UBERON:0000061: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000061 | |||
|is_a=UBERON:0000465 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical structure | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=upper_level | ||
| | |synonym="biological structure" EXACT [] | ||
|union_of= | |||
|xref=AAO:0010825;;AEO:0000003;;BILA:0000003;;CARO:0000003;;EHDAA2:0003003;;FBbt:00007001;;FMA:67135;;GAID:781;;HAO:0000003;;MA:0003000;;MESH:A.13;;SCTID:362889002;;TAO:0000037;;TGMA:0001823;;XAO:0003000;;ZFA:0000037 | |||
}} | }} | ||
Latest revision as of 17:05, 12 September 2014
| Name: | anatomical structure | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003] | ||
| Xrefs: |
| ||
| Synonyms: | "biological structure" EXACT [] | ||
| Alt_id: | UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094 | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000465(material anatomical entity) |
|---|
Children
| is a: | UBERON:0000470 (cell part),UBERON:0000476 (acellular anatomical structure),UBERON:0000478 (extraembryonic structure),UBERON:0000480 (anatomical group),UBERON:0002050 (embryonic structure),UBERON:0003102 (surface structure),UBERON:0004119 (endoderm-derived structure),UBERON:0004120 (mesoderm-derived structure),UBERON:0004121 (ectoderm-derived structure),UBERON:0005090 (muscle structure),UBERON:0006554 (urinary system structure),UBERON:0007651 (anatomical junction),UBERON:0009856 (sac),UBERON:0010000 (multicellular anatomical structure),UBERON:0010314 (structure with developmental contribution from neural crest),UBERON:0010317 (germ layer / neural crest derived structure),UBERON:0011585 (cell condensation),UBERON:0014402 (sex-specific anatomical structure),UBERON:0015212 (lateral structure) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
- 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
- 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
- 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
- 10004-101A9 (chicken embryo whole body, day10 (HH37))
- 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
- 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
- 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
- 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
- 10010-101C1 (adipose tissue, adult, pool1)
... further results Mouse (Mus musculus)
- 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
- 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
- 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
- 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
- 10004-101A9 (chicken embryo whole body, day10 (HH37))
- 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
- 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
- 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
- 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
- 10010-101C1 (adipose tissue, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000061 (anatomical structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
