FFCP PHASE1:Hg19::chr12:25205221..25205232,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4033 | |EntrezGene=4033 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6690 | |HGNC=6690 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_uc001rgg.1,uc001rgh.2,uc001rgi.2,uc010sja.1,uc010sjb.1,uc010sjc.1,uc010sjd.1_5end | |association_with_transcript=-8bp_to_uc001rgg.1,uc001rgh.2,uc001rgi.2,uc010sja.1,uc010sjb.1,uc010sjc.1,uc010sjd.1_5end | ||
|cluster_id=chr12:25205221..25205232,+ | |||
|coexpression_cluster_id=C3269 | |coexpression_cluster_id=C3269 | ||
|description=CAGE_peak_11_at_LRMP_5end | |description=CAGE_peak_11_at_LRMP_5end | ||
|id=chr12:25205221..25205232,+ | |id=chr12:25205221..25205232,+ | ||
|ontology_enrichment_celltype=CL:0000542;4.19e-08;53 | |ontology_enrichment_celltype=CL:0000838!5.27e-18!52;CL:0000542!1.60e-17!53;CL:0000051!1.60e-17!53;CL:0002031!1.89e-14!124;CL:0000738!3.75e-14!140;CL:0000988!1.83e-13!182;CL:0000037!2.32e-13!172;CL:0000566!2.32e-13!172;CL:0002032!9.24e-13!165;CL:0000837!9.24e-13!165;CL:0002087!1.16e-10!119;CL:0002274!4.84e-10!5;CL:0000457!4.84e-10!5;CL:0002191!4.84e-10!5;CL:0000097!4.84e-10!5;CL:0000831!4.84e-10!5;CL:0002028!4.84e-10!5;CL:0000084!4.19e-09!25;CL:0000827!4.19e-09!25;CL:0000791!2.83e-07!18;CL:0000789!2.83e-07!18;CL:0002420!2.83e-07!18;CL:0002419!2.83e-07!18;CL:0000790!2.83e-07!18;CL:0000945!5.17e-07!24;CL:0000826!5.17e-07!24 | ||
| | |ontology_enrichment_celltype_v019=CL:0000542;4.19e-08;53 | ||
|ontology_enrichment_disease=DOID:0060060;6.72e-26;1!DOID:0060061;6.72e-26;1!DOID:8691;6.72e-26;1!DOID:0060058;5.53e-23;10 | |ontology_enrichment_celltype_v019_2=CL:0000838,4.46e-08,52;CL:0000542,6.24e-08,53;CL:0000051,6.24e-08,53 | ||
|ontology_enrichment_uberon=UBERON:0002370;6.61e-50;2!UBERON:0005058;6.61e-50;2!UBERON:0009113;6.61e-50;2!UBERON:0004177;1.10e-20;5!UBERON:0005057;1.10e-20;5 | |ontology_enrichment_development_v019=CL:0000051;4.19e-08;53 | ||
|ontology_enrichment_disease=DOID:0060058!4.15e-10!10;DOID:2531!1.04e-09!51;DOID:0060083!1.04e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:0060060;6.72e-26;1!DOID:0060061;6.72e-26;1!DOID:8691;6.72e-26;1!DOID:0060058;5.53e-23;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,3.58e-26,1;DOID:0060061,3.58e-26,1;DOID:8691,3.58e-26,1;DOID:0060058,4.10e-23,10;DOID:2531,2.81e-08,51;DOID:0060083,2.81e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0004177!5.45e-10!7;UBERON:0002370!4.12e-09!4;UBERON:0005058!4.12e-09!4;UBERON:0009113!4.12e-09!4;UBERON:0003295!4.12e-09!4;UBERON:0005562!4.12e-09!4;UBERON:0007023!3.01e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.61e-50;2!UBERON:0005058;6.61e-50;2!UBERON:0009113;6.61e-50;2!UBERON:0004177;1.10e-20;5!UBERON:0005057;1.10e-20;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.84e-25,4;UBERON:0005058,1.84e-25,4;UBERON:0009113,1.84e-25,4;UBERON:0003295,1.84e-25,4;UBERON:0005562,1.84e-25,4;UBERON:0003351,2.38e-17,6;UBERON:0004177,5.04e-15,7;UBERON:0005057,5.04e-15,7;UBERON:0000974,8.06e-11,10;UBERON:0003408,8.06e-11,10;UBERON:0001042,8.06e-11,10;UBERON:0009145,8.06e-11,10;UBERON:0006562,6.34e-10,11;UBERON:0009722,6.34e-10,11;UBERON:0007690,6.34e-10,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840547463227464,0.903106483949403,1.18066171970519,0,0,0.154816123316076,0,0,0,1.54934401160603,0.710846162437108,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0.263384084775077,0.393419540227666,0.393010762749165,0.411202997999018,0,0,0,0,0.445641827540694,0,0.221533894583621,0,0,0.260118695119756,0.657751618414705,0,0.289803085735052,0.296573126324121,0.267540828089713,0,0,0.766440987203842,0,0,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09024169590255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.264145302039678,0.829312462163088,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0.985153801009636,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0.540031437238115,0,0,0,0,0,0.432807638929335,2.34768083049767,0.478278818186467,0.59873811429845,0,0.423347165447766,0.324621940274555,0,0,0,0,0,0.642352300414798,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0,0.33307196799782,0,0.18714054040822,0.293016358543788,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0,0,0,0,0,0,0,0.690503839458535,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.846733320657845,0,0,0,0,0,0.2249738915515,0,0.182248669974074,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0,0,0.197611631897944,0.852548188666271,0,0,0,0,0.327872630709804,0,0,0.244052529803926,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,1.9998739585493,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1829261750188,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.253663240775627,0,0,0.496211178389294,0,0,0,0,0,0,0,0.115233987555779,0,0.815636795721981,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0.199882311849858,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,1.16260037704811,1.36564371450887,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840547463227464,0.903106483949403,1.18066171970519,0,0,0.154816123316076,0,0,0,1.54934401160603,0.710846162437108,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0.263384084775077,0.393419540227666,0.393010762749165,0.411202997999018,0,0,0,0,0.445641827540694,0,0.221533894583621,0,0,0.260118695119756,0.657751618414705,0,0.289803085735052,0.296573126324121,0.267540828089713,0,0,0.766440987203842,0,0,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09024169590255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.264145302039678,0.829312462163088,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0.985153801009636,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0.540031437238115,0,0,0,0,0,0.432807638929335,2.34768083049767,0.478278818186467,0.59873811429845,0,0.423347165447766,0.324621940274555,0,0,0,0,0,0.642352300414798,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0,0.33307196799782,0,0.18714054040822,0.293016358543788,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0,0,0,0,0,0,0,0.690503839458535,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.846733320657845,0,0,0,0,0,0.2249738915515,0,0.182248669974074,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0,0,0.197611631897944,0.852548188666271,0,0,0,0,0.327872630709804,0,0,0.244052529803926,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,1.9998739585493,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1829261750188,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.253663240775627,0,0,0.496211178389294,0,0,0,0,0,0,0,0.115233987555779,0,0.815636795721981,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0.199882311849858,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,1.16260037704811,1.36564371450887,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p11@LRMP | |short_description=p11@LRMP | ||
}} | }} |
Latest revision as of 22:22, 17 September 2015
Short description: | p11@LRMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LRMP_5end |
Coexpression cluster: | C3269_Hodgkin_thymus_acute_Burkitt_mycosis_non_B |
Association with transcript: | -8bp_to_uc001rgg.1, uc001rgh.2, uc001rgi.2, uc010sja.1, uc010sjb.1, uc010sjc.1, uc010sjd.1_5end |
EntrezGene: | LRMP |
HGNC: | 6690 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.46e-08 | 52 |
lymphocyte | 6.24e-08 | 53 |
common lymphoid progenitor | 6.24e-08 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.84e-25 | 4 |
hemolymphoid system gland | 1.84e-25 | 4 |
thymic region | 1.84e-25 | 4 |
pharyngeal gland | 1.84e-25 | 4 |
thymus primordium | 1.84e-25 | 4 |
pharyngeal epithelium | 2.38e-17 | 6 |
hemopoietic organ | 5.04e-15 | 7 |
immune organ | 5.04e-15 | 7 |
neck | 8.06e-11 | 10 |
gland of gut | 8.06e-11 | 10 |
chordate pharynx | 8.06e-11 | 10 |
pharyngeal region of foregut | 8.06e-11 | 10 |
pharynx | 6.34e-10 | 11 |
entire pharyngeal arch endoderm | 6.34e-10 | 11 |
early pharyngeal endoderm | 6.34e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.58e-26 | 1 |
cutaneous T cell lymphoma | 3.58e-26 | 1 |
mycosis fungoides | 3.58e-26 | 1 |
lymphoma | 4.10e-23 | 10 |
hematologic cancer | 2.81e-08 | 51 |
immune system cancer | 2.81e-08 | 51 |