRMD4B
6.06e-44FFCP PHASE2:Hg19::chr17:7077765..7077789,-#_5c33f2306441160728cc2269393f0c13p@chr17:7077765..7077789, -
6.06e-44FFCP PHASE1:Hg19::chr17:7077765..7077789,-#_5c33f2306441160728cc2269393f0c13p@chr17:7077765..7077789, -
9.49e-44FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_134550ef7b9b5d646f3096168a2e43efp@chr2:119726719..119726744, +
9.49e-44FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_134550ef7b9b5d646f3096168a2e43efp@chr2:119726719..119726744, +
1.94e-43FFCP PHASE2:Hg19::chr1:17944856..17944906,+#_bf88457975c199be86b028826c970deep3@ARHGEF10L
1.94e-43FFCP PHASE1:Hg19::chr1:17944856..17944906,+#_bf88457975c199be86b028826c970deep3@ARHGEF10L
3.01e-43FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_1de9fdf4e86a7de1cbc264aabfc7e58bp1@CYP1B1-AS1
3.01e-43FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_1de9fdf4e86a7de1cbc264aabfc7e58bp1@CYP1B1-AS1
5.01e-43FFCP PHASE2:Hg19::chr10:20105868..20105875,+#_53690ad4147bb3e0c58a9dabdd15104cp8@PLXDC2
5.01e-43FFCP PHASE1:Hg19::chr10:20105868..20105875,+#_53690ad4147bb3e0c58a9dabdd15104cp8@PLXDC2
5.09e-43FFCP PHASE1:Hg19::chr1:1711415..1711426,-#_a6098b3e64c84b84eef974ac5ab3c9acp4@NADK
5.09e-43FFCP PHASE2:Hg19::chr1:1711415..1711426,-#_a6098b3e64c84b84eef974ac5ab3c9acp4@NADK
5.41e-43FFCP PHASE1:Hg19::chr19:47823947..47823977,+#_1a702e3365cc427e120bc55ce4ecb35fp@chr19:47823947..47823977, +
5.41e-43FFCP PHASE2:Hg19::chr19:47823947..47823977,+#_1a702e3365cc427e120bc55ce4ecb35fp@chr19:47823947..47823977, +
8.82e-43FFCP PHASE1:Hg19::chr7:99971180..99971191,+#_856886eea70b7d295f4525c4cbee7a63p3@PILRA
8.82e-43FFCP PHASE2:Hg19::chr7:99971180..99971191,+#_856886eea70b7d295f4525c4cbee7a63p3@PILRA
1.8e-42FFCP PHASE1:Hg19::chr10:97457378..97457404,+#_ae46b3c81b576a02f90fa065e6053d89p@chr10:97457378..97457404, +
1.8e-42FFCP PHASE2:Hg19::chr10:97457378..97457404,+#_ae46b3c81b576a02f90fa065e6053d89p@chr10:97457378..97457404, +
2.49e-42FFCP PHASE1:Hg19::chr21:37802374..37802391,-#_6520ace73734c7b64d3f80aeb63b940cp@chr21:37802374..37802391, -
2.49e-42FFCP PHASE2:Hg19::chr21:37802374..37802391,-#_6520ace73734c7b64d3f80aeb63b940cp@chr21:37802374..37802391, -
3.17e-42FFCP PHASE1:Hg19::chr9:120466650..120466659,+#_c0d8acd46bad509e7fba9274ae621f62p6@TLR4
3.17e-42FFCP PHASE2:Hg19::chr9:120466650..120466659,+#_c0d8acd46bad509e7fba9274ae621f62p6@TLR4
5.49e-42FFCP PHASE1:Hg19::chr2:71295766..71295788,+#_15431ba439bc11a4b22ca6979a36ac0ap1@NAGK
5.49e-42FFCP PHASE2:Hg19::chr2:71295766..71295788,+#_15431ba439bc11a4b22ca6979a36ac0ap1@NAGK
6.5e-42FFCP PHASE1:Hg19::chr19:41859814..41859837,-#_04f16e4a62bf9efd414e6fc1b84acf39p1@TGFB1
6.5e-42FFCP PHASE2:Hg19::chr19:41859814..41859837,-#_04f16e4a62bf9efd414e6fc1b84acf39p1@TGFB1
6.65e-42FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_e5e709a1a82cbaf33dec5309089cdf90p@chr19:18283959..18283993, +
6.65e-42FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_e5e709a1a82cbaf33dec5309089cdf90p@chr19:18283959..18283993, +
8.29e-42FFCP PHASE1:Hg19::chr5:156534291..156534357,-#_641e3b47bfdf3b888b0ed7637c0f6162p4@HAVCR2
8.29e-42FFCP PHASE2:Hg19::chr5:156534291..156534357,-#_641e3b47bfdf3b888b0ed7637c0f6162p4@HAVCR2
8.45e-42FFCP PHASE2:Hg19::chr7:139586209..139586213,+#_705d59a69af5404cf73c62cc62f171e0p@chr7:139586209..139586213, +
8.45e-42FFCP PHASE1:Hg19::chr7:139586209..139586213,+#_705d59a69af5404cf73c62cc62f171e0p@chr7:139586209..139586213, +
9.34e-42FFCP PHASE2:Hg19::chr8:90770100..90770114,+#_e83b4d207d948425dac13b33732465e8p2@RIPK2
9.34e-42FFCP PHASE1:Hg19::chr8:90770100..90770114,+#_e83b4d207d948425dac13b33732465e8p2@RIPK2
1.14e-41FFCP PHASE1:Hg19::chr1:150705526..150705571,-#_458423e6b1f221eeac202c9e62642756p@chr1:150705526..150705571, -
1.14e-41FFCP PHASE2:Hg19::chr1:150705526..150705571,-#_458423e6b1f221eeac202c9e62642756p@chr1:150705526..150705571, -
1.14e-41FFCP PHASE1:Hg19::chr10:70847852..70847873,+#_458423e6b1f221eeac202c9e62642756p1@SRGN
1.14e-41FFCP PHASE2:Hg19::chr10:70847852..70847873,+#_458423e6b1f221eeac202c9e62642756p1@SRGN
1.16e-41FFCP PHASE2:Hg19::chr22:22307182..22307197,-#_c038e04590d965e0ece0480c7d543c30p2@PPM1F
1.16e-41FFCP PHASE1:Hg19::chr22:22307182..22307197,-#_c038e04590d965e0ece0480c7d543c30p2@PPM1F
1.4e-41FFCP PHASE2:Hg19::chr2:201994123..201994147,+#_4c6337844b902b616ca5160286e3c0a9p9@CFLAR
1.4e-41FFCP PHASE1:Hg19::chr2:201994123..201994147,+#_4c6337844b902b616ca5160286e3c0a9p9@CFLAR
1.5e-41FFCP PHASE2:Hg19::chr9:137808181..137808200,+#_60d4f9cecccecb2b910e726ec3dc71dcp@chr9:137808181..137808200, +
1.5e-41FFCP PHASE1:Hg19::chr9:137808181..137808200,+#_60d4f9cecccecb2b910e726ec3dc71dcp@chr9:137808181..137808200, +
1.59e-41FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_89f4858c689e7430e61cb5dce66badc7p7@EMILIN2
1.59e-41FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_89f4858c689e7430e61cb5dce66badc7p7@EMILIN2
1.77e-41FFCP PHASE2:Hg19::chr5:79442172..79442212,-#_1851a3fbe2656b5ef5e3974ff09c95fap@chr5:79442172..79442212, -
1.77e-41FFCP PHASE1:Hg19::chr5:79442172..79442212,-#_1851a3fbe2656b5ef5e3974ff09c95fap@chr5:79442172..79442212, -
2.21e-41FFCP PHASE1:Hg19::chr14:92927376..92927396,+#_cd76e3219ae774de331bb013e30f057dp@chr14:92927376..92927396, +
2.21e-41FFCP PHASE2:Hg19::chr14:92927376..92927396,+#_cd76e3219ae774de331bb013e30f057dp@chr14:92927376..92927396, +
2.4e-41FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_69c21e96ae40e107cd6e2dd53359118ep2@CD300C
2.4e-41FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_69c21e96ae40e107cd6e2dd53359118ep2@CD300C
2.73e-41FFCP PHASE1:Hg19::chr19:18288780..18288808,+#_859db18a981220b55efe7ef4d8dec885p4@IFI30
2.73e-41FFCP PHASE2:Hg19::chr19:18288780..18288808,+#_859db18a981220b55efe7ef4d8dec885p4@IFI30
2.91e-41FFCP PHASE1:Hg19::chr7:44084744..44084800,-#_9cc50f0e4c32f8adc2b8b5b7ad3beeb2p@chr7:44084744..44084800, -
2.91e-41FFCP PHASE2:Hg19::chr7:44084744..44084800,-#_9cc50f0e4c32f8adc2b8b5b7ad3beeb2p@chr7:44084744..44084800, -
4.26e-41FFCP PHASE1:Hg19::chrX:80458085..80458112,+#_94d5734999df06434c58d29b228b0987p7@SH3BGRL
4.26e-41FFCP PHASE2:Hg19::chrX:80458085..80458112,+#_94d5734999df06434c58d29b228b0987p7@SH3BGRL
5.57e-41FFCP PHASE1:Hg19::chr14:23288956..23289020,-#_e22bf949b6455a1afb680bae0195c0c8p3@SLC7A7
5.57e-41FFCP PHASE2:Hg19::chr14:23288956..23289020,-#_e22bf949b6455a1afb680bae0195c0c8p3@SLC7A7
5.77e-41FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_dd8590f311e58f6242c19b74cb1e2130p@chr14:103587759..103587770, +
5.77e-41FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_dd8590f311e58f6242c19b74cb1e2130p@chr14:103587759..103587770, +
6.2e-41FFCP PHASE2:Hg19::chrX:152086449..152086473,+#_37b451f68f2c7d3dcdce7bd11b729466p4@ZNF185
6.2e-41FFCP PHASE1:Hg19::chrX:152086449..152086473,+#_37b451f68f2c7d3dcdce7bd11b729466p4@ZNF185
6.56e-41FFCP PHASE2:Hg19::chr3:194299051..194299068,+#_ffa402a92a307509cc4182a64f26e601p@chr3:194299051..194299068, +
6.56e-41FFCP PHASE1:Hg19::chr3:194299051..194299068,+#_ffa402a92a307509cc4182a64f26e601p@chr3:194299051..194299068, +
7.48e-41FFCP PHASE2:Hg19::chr11:47380465..47380487,-#_6b9082a2e040da7596d86a398d6d8b35p@chr11:47380465..47380487, -
7.48e-41FFCP PHASE1:Hg19::chr11:47380465..47380487,-#_6b9082a2e040da7596d86a398d6d8b35p@chr11:47380465..47380487, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of mesoderm traditionally thought to give rise to limb bones and parts of the girdles.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003081&oldid=3277513"