FF:486-18I5: Difference between revisions

Latest revision as of 19:17, 4 June 2020

Name:	testis, embryo E17
Species:	Mouse (Mus musculus)
Library ID:	CNhs11029
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	testis
dev stage	17 days embryo
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005862

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11029		CAGE		DRX009105		DRR009979

Accession ID Mm9

Library id		BAM		CTSS
CNhs11029		DRZ001404		DRZ002787

Accession ID Mm10

Library id		BAM		CTSS
CNhs11029		DRZ012754		DRZ014137

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11029

0	0
1	0
10	0
100	0
1000	0
1001	-0.0631
1002	0.466
1003	0.0355
1004	0.0528
1005	-0.0571
1006	-0.00934
1007	0.00174
1008	0
1009	0.118
101	0.0493
1010	0
1011	0.0372
1012	0
1013	-0.157
1014	0.24
1015	0.203
1016	0.234
1017	0
1018	0
1019	0
102	0
1020	0.0528
1021	0
1022	-0.0712
1023	0
1024	-0.0371
1025	0.0528
1026	0.0528
1027	0
1028	0.0528
1029	0.0433
103	0.276
1030	0
1031	0.386
1032	0.0656
1033	0
1034	0
1035	0.0528
1036	-0.0276
1037	0
1038	-0.0113
1039	-0.067
104	0
1040	-0.0343
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11029

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0118
MA0003.1	MA0003.1	0.619
MA0004.1	MA0004.1	0.198
MA0006.1	MA0006.1	0.116
MA0007.1	MA0007.1	0.621
MA0009.1	MA0009.1	0.393
MA0014.1	MA0014.1	0.776
MA0017.1	MA0017.1	0.00228
MA0018.2	MA0018.2	0.802
MA0019.1	MA0019.1	0.317
MA0024.1	MA0024.1	3.34561e-6
MA0025.1	MA0025.1	0.88
MA0027.1	MA0027.1	0.505
MA0028.1	MA0028.1	0.128
MA0029.1	MA0029.1	0.847
MA0030.1	MA0030.1	0.0155
MA0031.1	MA0031.1	0.133
MA0035.2	MA0035.2	0.948
MA0038.1	MA0038.1	0.00273
MA0039.2	MA0039.2	0.0346
MA0040.1	MA0040.1	0.365
MA0041.1	MA0041.1	0.355
MA0042.1	MA0042.1	0.382
MA0043.1	MA0043.1	0.473
MA0046.1	MA0046.1	3.83305e-18
MA0047.2	MA0047.2	0.032
MA0048.1	MA0048.1	0.0388
MA0050.1	MA0050.1	0.00889
MA0051.1	MA0051.1	0.0144
MA0052.1	MA0052.1	0.0143
MA0055.1	MA0055.1	0.00255
MA0057.1	MA0057.1	0.388
MA0058.1	MA0058.1	0.0409
MA0059.1	MA0059.1	0.118
MA0060.1	MA0060.1	3.33786e-16
MA0061.1	MA0061.1	0.158
MA0062.2	MA0062.2	0.558
MA0065.2	MA0065.2	0.0468
MA0066.1	MA0066.1	0.0586
MA0067.1	MA0067.1	0.996
MA0068.1	MA0068.1	0.0288
MA0069.1	MA0069.1	0.887
MA0070.1	MA0070.1	0.175
MA0071.1	MA0071.1	0.977
MA0072.1	MA0072.1	0.25
MA0073.1	MA0073.1	0.938
MA0074.1	MA0074.1	0.809
MA0076.1	MA0076.1	0.0616
MA0077.1	MA0077.1	0.769
MA0078.1	MA0078.1	0.0819
MA0079.2	MA0079.2	0.189
MA0080.2	MA0080.2	1.1574e-5
MA0081.1	MA0081.1	0.366
MA0083.1	MA0083.1	0.786
MA0084.1	MA0084.1	0.919
MA0087.1	MA0087.1	0.396
MA0088.1	MA0088.1	0.837
MA0090.1	MA0090.1	0.891
MA0091.1	MA0091.1	0.462
MA0092.1	MA0092.1	0.342
MA0093.1	MA0093.1	0.112
MA0099.2	MA0099.2	8.06631e-4
MA0100.1	MA0100.1	0.558
MA0101.1	MA0101.1	0.484
MA0102.2	MA0102.2	0.792
MA0103.1	MA0103.1	5.2849e-4
MA0104.2	MA0104.2	0.00634
MA0105.1	MA0105.1	0.00859
MA0106.1	MA0106.1	0.904
MA0107.1	MA0107.1	0.228
MA0108.2	MA0108.2	0.3
MA0111.1	MA0111.1	0.235
MA0112.2	MA0112.2	0.00772
MA0113.1	MA0113.1	0.439
MA0114.1	MA0114.1	0.00277
MA0115.1	MA0115.1	0.0612
MA0116.1	MA0116.1	0.315
MA0117.1	MA0117.1	0.161
MA0119.1	MA0119.1	0.689
MA0122.1	MA0122.1	0.867
MA0124.1	MA0124.1	0.253
MA0125.1	MA0125.1	0.799
MA0131.1	MA0131.1	0.511
MA0135.1	MA0135.1	0.887
MA0136.1	MA0136.1	0.00443
MA0137.2	MA0137.2	0.475
MA0138.2	MA0138.2	0.00203
MA0139.1	MA0139.1	0.82
MA0140.1	MA0140.1	0.879
MA0141.1	MA0141.1	0.0969
MA0142.1	MA0142.1	0.0136
MA0143.1	MA0143.1	0.746
MA0144.1	MA0144.1	0.263
MA0145.1	MA0145.1	0.0254
MA0146.1	MA0146.1	0.492
MA0147.1	MA0147.1	0.0165
MA0148.1	MA0148.1	0.0023
MA0149.1	MA0149.1	0.185
MA0150.1	MA0150.1	0.00104
MA0152.1	MA0152.1	0.187
MA0153.1	MA0153.1	1.2141e-12
MA0154.1	MA0154.1	0.0497
MA0155.1	MA0155.1	0.94
MA0156.1	MA0156.1	0.204
MA0157.1	MA0157.1	0.106
MA0159.1	MA0159.1	1.15939e-4
MA0160.1	MA0160.1	0.689
MA0162.1	MA0162.1	0.153
MA0163.1	MA0163.1	0.819
MA0164.1	MA0164.1	0.577
MA0258.1	MA0258.1	0.00192
MA0259.1	MA0259.1	0.0338

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11029

Novel motif	Logo	P-value
1	1	0.199
10	10	0.43
100	100	0.51
101	101	0.545
102	102	0.789
103	103	0.586
104	104	0.899
105	105	0.499
106	106	4.20138e-4
107	107	0.00813
108	108	0.645
109	109	0.978
11	11	0.393
110	110	0.883
111	111	0.394
112	112	0.587
113	113	0.258
114	114	0.0501
115	115	0.722
116	116	0.725
117	117	0.934
118	118	0.914
119	119	0.138
12	12	0.452
120	120	0.521
121	121	0.801
122	122	0.831
123	123	0.277
124	124	0.131
125	125	0.041
126	126	0.992
127	127	0.109
128	128	1.89609e-4
129	129	0.141
13	13	0.923
130	130	0.372
131	131	0.746
132	132	0.772
133	133	0.845
134	134	0.457
135	135	0.54
136	136	0.0463
137	137	0.844
138	138	0.373
139	139	0.163
14	14	0.0928
140	140	0.339
141	141	0.304
142	142	0.84
143	143	0.199
144	144	0.0962
145	145	0.929
146	146	0.317
147	147	0.806
148	148	0.0911
149	149	0.39
15	15	0.101
150	150	0.953
151	151	0.0568
152	152	0.577
153	153	0.285
154	154	0.873
155	155	0.684
156	156	0.00471
157	157	0.428
158	158	0.124
159	159	0.0223
160	160	0.691
161	161	0.619
162	162	0.573
163	163	0.0248
164	164	0.989
165	165	0.0615
166	166	0.736
167	167	0.284
168	168	0.658
169	169	0.916
17	17	0.153
18	18	0.182
19	19	0.596
2	2	0.454
20	20	0.664
21	21	0.477
22	22	0.781
23	23	0.107
24	24	0.892
25	25	0.391
26	26	0.821
27	27	0.277
28	28	0.248
29	29	0.45
3	3	0.229
30	30	0.851
31	31	0.176
32	32	0.539
33	33	0.293
34	34	0.896
35	35	0.0494
36	36	0.474
37	37	0.228
38	38	0.718
39	39	0.911
4	4	0.878
40	40	0.911
41	41	0.0952
42	42	0.566
43	43	0.244
44	44	0.443
45	45	0.354
46	46	0.137
47	47	0.534
48	48	0.443
49	49	0.134
5	5	0.0565
50	50	0.767
51	51	0.794
52	52	0.116
53	53	0.86
54	54	0.355
55	55	0.276
56	56	0.302
57	57	0.758
58	58	0.325
59	59	0.602
6	6	0.814
60	60	0.0327
61	61	0.876
62	62	0.135
63	63	0.248
64	64	0.863
65	65	0.338
66	66	0.297
67	67	0.484
68	68	8.8302e-4
69	69	0.573
7	7	0.449
70	70	0.0143
71	71	0.231
72	72	0.811
73	73	0.466
74	74	0.928
75	75	0.459
76	76	0.797
77	77	0.414
78	78	0.281
79	79	0.926
8	8	0.253
80	80	0.077
81	81	0.331
82	82	0.46
83	83	0.528
84	84	0.187
85	85	0.00554
86	86	0.0997
87	87	0.277
88	88	0.92
89	89	0.021
9	9	0.851
90	90	0.178
91	91	0.601
92	92	0.161
93	93	0.441
94	94	0.224
95	95	0.489
96	96	0.422
97	97	0.806
98	98	0.126
99	99	0.737

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11029

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011372 mouse testis- embryo E17 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011372 (mouse testis- embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0003135,UBERON:0005291,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0006598,UBERON:0003886,UBERON:0004176,UBERON:0002532,UBERON:0003101,UBERON:0000079,UBERON:0009196,UBERON:0009117,UBERON:0006603,UBERON:0005564
+|DRA_sample_Accession=CAGE@SAMD00005862
+|accession_numbers=CAGE;DRX009105;DRR009979;DRZ001404;DRZ002787;DRZ012754;DRZ014137
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000300,FF:0011372
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:140739014..140739032,-!p1@Lhx9!2.17!184.18!Lhx9;;chr10:22539932..22539956,-!p1@Tcf21!2.10!318.77!Tcf21;;chrX:90531838..90531861,+!p1@Arx!2.04!134.84!Arx;;chr2:38570011..38570034,-!p1@Nr5a1!2.03!106.94!Nr5a1;;chr14:63864056..63864102,-!p1@Gata4!1.91!135.10!Gata4;;chr7:147129712..147129774,+!p1@Utf1!1.75!55.02!Utf1;;chr1:168168856..168168893,-!p1@Mael!1.55!34.23!Mael;;chr1:168168817..168168850,-!p2@Mael!1.53!33.19!Mael;;chr15:102828658..102828678,+!p1@Hoxc6!1.44!26.74!Hoxc6;;chr2:74529970..74529997,+!p1@Hoxd10!1.39!23.77!Hoxd10;;chr2:74536026..74536039,+!p1@Hoxd9!1.27!17.69!Hoxd9;;chr12:34642510..34642530,+!p1@Twist1!1.26!53.99!Twist1;;chr15:35225845..35225867,+!p1@Osr2!1.26!42.75!Osr2;;chr10:126778916..126778974,-!p1@Gli1!1.26!37.84!Gli1;;chr2:74549968..74549996,+!p1@Hoxd3!1.26!21.31!Hoxd3;;chr2:104966766..104966786,+!p1@Wt1!1.24!25.83!Wt1;;chr17:25707623..25707639,-!p1@Sox8!1.17!58.12!Sox8;;chr2:104966874..104966907,+!p2@Wt1!1.17!13.95!Wt1;;chr19:25580110..25580163,+!p1@Dmrt1!1.15!13.05!Dmrt1;;chr2:152758901..152758925,-!p1@Foxs1!1.14!56.70!Foxs1;;chrX:83437105..83437121,+!p1@Nr0b1!1.12!12.27!Nr0b1;;chr11:85646303..85646329,+!p1@Tbx2!1.07!71.81!Tbx2;;chr12:3891810..3891829,+!p2@Dnmt3a!1.01!14.47!Dnmt3a;;chr2:74536050..74536065,+!p2@Hoxd9!1.00!9.04!Hoxd9;;chr2:169458799..169458832,+!p5@Tshz2!0.99!14.60!Tshz2;;chr2:152758938..152758954,-!p2@Foxs1!0.99!12.14!Foxs1;;chr5:31271028..31271040,+!p1@Tcf23!0.99!8.78!Tcf23;;chr17:35642973..35642994,+!p2@Pou5f1!0.97!8.27!Pou5f1;;chr2:74550015..74550057,+!p2@Hoxd3!0.96!8.14!Hoxd3;;chr2:104966933..104966966,+!p3@Wt1!0.95!7.88!Wt1;;chr14:63890459..63890484,-!p4@Gata4!0.94!7.62!Gata4;;chr15:102828642..102828653,+!p2@Hoxc6!0.94!7.62!Hoxc6;;chr11:85646263..85646278,+!p2@Tbx2!0.93!19.89!Tbx2;;chr14:63890660..63890687,-!p7@Gata4!0.93!7.49!Gata4;;chr2:74529998..74530020,+!p2@Hoxd10!0.93!7.49!Hoxd10;;chr10:77512581..77512592,+!p3@Dnmt3l!0.92!7.23!Dnmt3l;;chr14:63864337..63864381,-!p6@Gata4!0.91!7.10!Gata4;;chr17:35642997..35643014,+!p1@Pou5f1!0.91!7.10!Pou5f1;;chr1:120879128..120879183,-!p3@Gli2!0.90!13.56!Gli2;;chr2:104966465..104966479,+!p6@Wt1!0.90!6.97!Wt1;;chr15:75578748..75578752,-!p1@Mafa!0.89!6.85!Mafa;;chr2:74535796..74535808,+!p3@Hoxd9!0.89!6.72!Hoxd9;;chr1:38684260..38684312,-!p2@Aff3!0.88!48.95!Aff3;;chr2:180377386..180377462,-!p1@Tcfl5!0.88!8.14!Tcfl5;;chr14:63890491..63890516,-!p2@Gata4!0.87!6.33!Gata4;;chr10:12810631..12810649,+!p1@Plagl1!0.86!172.17!Plagl1;;chrX:45245679..45245702,-!p1@Smarca1!0.86!29.71!Smarca1;;chr2:25702844..25702859,-!p1@Sohlh1!0.85!6.07!Sohlh1;;chr4:133109285..133109308,+!p1@Nr0b2!0.83!5.81!Nr0b2;;chr19:59533221..59533271,+!p1@Emx2!0.82!6.97!Emx2;;chr1:140739042..140739054,-!p2@Lhx9!0.82!5.68!Lhx9;;chr4:122911086..122911112,+!p1@Heyl!0.80!67.68!Heyl;;chr2:169458192..169458247,+!p1@Tshz2!0.80!51.53!Tshz2;;chr12:3891753..3891801,+!p4@Dnmt3a!0.80!9.04!Dnmt3a;;chr2:91864300..91864379,-!p2@Creb3l1!0.78!15.50!Creb3l1;;chr13:83712735..83712761,+!p9@Mef2c!0.78!5.04!Mef2c;;chr7:17647736..17647772,-!p1@Hif3a!0.77!18.60!Hif3a;;chr18:11052485..11052508,+!p2@Gata6!0.77!14.98!Gata6;;chr2:38567715..38567730,-!p2@Nr5a1!0.77!4.91!Nr5a1;;chrX:45245644..45245666,-!p2@Smarca1!0.76!16.40!Smarca1;;chr7:77511403..77511450,-!p3@Nr2f2!0.76!10.72!Nr2f2;;chr10:5734525..5734569,-!p3@Esr1!0.76!8.27!Esr1;;chr4:119960301..119960359,-!p1@Foxo6!0.75!16.14!Foxo6;;chr2:30700788..30700824,+!p2@Prrx2!0.75!7.36!Prrx2;;chr7:77505617..77505632,-!p1@Nr2f2!0.74!235.20!Nr2f2;;chr9:36954842..36954908,-!p1@Pknox2!0.74!57.73!Pknox2;;chr2:104966662..104966673,+!p4@Wt1!0.74!4.52!Wt1;;chr14:63890519..63890539,-!p3@Gata4!0.74!4.52!Gata4;;chr12:9581262..9581282,+!p1@Osr1!0.73!59.16!Osr1;;chr11:85646341..85646352,+!p3@Tbx2!0.73!9.30!Tbx2;;chr14:63890691..63890718,-!p8@Gata4!0.73!4.39!Gata4;;chr7:147129680..147129693,+!p3@Utf1!0.73!4.39!Utf1;;chr18:11052456..11052477,+!p3@Gata6!0.72!14.34!Gata6;;chr10:80809447..80809515,-!p5@Hmg20b!0.72!5.30!Hmg20b;;chr11:98826178..98826197,+!p7@Rara!0.72!4.26!Rara;;chr2:74543202..74543213,+!p3@Hoxd8!0.71!4.13!Hoxd8;;chr19:25580226..25580261,+!p2@Dmrt1!0.70!4.00!Dmrt1;;chr8:26958093..26958148,-!p2@Ash2l!0.70!4.00!Ash2l;;chr7:6649134..6649167,-!p1@Zim1!0.69!24.15!Zim1;;chr6:72850124..72850210,-!p7@Kcmf1!0.69!5.30!Kcmf1;;chr4:84320893..84320910,-!p1@Bnc2!0.68!9.17!Bnc2;;chr11:98826125..98826141,+!p12@Rara!0.68!3.75!Rara;;chr11:74981654..74981658,-!p1@Hic1!0.67!16.40!Hic1;;chr12:34642682..34642753,+!p2@Twist1!0.67!10.98!Twist1;;chr2:169458519..169458555,+!p2@Tshz2!0.66!16.66!Tshz2;;chr2:152223441..152223465,-!p2@Sox12!0.66!16.66!Sox12;;chr2:74536071..74536083,+!p4@Hoxd9!0.66!3.62!Hoxd9;;chr15:76701495..76701535,-!p3@Zfp251!0.66!3.62!Zfp251;;chr11:5761889..5761969,+!p1@Aebp1!0.65!168.68!Aebp1;;chr5:31271010..31271019,+!p2@Tcf23!0.65!3.49!Tcf23;;chr12:77278238..77278252,-!p1@Esr2!0.65!3.49!Esr2;;chr11:52096804..52096896,-!p1@Tcf7!0.64!31.77!Tcf7;;chr11:5761979..5761992,+!p2@Aebp1!0.64!7.62!Aebp1;;chr2:74543103..74543135,+!p4@Hoxd8!0.64!3.36!Hoxd8;;chr15:81633165..81633188,+!p2@Tef!0.63!31.64!Tef;;chr7:77511622..77511657,-!p5@Nr2f2!0.63!4.39!Nr2f2;;chr7:6615049..6615056,-!p1@uc009fbu.1!0.63!3.23!Zim2;;chr10:77512605..77512612,+!p7@Dnmt3l!0.63!3.23!Dnmt3l;;chr14:76904313..76904328,+!p1@Tsc22d1!0.62!731.30!Tsc22d1;;chr14:65977324..65977372,+!p2@Zfp395!0.62!20.92!Zfp395;;chr1:38684383..38684394,-!p4@Aff3!0.62!4.52!Aff3;;chr15:103164702..103164778,-!p3@Zfp385a!0.62!3.87!Zfp385a;;chr2:74542918..74542971,+!p1@Hoxd8!0.61!5.04!Hoxd8;;chrX:35474351..35474366,+!p1@Rhox13!0.61!3.10!Rhox13;;chr1:120949949..120950000,-!p1@Gli2!0.60!15.37!Gli2;;chr2:91864449..91864492,-!p3@Creb3l1!0.60!5.30!Creb3l1;;chr2:74549945..74549965,+!p4@Hoxd3!0.60!2.97!Hoxd3;;chr2:25562346..25562433,+!p1@Bmyc!0.59!65.35!Bmyc;;chr8:90483433..90483457,-!p2@Zfp423!0.59!4.13!Zfp423;;chr10:5636374..5636421,-!p1@Esr1!0.58!3.75!Esr1;;chr15:75578637..75578669,-!p2@Mafa!0.58!3.23!Mafa;;chr15:102820964..102821006,+!p1@Hoxc8!0.58!2.84!Hoxc8;;chr7:147129777..147129814,+!p2@Utf1!0.58!2.84!Utf1;;chr11:102177921..102177960,-!p9@Ubtf!0.57!4.26!Ubtf;;chr10:5636354..5636373,-!p2@Esr1!0.57!2.71!Esr1;;chr2:24331085..24331100,-!p1@Pax8!0.57!2.71!Pax8;;chr2:74543397..74543435,+!p2@Hoxd8!0.57!2.71!Hoxd8;;chr15:35225873..35225889,+!p2@Osr2!0.57!2.71!Osr2;;chr2:181194069..181194144,-!p1@Zbtb46!0.56!18.08!Zbtb46;;chr7:52471143..52471186,+!p1@Tead2!0.55!33.97!Tead2;;chr15:76287876..76287894,+!p1@Scx!0.55!17.31!Scx;;chr8:90483459..90483475,-!p1@Zfp423!0.55!8.27!Zfp423;;chr2:169458838..169458859,+!p4@Tshz2!0.55!5.81!Tshz2;;chr2:152223586..152223604,-!p5@Sox12!0.55!4.00!Sox12;;chr2:104966436..104966455,+!p7@Wt1!0.55!2.58!Wt1;;chr2:74542974..74542986,+!p5@Hoxd8!0.55!2.58!Hoxd8;;chr4:84321317..84321332,-!p4@Bnc2!0.55!2.58!Bnc2;;chr7:77511234..77511302,-!p2@Nr2f2!0.54!20.67!Nr2f2;;chr2:169458352..169458397,+!p3@Tshz2!0.54!7.36!Tshz2;;chr1:120949925..120949947,-!p4@Gli2!0.54!5.55!Gli2;;chr4:122911056..122911065,+!p2@Heyl!0.54!4.13!Heyl;;chr7:89137163..89137200,-!p1@Bnc1!0.54!3.10!Bnc1;;chr2:25702816..25702827,-!p2@Sohlh1!0.54!2.45!Sohlh1;;chr5:31270977..31270988,+!p3@Tcf23!0.54!2.45!Tcf23;;chr4:3865501..3865548,-!p1@Plag1!0.53!15.37!Plag1;;chr13:22036953..22037009,+!p1@Zfp184!0.53!7.62!Zfp184;;chr15:40486883..40486903,+!p4@Zfpm2!0.53!3.49!Zfpm2;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!0.53!3.49!Eno1;;chr18:74375754..74375763,+!p4@Cxxc1!0.53!3.10!Cxxc1;;chr12:12948633..12948651,-!p1@Mycn!0.52!28.42!Mycn;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.52!6.72!Zbtb11;;chr5:24107676..24107722,-!p4@Smarcd3!0.52!3.36!Smarcd3;;chr4:84321280..84321298,-!p5@Bnc2!0.52!2.32!Bnc2;;chr2:105003277..105003280,+!p5@Wt1!0.52!2.32!Wt1;;chr15:102820946..102820961,+!p3@Hoxc8!0.52!2.32!Hoxc8;;chr15:102839948..102839975,+!p3@Hoxc6!0.52!2.32!Hoxc6;;chr4:62626594..62626651,+!p1@Zfp618!0.51!10.59!Zfp618;;chr7:37483021..37483078,+!p1@Tshz3!0.51!8.40!Tshz3;;chr15:81633203..81633215,+!p3@Tef!0.51!4.00!Tef;;chr4:128483534..128483613,-!p1@Zfp362!0.50!19.50!Zfp362;;chr7:26067619..26067702,+!p2@Cic!0.50!15.63!Cic;;chr11:85646469..85646488,+!p5@Tbx2!0.50!3.62!Tbx2;;chr19:26822880..26822964,+!p2@Smarca2!0.49!23.25!Smarca2;;chr5:125538737..125538781,-!p2@Ncor2!0.49!9.56!Ncor2;;chr7:19679964..19679982,+!p1@Six5!0.49!7.36!Six5;;chr15:50720601..50720630,-!p2@Trps1!0.49!6.07!Trps1;;chr2:169458496..169458516,+!p6@Tshz2!0.49!5.30!Tshz2;;chr7:17642053..17642066,-!p2@Hif3a!0.49!3.23!Hif3a;;chr4:154335024..154335039,+!p1@Hes5!0.49!2.71!Hes5;;chr2:74529942..74529953,+!p4@Hoxd10!0.49!2.07!Hoxd10;;chr8:87425854..87425891,+!p1@Klf1!0.49!2.07!Klf1;;chr19:59533139..59533152,+!p2@Emx2!0.49!2.07!Emx2;;chr5:138187341..138187406,+!p3@Tsc22d4!0.48!29.19!Tsc22d4;;chr18:75527030..75527055,+!p2@Smad7!0.48!16.92!Smad7;;chr2:152223881..152223933,-!p3@Sox12!0.48!8.65!Sox12;;chr1:9690424..9690467,-!p1@Mybl1!0.48!5.04!Mybl1;;chr14:56443806..56443848,+!p1@Nfatc4!0.48!4.91!Nfatc4;;chr11:85646427..85646451,+!p4@Tbx2!0.48!4.13!Tbx2;;chr15:102865088..102865107,+!p1@Hoxc4!0.48!2.97!Hoxc4;;chr14:55711114..55711159,-!p2@Zfhx2!0.47!5.30!Zfhx2;;chr15:102797288..102797302,+!p1@Hoxc10!0.47!1.94!Hoxc10;;chr14:32979060..32979091,+!p4@Gm6768,p4@Ncoa4!0.47!1.94!Ncoa4;;chr2:91864661..91864686,-!p1@Creb3l1!0.46!56.83!Creb3l1;;chr2:167363692..167363710,+!p1@Snai1!0.46!31.90!Snai1;;chr9:122832168..122832210,+!p1@Zfp105!0.46!19.63!Zfp105;;chr15:40486566..40486600,+!p1@Zfpm2!0.46!14.85!Zfpm2;;chr7:77511311..77511352,-!p4@Nr2f2!0.46!4.65!Nr2f2;;chr4:84321300..84321315,-!p2@Bnc2!0.46!2.45!Bnc2;;chr15:40486754..40486771,+!p2@Zfpm2!0.45!3.75!Zfpm2;;chr3:130815472..130815497,+!p6@Lef1!0.45!1.81!Lef1;;chr16:14705925..14705951,+!p1@Snai2!0.44!17.18!Snai2;;chr11:98821749..98821799,+!p2@Rara!0.44!14.98!Rara;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.44!14.08!Zbtb11;;chr6:48395825..48395846,-!p3@Zfp467!0.44!9.04!Zfp467;;chr1:120950098..120950132,-!p2@Gli2!0.44!5.04!Gli2;;chr2:30700881..30700916,+!p1@Prrx2!0.44!4.00!Prrx2;;chr8:72498017..72498059,-!p13@Gatad2a!0.44!3.49!Gatad2a;;chr18:75527009..75527027,+!p1@Smad7!0.43!50.50!Smad7;;chrX:70587953..70587968,+!p1@Zfp275!0.43!26.22!Zfp275;;chr18:11052642..11052659,+!p1@Gata6!0.43!11.62!Gata6;;chr2:152223783..152223812,-!p4@Sox12!0.43!4.91!Sox12;;chr12:9581317..9581333,+!p3@Osr1!0.43!2.97!Osr1;;chr7:52472041..52472065,+!p2@Tead2!0.43!2.07!Tead2;;chr7:25655099..25655143,+!p1@Dmrtc2!0.43!1.68!Dmrtc2;;chr19:25580272..25580305,+!p3@Dmrt1!0.43!1.68!Dmrt1;;chr11:98603160..98603171,+!p3@Thra!0.42!10.46!Thra;;chr18:65741358..65741415,+!p1@Zfp532!0.42!9.69!Zfp532;;chr17:47278081..47278103,+!p1@Trerf1!0.42!4.91!Trerf1;;chr2:34227446..34227511,-!p1@Pbx3!0.42!4.78!Pbx3;;chr14:22807216..22807231,-!p3@Zfp503!0.42!3.36!Zfp503;;chrX:45245621..45245632,-!p3@Smarca1!0.42!2.58!Smarca1;;chr1:38684414..38684427,-!p7@Aff3!0.42!2.07!Aff3;;chr2:84877369..84877459,+!p1@Ssrp1!0.41!48.95!Ssrp1;;chr12:28027561..28027591,-!p1@Sox11!0.41!14.85!Sox11;;chr7:25372631..25372684,-!p1@Zfp575!0.41!6.46!Zfp575;;chr10:75384291..75384298,-!p2@Smarcb1!0.41!4.39!Smarcb1;;chr2:30700857..30700873,+!p3@Prrx2!0.41!2.45!Prrx2;;chr7:17642018..17642045,-!p4@Hif3a!0.41!1.94!Hif3a;;chr6:52190467..52190500,-!p1@Hoxa10!0.41!1.55!Hoxa10;;chr2:74530022..74530033,+!p3@Hoxd10!0.41!1.55!Hoxd10;;chr2:74543235..74543246,+!p7@Hoxd8!0.41!1.55!Hoxd8;;chr15:102821007..102821021,+!p2@Hoxc8!0.41!1.55!Hoxc8;;chr14:63890545..63890560,-!p5@Gata4!0.41!1.55!Gata4;;chr11:112643496..112643562,+!p1@Sox9!0.40!84.60!Sox9;;chr2:25562315..25562344,+!p3@Bmyc!0.40!6.85!Bmyc;;chr18:74375772..74375799,+!p2@Cxxc1!0.40!5.94!Cxxc1;;chr17:28487603..28487626,-!p2@Tead3!0.40!4.13!Tead3;;chr4:97439519..97439539,+!p11@Nfia!0.40!4.13!Nfia;;chr11:101755669..101755686,-!p1@Meox1!0.40!3.36!Meox1;;chr11:18918434..18918489,-!p3@Meis1!0.40!2.84!Meis1;;chr2:156666727..156666753,+!p2@Tgif2!0.40!2.58!Tgif2;;chr14:56443781..56443800,+!p3@Nfatc4!0.40!2.20!Nfatc4;;chr15:102865131..102865151,+!p2@Hoxc4!0.40!1.81!Hoxc4;;chr8:118230894..118230918,-!p5@Maf!0.39!5.68!Maf;;chr7:30954700..30954715,-!p2@LOC677248,p2@Zfp146!0.39!4.52!Zfp146;;chr4:128483731..128483757,-!p4@Zfp362!0.39!4.39!Zfp362;;chr1:93698030..93698064,+!p1@Twist2!0.39!3.75!Twist2;;chr15:81633116..81633125,+!p6@Tef!0.39!1.81!Tef;;chr17:48061584..48061601,-!p2@Foxp4!0.38!13.69!Foxp4;;chr16:14705961..14705978,+!p2@Snai2!0.38!9.56!Snai2;;chr2:25562263..25562314,+!p2@Bmyc!0.38!7.88!Bmyc;;chr14:65977427..65977452,+!p4@Zfp395!0.38!4.65!Zfp395;;chr18:76401074..76401118,+!p3@Smad2!0.38!4.26!Smad2;;chr3:5218590..5218614,+!p3@Zfhx4!0.38!2.97!Zfhx4;;chr15:40486427..40486437,+!p5@Zfpm2!0.38!2.07!Zfpm2;;chr10:126779021..126779032,-!p2@Gli1!0.38!1.94!Gli1;;chr2:104966909..104966920,+!p8@Wt1!0.38!1.42!Wt1;;chr19:59533595..59533628,+!p6@Emx2!0.38!1.42!Emx2;;chr19:59533163..59533185,+!p3@Emx2!0.38!1.42!Emx2;;chr6:30908793..30908815,-!p1@Klf14!0.38!1.42!Klf14;;chr8:72676653..72676668,+!p4@2310045N01Rik,p4@Mef2b!0.38!1.42!Mef2b;;chr1:170362040..170362113,-!p2@Pbx1!0.37!16.14!Pbx1;;chr13:55431084..55431137,-!p1@Mxd3!0.37!16.02!Mxd3;;chr2:152223469..152223512,-!p1@Sox12!0.37!10.46!Sox12;;chr2:92886297..92886329,-!p1@Prdm11!0.37!9.17!Prdm11;;chr7:26067242..26067273,+!p3@Cic!0.37!8.40!Cic;;chr12:9581284..9581303,+!p2@Osr1!0.37!3.36!Osr1;;chr6:52163319..52163342,-!p1@Hoxa3!0.37!2.32!Hoxa3;;chr15:81575487..81575561,+!p1@Zc3h7b!0.36!44.43!Zc3h7b;;chr14:22807083..22807104,-!p1@Zfp503!0.36!36.42!Zfp503;;chr17:71200529..71200556,-!p1@Tgif1!0.36!33.06!Tgif1;;chr16:4594740..4594759,+!p1@Glis2!0.36!23.12!Glis2;;chr14:65977498..65977528,+!p1@Zfp395!0.36!13.30!Zfp395;;chr2:130120884..130120972,+!p1@Ebf4!0.36!11.37!Ebf4;;chr15:75447105..75447159,+!p1@Zfp41!0.36!7.62!Zfp41;;chr14:65977459..65977489,+!p3@Zfp395!0.36!6.59!Zfp395;;chr17:71202822..71202877,-!p3@Tgif1!0.36!5.30!Tgif1;;chr18:65741935..65741964,+!p2@Zfp532!0.36!5.04!Zfp532;;chr15:40486458..40486467,+!p9@Zfpm2!0.36!1.68!Zfpm2;;chr15:103082088..103082136,-!p2@Nfe2!0.36!1.29!Nfe2;;chr2:74560109..74560131,+!p1@Hoxd4!0.36!1.29!Hoxd4;;chr3:130815455..130815467,+!p10@Lef1!0.36!1.29!Lef1;;chr11:52095821..52095836,-!p3@Tcf7!0.36!1.29!Tcf7;;chr19:59534008..59534046,+!p7@Emx2!0.36!1.29!Emx2;;chr11:18918959..18918976,-!p2@Meis1!0.35!27.25!Meis1;;chr16:4594683..4594735,+!p2@Glis2!0.35!25.57!Glis2;;chr4:97444012..97444045,+!p4@Nfia!0.35!14.60!Nfia;;chr13:96095150..96095184,+!p2@Zbed3!0.35!13.56!Zbed3;;chr11:99092233..99092273,-!p2@Smarce1!0.35!9.17!Smarce1;;chr3:94641455..94641486,+!p4@Pogz!0.35!4.65!Pogz;;chr18:7004715..7004731,-!p1@Mkx!0.35!4.13!Mkx;;chr17:34729160..34729171,+!p3@Pbx2!0.35!3.23!Pbx2;;chr18:76219118..76219155,+!p1@Zbtb7c!0.35!2.84!Zbtb7c;;chr12:9581243..9581254,+!p4@Osr1!0.35!2.07!Osr1;;chrX:45245582..45245591,-!p4@Smarca1!0.35!1.68!Smarca1;;chr6:37392095..37392154,-!p1@Creb3l2!0.34!62.64!Creb3l2;;chr2:181406327..181406350,-!p1@Sox18!0.34!60.96!Sox18;;chr2:84877605..84877687,+!p3@Ssrp1!0.34!11.24!Ssrp1;;chr7:6238191..6238224,+!p1@Zfp667!0.34!11.24!Zfp667;;chrX:53599567..53599592,+!p1@Zfp449!0.34!7.62!Zfp449;;chr4:128483680..12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p1r13l!0.25!1.81!Ppp1r13l;;chr4:135700687..135700719,+!p2@Id3!0.25!1.68!Id3;;chr12:25336286..25336297,+!p2@Klf11!0.25!1.55!Klf11;;chr7:17200198..17200209,-!p8@Grlf1!0.25!1.29!Grlf1;;chr7:20162663..20162678,+!p1@Zfp296!0.25!1.29!Zfp296;;chr18:76219161..76219176,+!p4@Zbtb7c!0.25!1.29!Zbtb7c;;chr18:11052516..11052525,+!p5@Gata6!0.25!0.77!Gata6;;chr17:35031631..35031645,+!p5@Zbtb12!0.25!0.77!Zbtb12;;chr16:30064250..30064282,+!p6@Hes1!0.25!0.77!Hes1;;chr12:12947199..12947213,-!p2@Mycn!0.25!0.77!Mycn;;chr15:102839976..102839989,+!p4@Hoxc6!0.25!0.77!Hoxc6;;chr15:102797225..102797243,+!p2@Hoxc10!0.25!0.77!Hoxc10;;chr4:89354729..89354776,+!p1@Dmrta1!0.25!0.77!Dmrta1;;chrX:83437070..83437078,+!p2@Nr0b1!0.25!0.77!Nr0b1;;chrX:35419715..35419724,+!p1@Rhox10!0.25!0.77!Rhox10;;chr8:73222425..73222444,+!p2@Jund!0.25!0.77!Jund;;chr2:169968173..169968178,-!p2@Zfp217!0.25!0.77!Zfp217;;chr2:168592591..168592604,-!p2@Sall4!0.25!0.77!Sall4;;chr2:180377331..180377344,-!p3@Tcfl5!0.25!0.77!Tcfl5;;chr2:104966636..104966641,+!p12@Wt1!0.25!0.77!Wt1;;chr2:30700830..30700843,+!p4@Prrx2!0.25!0.77!Prrx2;;chr5:125659525..125659599,-!p1@Ncor2!0.24!96.22!Ncor2;;chr6:90319480..90319651,+!p1@Zxdc!0.24!40.56!Zxdc;;chr7:35904304..35904320,+!p1@Cebpa!0.24!31.51!Cebpa;;chr1:33871252..33871313,-!p2@Zfp451!0.24!18.21!Zfp451;;chr9:121669118..121669179,+!p1@Zfp651!0.24!16.14!Zfp651;;chr7:13551180..13551243,+!p1@Zfp324!0.24!12.27!Zfp324;;chrY:234225..234243,+!p1@Kdm5d,p1@LOC100040412!0.24!11.50!Kdm5d;;chr18:76401314..76401395,+!p2@Smad2!0.24!10.46!Smad2;;chr7:11080671..11080750,-!p1@Zik1!0.24!10.20!Zik1;;chr15:100325682..100325698,-!p1@Csrnp2!0.24!6.59!Csrnp2;;chr18:84255649..84255661,-!p4@Tshz1!0.24!3.36!Tshz1;;chr18:69681439..69681456,+!p7@Tcf4!0.24!3.23!Tcf4;;chr12:75009172..75009223,+!p3@Hif1a!0.24!3.10!Hif1a;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.24!1.55!Ppp1r13l;;chr6:52167513..52167549,-!p2@Hoxa7!0.24!1.42!Hoxa7;;chr15:100058302..100058309,+!p3@Gm1862,p5@Atf1!0.24!1.42!Atf1;;chr18:65741911..65741929,+!p3@Zfp532!0.24!1.29!Zfp532;;chr2:77654815..77654872,-!p2@Zfp385b!0.24!1.16!Zfp385b;;chr5:125538905..125538910,-!p4@Ncor2!0.24!1.16!Ncor2;;chr17:37139519..37139531,+!p5@Zfp57!0.24!1.03!Zfp57;;chr16:30066499..30066518,+!p5@Hes1!0.24!1.03!Hes1;;chr9:30838314..30838336,+!p4@Zbtb44!0.24!1.03!Zbtb44;;chr7:26067803..26067814,+!p11@Cic!0.24!0.90!Cic;;chr10:80889867..80889924,-!p1@Nfic!0.23!42.62!Nfic;;chr2:44968512..44968530,-!p1@Zeb2!0.23!33.45!Zeb2;;chr1:136456767..136456790,+!p2@Kdm5b!0.23!31.13!Kdm5b;;chr2:115891534..115891589,-!p1@Meis2!0.23!21.18!Meis2;;chr2:165213745..165213815,-!p1@Zfp334!0.23!12.92!Zfp334;;chr13:67601387..67601448,-!p2@Zfp58!0.23!11.88!Zfp58;;chr8:107694742..107694823,+!p3@Cbfb!0.23!8.52!Cbfb;;chr7:30568977..30569047,+!p1@Zfp30!0.23!7.88!Zfp30;;chr7:50834947..50835010,+!p2@Zfp719!0.23!7.36!Zfp719;;chr13:64254457..64254497,-!p1@Zfp367!0.23!6.07!Zfp367;;chrX:132420525..132420558,+!p3@Bhlhb9!0.23!5.81!Bhlhb9;;chr4:120624269..120624302,-!p1@Zfp69!0.23!4.78!Zfp69;;chr10:79896328..79896339,-!p3@Tcf3!0.23!4.52!Tcf3;;chr4:54957910..54957954,+!p2@Zfp462!0.23!3.87!Zfp462;;chr2:44966659..44966675,-!p7@Zeb2!0.23!3.75!Zeb2;;chr8:87324292..87324303,-!p4@Nfix!0.23!2.71!Nfix;;chr2:153475178..153475196,+!p1@Dnmt3b!0.23!2.45!Dnmt3b;;chr11:3189683..3189744,+!p2@Patz1!0.23!2.32!Patz1;;chr4:82151583..82151594,-!p6@Nfib!0.23!2.20!Nfib;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.23!2.20!Gm8008;;chr7:13420092..13420160,+!p2@Zfp110!0.23!2.07!Zfp110;;chr1:38684431..38684450,-!p3@Aff3!0.23!1.68!Aff3;;chr11:102178005..102178022,-!p8@Ubtf!0.23!1.68!Ubtf;;chr13:67476665..67476693,-!p2@Zfp456!0.23!1.55!Zfp456;;chr11:98605517..98605539,+!p5@Thra!0.23!1.42!Thra;;chr8:118231350..118231385,-!p7@Maf!0.23!1.42!Maf;;chr10:88145766..88145770,-!p1@Spic!0.23!1.16!Spic;;chr2:25562241..25562250,+!p4@Bmyc!0.23!0.90!Bmyc;;chr5:77694479..77694574,+!p1@Rest!0.22!31.26!Rest;;chr15:81977802..81977828,+!p2@Srebf2!0.22!12.14!Srebf2;;chr6:53018556..53018650,-!p1@Jazf1!0.22!9.30!Jazf1;;chr2:162880327..162880385,+!p2@Mybl2!0.22!9.30!Mybl2;;chr1:64168830..64168895,-!p2@Klf7!0.22!9.04!Klf7;;chr10:30522690..30522752,-!p2@Ncoa7!0.22!8.40!Ncoa7;;chr17:84105510..84105540,+!p2@Mta3!0.22!7.23!Mta3;;chr9:96159665..96159680,+!p3@Tfdp2!0.22!6.20!Tfdp2;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.22!5.17!Ppp1r13l;;chr10:30523091..30523182,-!p4@Ncoa7!0.22!4.39!Ncoa7;;chr7:134489096..134489123,-!p2@Zfp768!0.22!3.87!Zfp768;;chr8:107694596..107694619,+!p4@Cbfb!0.22!3.62!Cbfb;;chr15:75447162..75447217,+!p2@Zfp41!0.22!3.62!Zfp41;;chr7:30857891..30857943,-!p1@LOC100505067,p3@Zfp82!0.22!3.23!Zfp82;;chr18:80348151..80348181,-!p2@Adnp2!0.22!3.10!Adnp2;;chr2:31428221..31428244,+!p2@Fubp3!0.22!2.84!Fubp3;;chr1:33871319..33871333,-!p3@Zfp451!0.22!2.84!Zfp451;;chr1:170361826..170361844,-!p9@Pbx1!0.22!2.58!Pbx1;;chr9:63869802..63869815,-!p3@Smad6!0.22!2.20!Smad6;;chr11:3190303..3190351,+!p3@Patz1!0.22!2.20!Patz1;;chr15:50721211..50721234,-!p6@Trps1!0.22!1.68!Trps1;;chr7:31207408..31207450,+!p4@N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mad2;;chr16:14705746..14705761,+!p4@Snai2!0.14!0.39!Snai2;;chr16:14705668..14705683,+!p3@Snai2!0.14!0.39!Snai2;;chr18:69681413..69681424,+!p24@Tcf4!0.14!0.39!Tcf4;;chr2:180069423..180069434,-!p2@Gata5!0.14!0.39!Gata5;;chr1:186556307..186556318,-!p7@Hlx!0.14!0.39!Hlx;;chr1:39777805..39777820,-!p2@Rfx8!0.14!0.39!Rfx8;;chr19:59534052..59534083,+!p8@Emx2!0.14!0.39!Emx2;;chr19:59533206..59533217,+!p9@Emx2!0.14!0.39!Emx2;;chrX:70656436..70656464,+!p1@Zfp92!0.14!0.39!Zfp92;;chr15:25914235..25914246,+!p5@Zfp622!0.14!0.39!Zfp622;;chr15:102839912..102839938,+!p5@Hoxc6!0.14!0.39!Hoxc6;;chr12:87811059..87811072,+!p3@Esrrb!0.14!0.39!Esrrb;;chr15:103085858..103085863,-!p11@Nfe2!0.14!0.39!Nfe2;;chr15:100410635..100410667,-!p4@Pou6f1!0.14!0.39!Pou6f1;;chr15:102820912..102820923,+!p5@Hoxc8!0.14!0.39!Hoxc8;;chr7:77511928..77511937,-!p12@Nr2f2!0.14!0.39!Nr2f2;;chr9:43013917..43013968,-!p1@Pou2f3!0.14!0.39!Pou2f3;;chr8:87297330..87297365,-!p5@Nfix!0.14!0.39!Nfix;;chr9:113840426..113840435,+!p8@Ubp1!0.14!0.39!Ubp1;;chr8:44392404..44392412,-!p3@Zfp42!0.14!0.39!Zfp42;;chr9:21992581..21992593,+!p1@Zfp872!0.14!0.39!Zfp872;;chr7:19953851..19953902,+!p4@Ppp1r13l!0.14!0.39!Ppp1r13l;;chr7:147129659..147129668,+!p4@Utf1!0.14!0.39!Utf1;;chr5:92391970..92391984,+!p5@Thap6!0.14!0.39!Thap6;;chr6:51382662..51382673,+!p3@Nfe2l3!0.14!0.39!Nfe2l3;;chr6:52176144..52176161,-!p2@Hoxa9!0.14!0.39!Hoxa9;;chr7:108966820..108966835,+!p1@Phox2a!0.14!0.39!Phox2a;;chr11:69468501..69468515,+!p2@Sox15!0.14!0.39!Sox15;;chr11:101755710..101755715,-!p2@Meox1!0.14!0.39!Meox1;;chr11:52096732..52096741,-!p6@Tcf7!0.14!0.39!Tcf7;;chr11:96132767..96132796,+!p2@Hoxb9!0.14!0.39!Hoxb9;;chr10:12844757..12844771,+!p2@Plagl1!0.14!0.39!Plagl1;;chr11:98407264..98407295,-!p1@Ikzf3!0.14!0.39!Ikzf3;;chr10:30522660..30522671,-!p10@Ncoa7!0.14!0.39!Ncoa7;;chr11:100721732..100721742,+!p3@Stat5a!0.14!0.39!Stat5a;;chr11:96160360..96160397,+!p3@Hoxb6!0.14!0.39!Hoxb6;;chr11:62271076..62271096,-!p19@Ncor1!0.14!0.39!Ncor1;;chr10:80555398..80555409,-!p2@Creb3l3!0.14!0.39!Creb3l3;;chr12:114336410..114336478,+!p1@Mta1!0.13!38.62!Mta1;;chr17:57074836..57074927,-!p1@Mllt1!0.13!32.68!Mllt1;;chr5:53981912..53981942,+!p1@Rbpj!0.13!23.12!Rbpj;;chr10:41996494..41996549,-!p1@Foxo3!0.13!19.89!Foxo3;;chr4:97444297..97444323,+!p2@Nfia!0.13!18.08!Nfia;;chr6:128312937..128313076,+!p1@Foxm1!0.13!16.40!Foxm1;;chr2:33324013..33324092,-!p1@Zbtb43!0.13!15.76!Zbtb43;;chr11:4604645..4604705,+!p1@Zmat5!0.13!15.24!Zmat5;;chr1:135320989..135321043,-!p1@Sox13!0.13!12.92!Sox13;;chr4:142802594..142802631,-!p1@Prdm2!0.13!11.50!Prdm2;;chr7:134170310..134170341,-!p5@Maz!0.13!10.07!Maz;;chr8:107694628..107694659,+!p1@Cbfb!0.13!10.07!Cbfb;;chr14:52935876..52935928,-!p1@Sall2!0.13!9.17!Sall2;;chr7:5003117..5003159,+!p1@Zfp580!0.13!8.52!Zfp580;;chr2:119698241..119698291,+!p2@Mga!0.13!5.30!Mga;;chr6:37392159..37392172,-!p2@Creb3l2!0.13!4.91!Creb3l2;;chr5:145962698..145962742,-!p1@Zkscan14!0.13!4.91!Zkscan14;;chr7:134169810..134169824,-!p7@Maz!0.13!3.87!Maz;;chr8:72498134..72498156,-!p7@Gatad2a!0.13!3.87!Gatad2a;;chr16:33380851..33380873,+!p3@Zfp148!0.13!3.49!Zfp148;;chr2:160698288..160698358,-!p3@Zhx3!0.13!2.97!Zhx3;;chr15:76755836..76755867,-!p1@Zfp647!0.13!2.71!Zfp647;;chr7:88138532..88138543,+!p3@Zfp592!0.13!2.71!Zfp592;;chr4:97444616..97444631,+!p7@Nfia!0.13!2.58!Nfia;;chr3:30993883..30993898,+!p2@Skil!0.13!2.45!Skil;;chr4:114732112..114732158,+!p1@Tal1!0.13!1.81!Tal1;;chr8:112229540..112229566,+!p2@Zfp821!0.13!1.81!Zfp821;;chr8:72520121..72520135,-!p12@Gatad2a!0.13!1.68!Gatad2a;;chr2:27532479..27532509,+!p3@Rxra!0.13!1.68!Rxra;;chr9:96159147..96159204,+!p2@Tfdp2!0.13!1.42!Tfdp2;;
+|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011372
 |is_obsolete=
+|library_id=CNhs11029
+|library_id_phase_based=2:CNhs11029
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;486
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;486
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E17.CNhs11029.486-18I5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E17.CNhs11029.486-18I5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E17.CNhs11029.486-18I5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E17.CNhs11029.486-18I5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E17.CNhs11029.486-18I5.mm9.nobarcode.rdna.fa.gz
 |name=testis, embryo E17
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11029,LSID732,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.0914178877596585,0,0,0,0,0,-0.0098006512923612,0,0,0,0,0.420229072435082,0,0,0,0,0,0,-0.139137933721132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12953353834577,0,0.0997909775761048,0,0,0.0133404083639264,0.0352168699602088,0.00566374575474682,-0.0765998583169647,-0.0552387281455321,0.00982539484625644,0,0,0,0,0,0,0,0,0,0,0.216376825084212,0.180882303732582,0.0762210183260188,0,0,0,0,0,0,0,0,0,0.0155877309066765,0.0187189391099946,0.117334652929787,-0.10533562560964,0.0386140122195426,0,0.180882303732582,0.0196801952256644,0,0.0527554171614426,0,0.0281235296550118,-0.0144107335918306,-0.189388686222134,0.102050708892674,0,0,0,0,0,0.0527554171614426,-0.0266298923127834,0.155900837815215,-0.0395148339368045,0,0,0,0,0
 |rna_box=18
 |rna_catalog_number=
@@ Line 58: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 78: / Line 97: @@
 |top_motifs=ZNF238:1.68591580377;HIF1A:1.49672305768;HOX{A5,B5}:1.33575459224;NFY{A,B,C}:1.32432757236;MYBL2:1.211729326;GLI1..3:1.1973120601;NRF1:1.18434099458;GFI1:1.13474276676;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.12359860181;STAT1,3:1.08925801027;ZNF143:1.06192266568;RXR{A,B,G}:1.0531864243;SP1:1.00816782403;TEF:1.00406719737;XCPE1{core}:0.994622357492;ZNF423:0.987762026023;GCM1,2:0.964706531934;GFI1B:0.939991242892;FOXP1:0.930315413809;PATZ1:0.892278734326;GATA4:0.890169141527;NKX3-1:0.876035103143;ZNF384:0.830670176359;NKX6-1,2:0.800730227027;NR6A1:0.791157679994;NR5A1,2:0.773724831118;TFAP2{A,C}:0.760459025014;TLX1..3_NFIC{dimer}:0.733800188385;E2F1..5:0.730193539142;NANOG{mouse}:0.723009881382;EP300:0.705393454883;IKZF2:0.695800436302;IKZF1:0.682577940634;EGR1..3:0.679778084407;ZIC1..3:0.643878863084;HSF1,2:0.623395510809;ZBTB16:0.601447020872;FOXP3:0.587450400505;TEAD1:0.578515899199;PAX4:0.560776464188;NFIX:0.552585529317;bHLH_family:0.507069485563;SOX5:0.450439677841;RREB1:0.403422935323;PITX1..3:0.393926151396;EVI1:0.388879090732;CDC5L:0.328075154418;ELK1,4_GABP{A,B1}:0.310142822512;FOXD3:0.308221693821;CRX:0.305092404254;HOXA9_MEIS1:0.297979194301;ADNP_IRX_SIX_ZHX:0.277672321778;GTF2I:0.269406226312;AIRE:0.249897316441;NFATC1..3:0.233189987929;MAZ:0.229116674665;NR1H4:0.2151930383;TAL1_TCF{3,4,12}:0.210201720857;RBPJ:0.204115467741;SOX17:0.196393135987;BREu{core}:0.182638333947;TOPORS:0.17653141945;TFAP4:0.1759959948;ARID5B:0.175731427282;MTE{core}:0.167519097906;POU2F1..3:0.163727124046;MZF1:0.157306902265;YY1:0.149971231409;RFX2..5_RFXANK_RFXAP:0.136040055675;PAX6:0.135755705567;HES1:0.130410258442;GATA6:0.10485944177;DBP:0.10315959565;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.10081387975;ZFP161:0.0991329792701;TFDP1:0.0962721014761;HIC1:0.0934755779013;MYB:0.0890455705723;RFX1:0.0738062546418;ESRRA:0.0658162176071;AHR_ARNT_ARNT2:0.064868398171;ATF4:0.0512423952947;PRRX1,2:0.0361097588047;MTF1:0.0346864790105;SOX{8,9,10}:0.0264490015332;MED-1{core}:0.0143036851917;ESR1:0.0116590622912;SRF:0.00779490028757;POU6F1:-0.00396373362761;UFEwm:-0.00620208288747;HBP1_HMGB_SSRP1_UBTF:-0.015078888063;LEF1_TCF7_TCF7L1,2:-0.0227442676915;TFAP2B:-0.0293318977468;SOX2:-0.0409262250033;PAX5:-0.0414343668904;ZNF148:-0.0478255301389;PAX1,9:-0.0529269886658;FOXL1:-0.0892829107277;KLF4:-0.103487934576;TFCP2:-0.114045774583;CREB1:-0.130613369066;RORA:-0.140897443461;GTF2A1,2:-0.171706873946;SPIB:-0.180982280436;EN1,2:-0.185425115533;REST:-0.196509651812;ATF2:-0.200863288303;POU5F1:-0.20326258469;MEF2{A,B,C,D}:-0.209874244602;RUNX1..3:-0.221635192259;TBP:-0.230697240924;NKX2-3_NKX2-5:-0.252311562257;BACH2:-0.264221077563;ELF1,2,4:-0.266627266669;PBX1:-0.281036224856;NKX2-2,8:-0.302131952209;ALX4:-0.311487285248;BPTF:-0.32303078455;FOX{D1,D2}:-0.340645505435;POU1F1:-0.344161402159;ETS1,2:-0.347219472397;CDX1,2,4:-0.352307132732;SREBF1,2:-0.362777373056;CUX2:-0.3635681951;PAX2:-0.390880551114;AR:-0.391066360666;HAND1,2:-0.404970124799;HLF:-0.418203917806;MAFB:-0.418350540698;TP53:-0.429409947844;MYFfamily:-0.437390225334;FOXN1:-0.446843762724;PRDM1:-0.448541834399;SPZ1:-0.467061216833;ALX1:-0.473943301686;STAT5{A,B}:-0.48169777122;FOXQ1:-0.492983558432;NFKB1_REL_RELA:-0.493076593079;HNF4A_NR2F1,2:-0.503243765813;HMGA1,2:-0.532630032686;NKX2-1,4:-0.546321930862;TBX4,5:-0.547000956161;HNF1A:-0.549366585127;NFIL3:-0.574122708681;GZF1:-0.575824479298;SPI1:-0.589109874543;LHX3,4:-0.594176877487;POU3F1..4:-0.617635550716;SMAD1..7,9:-0.618502237674;ATF6:-0.637428240337;CEBPA,B_DDIT3:-0.642777241161;EBF1:-0.664969316676;NKX3-2:-0.70414729865;DMAP1_NCOR{1,2}_SMARC:-0.717270076153;ZBTB6:-0.72368520877;IRF1,2:-0.730100491285;NFE2:-0.733049725025;FOXA2:-0.750339659413;IRF7:-0.768217463573;LMO2:-0.784982727506;JUN:-0.78754844608;STAT2,4,6:-0.795925044578;OCT4_SOX2{dimer}:-0.805412640196;ONECUT1,2:-0.809409258442;FOX{F1,F2,J1}:-0.828504284568;RXRA_VDR{dimer}:-0.833131946164;FOXO1,3,4:-0.843588565894;VSX1,2:-0.855567641611;T:-0.858094570236;NHLH1,2:-0.858905184604;HMX1:-0.862669580366;FOS_FOS{B,L1}_JUN{B,D}:-0.876132686122;PDX1:-0.878198619622;HOX{A4,D4}:-0.902771769682;FOXM1:-0.910523576443;NANOG:-0.916081023767;TGIF1:-0.919323726943;TLX2:-0.929524779061;NFE2L2:-0.938793667331;FOSL2:-0.960423293059;SNAI1..3:-1.00367750465;ZEB1:-1.0853879834;NFE2L1:-1.11734507258;MYOD1:-1.21004992365;PAX8:-1.34498176305;PPARG:-1.36151665768;NR3C1:-1.368621792;ATF5_CREB3:-1.37197328237;FOX{I1,J2}:-1.81103610881
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:486-18I5;search_select_hide=table117:486-18I5
 }}

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FF:486-18I5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:17, 4 June 2020

CNhs11029

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0