FFCP PHASE1:Hg19::chr20:62655886..62655904,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:62655886..62655904,+ | |||
|coexpression_cluster_id=C55 | |coexpression_cluster_id=C55 | ||
|description=CAGE_peak_at_chr20:62655886..62655904,+ | |description=CAGE_peak_at_chr20:62655886..62655904,+ | ||
|id=chr20:62655886..62655904,+ | |id=chr20:62655886..62655904,+ | ||
|ontology_enrichment_celltype=CL:0000182;5.23e-59;12 | |ontology_enrichment_celltype=CL:0000181!8.63e-23!12;CL:0000417!8.63e-23!12;CL:0000668!8.63e-23!12;CL:0000414!8.63e-23!12;CL:0000412!8.63e-23!12;CL:0000182!8.63e-23!12;CL:0000223!2.94e-11!59;CL:0002563!1.99e-08!4 | ||
| | |ontology_enrichment_celltype_v019=CL:0000182;5.23e-59;12 | ||
|ontology_enrichment_disease=DOID:7;2.20e-11;39 | |ontology_enrichment_celltype_v019_2=CL:0000182,5.23e-59,12;CL:0000223,1.35e-12,58 | ||
|ontology_enrichment_uberon=UBERON:0002107;1.68e-53;19!UBERON:0006925;1.68e-53;19!UBERON:0002423;8.53e-41;25!UBERON:0002365;4.83e-32;31!UBERON:0002330;4.83e-32;31!UBERON:0002368;2.52e-26;33!UBERON:0000949;6.74e-21;43!UBERON:0005172;3.80e-12;52!UBERON:0005173;3.80e-12;52!UBERON:0002417;1.47e-11;58!UBERON:0000916;1.47e-11;58!UBERON:0002530;2.44e-11;57 | |ontology_enrichment_development_v019=UBERON:0004161;3.20e-64;11!UBERON:0009497;1.89e-54;13!UBERON:0001041;6.28e-24;30!UBERON:0003104;4.26e-23;31!CL:0000223;1.24e-08;58 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;2.20e-11;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,3.41e-12,39 | |||
|ontology_enrichment_uberon=UBERON:0002107!3.57e-19!19;UBERON:0006925!3.57e-19!19;UBERON:0008836!3.57e-19!19;UBERON:0008835!1.89e-16!22;UBERON:0003894!1.89e-16!22;UBERON:0009854!1.07e-15!23;UBERON:0007499!2.24e-14!25;UBERON:0009497!2.24e-14!25;UBERON:0000015!2.24e-14!25;UBERON:0002423!2.24e-14!25;UBERON:0006235!2.24e-14!25;UBERON:0004161!2.24e-14!25;UBERON:0005057!8.59e-14!26;UBERON:0009856!8.59e-14!26;UBERON:0003929!1.62e-12!54;UBERON:0002365!1.97e-11!31;UBERON:0002330!1.97e-11!31;UBERON:0002368!4.97e-10!35;UBERON:0005418!5.70e-09!1;UBERON:0001389!5.70e-09!1;UBERON:0000026!5.70e-09!1;UBERON:0008784!5.70e-09!1;UBERON:0006058!5.70e-09!1;UBERON:0003663!5.70e-09!1;UBERON:0001383!5.70e-09!1;UBERON:0004256!5.70e-09!1;UBERON:0002529!5.70e-09!1;UBERON:0004708!5.70e-09!1;UBERON:0002101!5.70e-09!1;UBERON:0004709!5.70e-09!1;UBERON:0003661!5.70e-09!1;UBERON:0002471!5.70e-09!1;UBERON:0004357!5.70e-09!1;UBERON:0009872!5.70e-09!1;UBERON:0004347!5.70e-09!1;UBERON:0005420!5.70e-09!1;UBERON:0005732!5.70e-09!1;UBERON:0006057!5.70e-09!1;UBERON:0000978!5.70e-09!1;UBERON:0002103!5.70e-09!1;UBERON:0001665!5.70e-09!1;UBERON:0003823!5.70e-09!1;UBERON:0000154!5.70e-09!1;UBERON:0005733!5.70e-09!1;UBERON:0005730!5.70e-09!1;UBERON:0001242!1.99e-08!4;UBERON:0001262!1.99e-08!4;UBERON:0004786!1.99e-08!4;UBERON:0004808!1.99e-08!4;UBERON:0001277!1.99e-08!4;UBERON:0007190!2.22e-08!1;UBERON:0005911!1.13e-07!82;UBERON:0000949!1.30e-07!45;UBERON:0002530!2.97e-07!59;UBERON:0003350!6.65e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.68e-53;19!UBERON:0006925;1.68e-53;19!UBERON:0002423;8.53e-41;25!UBERON:0002365;4.83e-32;31!UBERON:0002330;4.83e-32;31!UBERON:0002368;2.52e-26;33!UBERON:0000949;6.74e-21;43!UBERON:0005172;3.80e-12;52!UBERON:0005173;3.80e-12;52!UBERON:0002417;1.47e-11;58!UBERON:0000916;1.47e-11;58!UBERON:0002530;2.44e-11;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.61e-53,19;UBERON:0006925,1.61e-53,19;UBERON:0008836,1.61e-53,19;UBERON:0008835,2.66e-46,22;UBERON:0003894,2.66e-46,22;UBERON:0009854,2.60e-44,23;UBERON:0007499,8.24e-41,25;UBERON:0009497,8.24e-41,25;UBERON:0000015,8.24e-41,25;UBERON:0002423,8.24e-41,25;UBERON:0006235,8.24e-41,25;UBERON:0004161,8.24e-41,25;UBERON:0009856,2.92e-39,26;UBERON:0002365,5.21e-33,31;UBERON:0002330,5.21e-33,31;UBERON:0002368,2.73e-29,35;UBERON:0000949,7.09e-23,45;UBERON:0003929,3.99e-19,54;UBERON:0005172,3.99e-19,54;UBERON:0005173,3.99e-19,54;UBERON:0002530,1.56e-17,59;UBERON:0002417,3.02e-17,60;UBERON:0000916,3.02e-17,60;UBERON:0005911,1.07e-12,82;UBERON:0001041,5.57e-12,87;UBERON:0005177,2.38e-10,101;UBERON:0009569,2.37e-09,112;UBERON:0003914,5.86e-09,117;UBERON:0004921,8.24e-09,118;UBERON:0005256,1.35e-08,122;UBERON:0001007,3.33e-07,145;UBERON:0001555,3.33e-07,145;UBERON:0007026,3.33e-07,145;UBERON:0000490,4.16e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,0,0.590789906681404,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.282706142867882,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15471646692177,20.6411937644926,18.9556474276683,19.7492383492762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61207457045891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,0,0.590789906681404,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.282706142867882,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15471646692177,20.6411937644926,18.9556474276683,19.7492383492762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61207457045891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:62655886..62655904,+ | |short_description=p@chr20:62655886..62655904,+ | ||
}} | }} |
Latest revision as of 16:28, 28 July 2015
Short description: | p@chr20:62655886..62655904, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:62655886..62655904, + |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.23e-59 | 12 |
endodermal cell | 1.35e-12 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 1.61e-53 | 19 |
digestive gland | 1.61e-53 | 19 |
liver bud | 1.61e-53 | 19 |
hepatic diverticulum | 2.66e-46 | 22 |
liver primordium | 2.66e-46 | 22 |
digestive tract diverticulum | 2.60e-44 | 23 |
epithelial sac | 8.24e-41 | 25 |
epithelium of foregut-midgut junction | 8.24e-41 | 25 |
anatomical boundary | 8.24e-41 | 25 |
hepatobiliary system | 8.24e-41 | 25 |
foregut-midgut junction | 8.24e-41 | 25 |
septum transversum | 8.24e-41 | 25 |
sac | 2.92e-39 | 26 |
exocrine gland | 5.21e-33 | 31 |
exocrine system | 5.21e-33 | 31 |
endocrine gland | 2.73e-29 | 35 |
endocrine system | 7.09e-23 | 45 |
gut epithelium | 3.99e-19 | 54 |
abdomen element | 3.99e-19 | 54 |
abdominal segment element | 3.99e-19 | 54 |
gland | 1.56e-17 | 59 |
abdominal segment of trunk | 3.02e-17 | 60 |
abdomen | 3.02e-17 | 60 |
endo-epithelium | 1.07e-12 | 82 |
foregut | 5.57e-12 | 87 |
trunk region element | 2.38e-10 | 101 |
subdivision of trunk | 2.37e-09 | 112 |
epithelial tube | 5.86e-09 | 117 |
subdivision of digestive tract | 8.24e-09 | 118 |
trunk mesenchyme | 1.35e-08 | 122 |
digestive system | 3.33e-07 | 145 |
digestive tract | 3.33e-07 | 145 |
primitive gut | 3.33e-07 | 145 |
unilaminar epithelium | 4.16e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 3.41e-12 | 39 |