FFCP PHASE1:Hg19::chr1:40782879..40782904,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1298 | |EntrezGene=1298 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2218 | |HGNC=2218 | ||
|TSSclassifier=strong | |||
|UniProt=B1AKJ3,Q14055 | |UniProt=B1AKJ3,Q14055 | ||
|association_with_transcript=34bp_to_ENST00000372736,NM_001852_5end | |association_with_transcript=34bp_to_ENST00000372736,NM_001852_5end | ||
|cluster_id=chr1:40782879..40782904,- | |||
|description=CAGE_peak_7_at_COL9A2_5end | |description=CAGE_peak_7_at_COL9A2_5end | ||
|id=chr1:40782879..40782904,- | |id=chr1:40782879..40782904,- | ||
|ontology_enrichment_celltype=CL:0000128!3.40e-07!7;CL:0000126!3.40e-07!7;CL:0000127!3.40e-07!7;CL:0002453!3.40e-07!7 | |ontology_enrichment_celltype=CL:0000128!3.40e-07!7;CL:0000126!3.40e-07!7;CL:0000127!3.40e-07!7;CL:0002453!3.40e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000128;4.37e-15;7!CL:0000126;4.37e-15;7!CL:0000127;4.37e-15;7!CL:0000047;9.75e-14;2!CL:0002319;5.87e-11;25!CL:0002603;8.14e-10;3!CL:0000064;1.04e-09;3!CL:0000067;1.04e-09;3!CL:0005012;1.04e-09;3!CL:0002304;1.04e-09;3!CL:0002605;1.86e-09;3!CL:0000095;1.91e-08;17!CL:1001319;4.20e-08;1!CL:1000600;4.20e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,2.34e-15,7;CL:0000126,2.34e-15,7;CL:0000127,2.34e-15,7;CL:0002453,2.34e-15,7;CL:0002319,5.23e-11,25;CL:0002603,6.55e-10,3;CL:0000064,8.52e-10,3;CL:0000067,8.52e-10,3;CL:0005012,8.52e-10,3;CL:0002304,8.52e-10,3;CL:0002605,1.11e-09,3;CL:0000095,1.46e-08,17;CL:0000123,1.46e-08,17;CL:1001319,4.07e-08,1;CL:1000600,4.07e-08,1;CL:0000133,3.07e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0005754;1.04e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.36e-33!86;UBERON:0001049!3.92e-32!57;UBERON:0005068!3.92e-32!57;UBERON:0006241!3.92e-32!57;UBERON:0007135!3.92e-32!57;UBERON:0003075!3.71e-31!86;UBERON:0007284!3.71e-31!86;UBERON:0000073!1.48e-30!94;UBERON:0001016!1.48e-30!94;UBERON:0002346!3.46e-30!90;UBERON:0001017!1.86e-29!82;UBERON:0002616!1.54e-28!59;UBERON:0000033!6.59e-25!123;UBERON:0003056!1.19e-24!61;UBERON:0000153!1.22e-24!129;UBERON:0007811!1.22e-24!129;UBERON:0000955!1.39e-24!69;UBERON:0006238!1.39e-24!69;UBERON:0004121!2.75e-24!169;UBERON:0000924!5.10e-24!173;UBERON:0006601!5.10e-24!173;UBERON:0003080!1.82e-21!42;UBERON:0002780!1.65e-20!41;UBERON:0001890!1.65e-20!41;UBERON:0006240!1.65e-20!41;UBERON:0001893!1.08e-19!34;UBERON:0002020!1.54e-19!34;UBERON:0003528!1.54e-19!34;UBERON:0002791!1.03e-18!33;UBERON:0001869!1.17e-17!32;UBERON:0007023!2.31e-17!115;UBERON:0000956!4.46e-15!25;UBERON:0000203!4.46e-15!25;UBERON:0002619!5.41e-12!22;UBERON:0001950!5.52e-12!20;UBERON:0003076!5.90e-12!15;UBERON:0003057!5.90e-12!15;UBERON:0000064!9.18e-12!219;UBERON:0000475!4.67e-11!365;UBERON:0004733!4.81e-11!12;UBERON:0002028!4.81e-11!12;UBERON:0007277!4.81e-11!12;UBERON:0004732!6.07e-10!13;UBERON:0002298!7.99e-10!8;UBERON:0000481!4.02e-09!347;UBERON:0000477!5.76e-09!286;UBERON:0000483!1.16e-08!309;UBERON:0000025!2.13e-08!194;UBERON:0000119!2.32e-08!312;UBERON:0004111!2.79e-08!241;UBERON:0002680!4.48e-08!9;UBERON:0001895!4.48e-08!9;UBERON:0010092!4.48e-08!9 | |ontology_enrichment_uberon=UBERON:0005743!2.36e-33!86;UBERON:0001049!3.92e-32!57;UBERON:0005068!3.92e-32!57;UBERON:0006241!3.92e-32!57;UBERON:0007135!3.92e-32!57;UBERON:0003075!3.71e-31!86;UBERON:0007284!3.71e-31!86;UBERON:0000073!1.48e-30!94;UBERON:0001016!1.48e-30!94;UBERON:0002346!3.46e-30!90;UBERON:0001017!1.86e-29!82;UBERON:0002616!1.54e-28!59;UBERON:0000033!6.59e-25!123;UBERON:0003056!1.19e-24!61;UBERON:0000153!1.22e-24!129;UBERON:0007811!1.22e-24!129;UBERON:0000955!1.39e-24!69;UBERON:0006238!1.39e-24!69;UBERON:0004121!2.75e-24!169;UBERON:0000924!5.10e-24!173;UBERON:0006601!5.10e-24!173;UBERON:0003080!1.82e-21!42;UBERON:0002780!1.65e-20!41;UBERON:0001890!1.65e-20!41;UBERON:0006240!1.65e-20!41;UBERON:0001893!1.08e-19!34;UBERON:0002020!1.54e-19!34;UBERON:0003528!1.54e-19!34;UBERON:0002791!1.03e-18!33;UBERON:0001869!1.17e-17!32;UBERON:0007023!2.31e-17!115;UBERON:0000956!4.46e-15!25;UBERON:0000203!4.46e-15!25;UBERON:0002619!5.41e-12!22;UBERON:0001950!5.52e-12!20;UBERON:0003076!5.90e-12!15;UBERON:0003057!5.90e-12!15;UBERON:0000064!9.18e-12!219;UBERON:0000475!4.67e-11!365;UBERON:0004733!4.81e-11!12;UBERON:0002028!4.81e-11!12;UBERON:0007277!4.81e-11!12;UBERON:0004732!6.07e-10!13;UBERON:0002298!7.99e-10!8;UBERON:0000481!4.02e-09!347;UBERON:0000477!5.76e-09!286;UBERON:0000483!1.16e-08!309;UBERON:0000025!2.13e-08!194;UBERON:0000119!2.32e-08!312;UBERON:0004111!2.79e-08!241;UBERON:0002680!4.48e-08!9;UBERON:0001895!4.48e-08!9;UBERON:0010092!4.48e-08!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.04e-09;3!UBERON:0001775;1.04e-09;3!UBERON:0004645;4.20e-08;1!UBERON:0001256;4.20e-08;1!UBERON:0001259;4.20e-08;1!UBERON:0000970;6.92e-08;20!UBERON:0002336;1.04e-07;1!UBERON:0000998;1.04e-07;1!UBERON:0006868;1.04e-07;1!UBERON:0011215;1.04e-07;1!UBERON:0001018;1.04e-07;1!UBERON:0002473;1.04e-07;1!UBERON:0005340;1.04e-07;1!UBERON:0003544;1.04e-07;1!UBERON:0005970;1.04e-07;1!UBERON:0002316;1.04e-07;1!UBERON:0001020;1.04e-07;1!UBERON:0002437;1.04e-07;1!UBERON:0002104;1.69e-07;21!UBERON:0000488;1.72e-07;4!UBERON:0000020;7.94e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,8.52e-10,3;UBERON:0001775,8.52e-10,3;UBERON:0004645,4.07e-08,1;UBERON:0001256,4.07e-08,1;UBERON:0001259,4.07e-08,1;UBERON:0002336,1.11e-07,1;UBERON:0011215,1.11e-07,1;UBERON:0001018,1.11e-07,1;UBERON:0002473,1.11e-07,1;UBERON:0005340,1.11e-07,1;UBERON:0003544,1.11e-07,1;UBERON:0005970,1.11e-07,1;UBERON:0002316,1.11e-07,1;UBERON:0001020,1.11e-07,1;UBERON:0002437,1.11e-07,1;UBERON:0000998,1.18e-07,1;UBERON:0006868,1.18e-07,1;UBERON:0000488,1.49e-07,4;UBERON:0000970,1.63e-07,21;UBERON:0002104,1.63e-07,21;UBERON:0003075,1.75e-07,82;UBERON:0007284,1.75e-07,82;UBERON:0002346,4.73e-07,86 | |||
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|short_description=p7@COL9A2 | |short_description=p7@COL9A2 | ||
}} | }} |
Latest revision as of 01:08, 18 September 2015
Short description: | p7@COL9A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL9A2_5end |
Coexpression cluster: | NA |
Association with transcript: | 34bp_to_ENST00000372736, NM_001852_5end |
EntrezGene: | COL9A2 |
HGNC: | 2218 |
UniProt: | B1AKJ3Q14055 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 2.34e-15 | 7 |
macroglial cell | 2.34e-15 | 7 |
astrocyte | 2.34e-15 | 7 |
oligodendrocyte precursor cell | 2.34e-15 | 7 |
neural cell | 5.23e-11 | 25 |
astrocyte of the cerebellum | 6.55e-10 | 3 |
ciliated cell | 8.52e-10 | 3 |
ciliated epithelial cell | 8.52e-10 | 3 |
multi-ciliated epithelial cell | 8.52e-10 | 3 |
non-pigmented ciliary epithelial cell | 8.52e-10 | 3 |
astrocyte of the cerebral cortex | 1.11e-09 | 3 |
neuron associated cell | 1.46e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 1.46e-08 | 17 |
bladder cell | 4.07e-08 | 1 |
lower urinary tract cell | 4.07e-08 | 1 |
neurectodermal cell | 3.07e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 8.52e-10 | 3 |
ciliary body | 8.52e-10 | 3 |
urinary bladder urothelium | 4.07e-08 | 1 |
wall of urinary bladder | 4.07e-08 | 1 |
mucosa of urinary bladder | 4.07e-08 | 1 |
corpus callosum | 1.11e-07 | 1 |
central nervous system cell part cluster | 1.11e-07 | 1 |
axon tract | 1.11e-07 | 1 |
intercerebral commissure | 1.11e-07 | 1 |
dorsal telencephalic commissure | 1.11e-07 | 1 |
brain white matter | 1.11e-07 | 1 |
brain commissure | 1.11e-07 | 1 |
white matter | 1.11e-07 | 1 |
nervous system commissure | 1.11e-07 | 1 |
cerebral hemisphere white matter | 1.11e-07 | 1 |
seminal vesicle | 1.18e-07 | 1 |
seminal fluid secreting gland | 1.18e-07 | 1 |
atypical epithelium | 1.49e-07 | 4 |
eye | 1.63e-07 | 21 |
visual system | 1.63e-07 | 21 |
neural plate | 1.75e-07 | 82 |
presumptive neural plate | 1.75e-07 | 82 |
neurectoderm | 4.73e-07 | 86 |