FFCP PHASE1:Hg19::chr1:94374946..94374994,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2730 | |EntrezGene=2730 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4312 | |HGNC=4312 | ||
|TSSclassifier=strong | |||
|UniProt=P48507 | |UniProt=P48507 | ||
|association_with_transcript=0bp_to_ENST00000370238_5end | |association_with_transcript=0bp_to_ENST00000370238_5end | ||
|cluster_id=chr1:94374946..94374994,- | |||
|coexpression_cluster_id=C1426 | |coexpression_cluster_id=C1426 | ||
|description=CAGE_peak_1_at_GCLM_5end | |description=CAGE_peak_1_at_GCLM_5end | ||
|id=chr1:94374946..94374994,- | |id=chr1:94374946..94374994,- | ||
|ontology_enrichment_celltype=CL:0000548!4.30e-29!679;CL:0000004!4.30e-29!679;CL:0000255!4.30e-29!679;CL:0000012!9.81e-29!682;CL:0000144!2.51e-23!625;CL:0002371!3.09e-22!591;CL:0000003!5.88e-19!722;CL:0000063!2.74e-18!578;CL:0000222!1.13e-13!119;CL:0000220!3.07e-12!246;CL:0000055!5.62e-12!180;CL:0002321!9.04e-12!248;CL:0000057!1.38e-10!75;CL:0000048!4.66e-10!430;CL:0000723!9.62e-10!436;CL:0000066!9.89e-10!254;CL:0000034!1.01e-08!444;CL:0000213!1.06e-07!57;CL:0000215!1.06e-07!57;CL:0002057!3.44e-07!42;CL:0000860!3.94e-07!45;CL:0000076!3.96e-07!62;CL:0000680!8.07e-07!57;CL:0000056!8.07e-07!57;CL:0000355!8.07e-07!57 | |ontology_enrichment_celltype=CL:0000548!4.30e-29!679;CL:0000004!4.30e-29!679;CL:0000255!4.30e-29!679;CL:0000012!9.81e-29!682;CL:0000144!2.51e-23!625;CL:0002371!3.09e-22!591;CL:0000003!5.88e-19!722;CL:0000063!2.74e-18!578;CL:0000222!1.13e-13!119;CL:0000220!3.07e-12!246;CL:0000055!5.62e-12!180;CL:0002321!9.04e-12!248;CL:0000057!1.38e-10!75;CL:0000048!4.66e-10!430;CL:0000723!9.62e-10!436;CL:0000066!9.89e-10!254;CL:0000034!1.01e-08!444;CL:0000213!1.06e-07!57;CL:0000215!1.06e-07!57;CL:0002057!3.44e-07!42;CL:0000860!3.94e-07!45;CL:0000076!3.96e-07!62;CL:0000680!8.07e-07!57;CL:0000056!8.07e-07!57;CL:0000355!8.07e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.33e-14;33!CL:0002057;4.33e-14;33!CL:0000473;4.05e-09;39!CL:0000234;4.05e-09;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,6.80e-14,121;CL:0002321,5.41e-12,250;CL:0000057,1.81e-10,76;CL:0000066,8.08e-10,253;CL:0000048,1.15e-09,427;CL:0000723,2.19e-09,433;CL:0000034,2.19e-08,441;CL:0000213,4.57e-08,58;CL:0000215,4.57e-08,58;CL:0000860,3.40e-07,42;CL:0002057,3.40e-07,42;CL:0000076,3.88e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.50e-16!448;UBERON:0004120!1.50e-16!448;UBERON:0006603!1.50e-16!448;UBERON:0002204!8.80e-11!167;UBERON:0002100!2.22e-10!216;UBERON:0003914!3.49e-10!118;UBERON:0000467!5.74e-10!625;UBERON:0005256!7.65e-10!143;UBERON:0000480!1.13e-09!626;UBERON:0000468!2.02e-09!659;UBERON:0000490!3.41e-09!138;UBERON:0000486!2.59e-08!82;UBERON:0002049!3.73e-08!79;UBERON:0007798!3.73e-08!79;UBERON:0000914!1.99e-07!83;UBERON:0002329!1.99e-07!83;UBERON:0003077!1.99e-07!83;UBERON:0003059!1.99e-07!83;UBERON:0007282!1.99e-07!83;UBERON:0009618!1.99e-07!83;UBERON:0007285!1.99e-07!83;UBERON:0004872!2.09e-07!84;UBERON:0001637!3.31e-07!42;UBERON:0003509!3.31e-07!42;UBERON:0004572!3.31e-07!42;UBERON:0000055!3.72e-07!69;UBERON:0001981!4.97e-07!60;UBERON:0007500!4.97e-07!60;UBERON:0004537!4.97e-07!60;UBERON:0006965!4.97e-07!60;UBERON:0004535!9.82e-07!110 | |ontology_enrichment_uberon=UBERON:0000926!1.50e-16!448;UBERON:0004120!1.50e-16!448;UBERON:0006603!1.50e-16!448;UBERON:0002204!8.80e-11!167;UBERON:0002100!2.22e-10!216;UBERON:0003914!3.49e-10!118;UBERON:0000467!5.74e-10!625;UBERON:0005256!7.65e-10!143;UBERON:0000480!1.13e-09!626;UBERON:0000468!2.02e-09!659;UBERON:0000490!3.41e-09!138;UBERON:0000486!2.59e-08!82;UBERON:0002049!3.73e-08!79;UBERON:0007798!3.73e-08!79;UBERON:0000914!1.99e-07!83;UBERON:0002329!1.99e-07!83;UBERON:0003077!1.99e-07!83;UBERON:0003059!1.99e-07!83;UBERON:0007282!1.99e-07!83;UBERON:0009618!1.99e-07!83;UBERON:0007285!1.99e-07!83;UBERON:0004872!2.09e-07!84;UBERON:0001637!3.31e-07!42;UBERON:0003509!3.31e-07!42;UBERON:0004572!3.31e-07!42;UBERON:0000055!3.72e-07!69;UBERON:0001981!4.97e-07!60;UBERON:0007500!4.97e-07!60;UBERON:0004537!4.97e-07!60;UBERON:0006965!4.97e-07!60;UBERON:0004535!9.82e-07!110 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,9.32e-12,315;UBERON:0004120,9.32e-12,315;UBERON:0006603,9.32e-12,315;UBERON:0002204,5.47e-11,167;UBERON:0003914,2.58e-10,117;UBERON:0000490,1.18e-09,148;UBERON:0002100,1.69e-09,199;UBERON:0002049,3.00e-08,78;UBERON:0007798,3.00e-08,78;UBERON:0000486,3.53e-08,83;UBERON:0005256,1.12e-07,122;UBERON:0004872,1.64e-07,83;UBERON:0000055,3.02e-07,68;UBERON:0001637,3.29e-07,42;UBERON:0003509,3.29e-07,42;UBERON:0004572,3.29e-07,42;UBERON:0007500,3.91e-07,59;UBERON:0001981,3.91e-07,59;UBERON:0004537,3.91e-07,59;UBERON:0006965,3.91e-07,59;UBERON:0004535,8.65e-07,109;UBERON:0003104,9.27e-07,160;UBERON:0009142,9.27e-07,160 | |||
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| ||
|short_description=p1@GCLM | |short_description=p1@GCLM | ||
}} | }} |
Latest revision as of 22:24, 19 September 2015
Short description: | p1@GCLM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCLM_5end |
Coexpression cluster: | C1426_CD14_bile_mucinous_lung_large_glioblastoma_nonsmall |
Association with transcript: | 0bp_to_ENST00000370238_5end |
EntrezGene: | GCLM |
HGNC: | 4312 |
UniProt: | P48507 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 6.80e-14 | 121 |
embryonic cell | 5.41e-12 | 250 |
fibroblast | 1.81e-10 | 76 |
epithelial cell | 8.08e-10 | 253 |
multi fate stem cell | 1.15e-09 | 427 |
somatic stem cell | 2.19e-09 | 433 |
stem cell | 2.19e-08 | 441 |
lining cell | 4.57e-08 | 58 |
barrier cell | 4.57e-08 | 58 |
classical monocyte | 3.40e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.40e-07 | 42 |
squamous epithelial cell | 3.88e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 9.32e-12 | 315 |
mesoderm-derived structure | 9.32e-12 | 315 |
presumptive mesoderm | 9.32e-12 | 315 |
musculoskeletal system | 5.47e-11 | 167 |
epithelial tube | 2.58e-10 | 117 |
unilaminar epithelium | 1.18e-09 | 148 |
trunk | 1.69e-09 | 199 |
vasculature | 3.00e-08 | 78 |
vascular system | 3.00e-08 | 78 |
multilaminar epithelium | 3.53e-08 | 83 |
trunk mesenchyme | 1.12e-07 | 122 |
splanchnic layer of lateral plate mesoderm | 1.64e-07 | 83 |
vessel | 3.02e-07 | 68 |
artery | 3.29e-07 | 42 |
arterial blood vessel | 3.29e-07 | 42 |
arterial system | 3.29e-07 | 42 |
epithelial tube open at both ends | 3.91e-07 | 59 |
blood vessel | 3.91e-07 | 59 |
blood vasculature | 3.91e-07 | 59 |
vascular cord | 3.91e-07 | 59 |
cardiovascular system | 8.65e-07 | 109 |
mesenchyme | 9.27e-07 | 160 |
entire embryonic mesenchyme | 9.27e-07 | 160 |