FFCP PHASE1:Hg19::chr1:183212542..183212560,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:183212542..183212560,+
|short_description=p13@LAMC2
|description=CAGE_peak_13_at_LAMC2_5end
|association_with_transcript=-8bp_to_ENST00000476255_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000476255_5end | |||
|cluster_id=chr1:183212542..183212560,+ | |||
|description=CAGE_peak_13_at_LAMC2_5end | |||
|id=chr1:183212542..183212560,+ | |||
|ontology_enrichment_celltype=CL:0002076!7.00e-31!43;CL:0000066!3.50e-25!254;CL:0002368!6.28e-23!13;CL:0000223!4.20e-21!59;CL:0002251!3.84e-13!21;CL:0002621!7.82e-13!3;CL:0000622!1.55e-12!5;CL:0000154!1.88e-10!6;CL:0002202!2.21e-10!9;CL:0002632!2.21e-10!9;CL:0000150!2.80e-10!9;CL:0000220!2.85e-10!246;CL:0002159!3.13e-10!13;CL:0002321!4.00e-10!248;CL:0000317!8.42e-09!2;CL:1000448!8.42e-09!2;CL:0002308!8.42e-09!2;CL:0002140!8.42e-09!2;CL:0002536!4.70e-08!2;CL:0000362!7.95e-08!8;CL:0000063!9.93e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.62e-29;13!CL:0002621;1.23e-21;3!CL:0002166;4.45e-21;3!CL:0002076;1.42e-18;42!CL:0000244;3.07e-16;4!CL:0000731;3.07e-16;4!CL:0002159;2.46e-10;14!CL:0000317;6.93e-09;2!CL:1000448;6.93e-09;2!CL:0002308;6.93e-09;2!CL:0002140;6.93e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.88e-29,13;CL:0002621,1.29e-21,3;CL:0002166,3.28e-21,3;CL:0002076,1.69e-17,42;CL:0000244,3.07e-16,4;CL:0000731,3.07e-16,4;CL:0000223,1.47e-12,58;CL:0002159,2.46e-10,14;CL:0000066,4.34e-09,253;CL:0000317,8.74e-09,2;CL:1000448,8.74e-09,2;CL:0002308,8.74e-09,2;CL:0002140,8.74e-09,2;CL:0002077,2.00e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;5.79e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!7.82e-13!3;UBERON:0002419!8.42e-09!2;UBERON:0007771!8.42e-09!2;UBERON:0003297!8.42e-09!2;UBERON:0001821!8.42e-09!2;UBERON:0003487!8.42e-09!2;UBERON:0001820!8.42e-09!2;UBERON:0005089!8.42e-09!2;UBERON:0005088!8.42e-09!2;UBERON:0004119!1.03e-08!169;UBERON:0000925!1.03e-08!169;UBERON:0006595!1.03e-08!169;UBERON:0001004!1.18e-08!72;UBERON:0000161!3.41e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.23e-21;3!UBERON:0000486;8.33e-21;12!UBERON:0001708;4.51e-16;4!UBERON:0008895;4.51e-16;4!UBERON:0000365;3.43e-13;5!UBERON:0011159;4.66e-13;5!UBERON:0005910;3.75e-11;6!UBERON:0003929;7.81e-10;7!UBERON:0002419;6.93e-09;2!UBERON:0007771;6.93e-09;2!UBERON:0003297;6.93e-09;2!UBERON:0001821;6.93e-09;2!UBERON:0003487;6.93e-09;2!UBERON:0001820;6.93e-09;2!UBERON:0003350;1.02e-08;8!UBERON:0001828;1.02e-08;8!UBERON:0005911;8.78e-08;36!UBERON:0000065;3.69e-07;44!UBERON:0004807;6.96e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.29e-21,3;UBERON:0001708,3.59e-16,4;UBERON:0008895,3.59e-16,4;UBERON:0000365,3.43e-13,5;UBERON:0011159,3.88e-13,5;UBERON:0005910,3.75e-11,6;UBERON:0010188,4.16e-11,6;UBERON:0002539,4.16e-11,6;UBERON:0008816,4.16e-11,6;UBERON:0001004,9.65e-10,74;UBERON:0002419,8.74e-09,2;UBERON:0007771,8.74e-09,2;UBERON:0003297,8.74e-09,2;UBERON:0001821,8.74e-09,2;UBERON:0003487,8.74e-09,2;UBERON:0001820,8.74e-09,2;UBERON:0005089,8.74e-09,2;UBERON:0005088,8.74e-09,2;UBERON:0003350,1.04e-08,8;UBERON:0001828,1.04e-08,8;UBERON:0000065,4.08e-07,54;UBERON:0004119,6.74e-07,160;UBERON:0000925,6.74e-07,160;UBERON:0006595,6.74e-07,160 | |||
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| ||
|short_description=p13@LAMC2 | |||
}} | }} |
Latest revision as of 02:35, 19 September 2015
Short description: | p13@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_LAMC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000476255_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.88e-29 | 13 |
gingival epithelial cell | 1.29e-21 | 3 |
epithelial cell of Malassez | 3.28e-21 | 3 |
endo-epithelial cell | 1.69e-17 | 42 |
transitional epithelial cell | 3.07e-16 | 4 |
urothelial cell | 3.07e-16 | 4 |
endodermal cell | 1.47e-12 | 58 |
general ecto-epithelial cell | 2.46e-10 | 14 |
epithelial cell | 4.34e-09 | 253 |
sebum secreting cell | 8.74e-09 | 2 |
epithelial cell of sweat gland | 8.74e-09 | 2 |
epithelial cell of skin gland | 8.74e-09 | 2 |
acinar cell of sebaceous gland | 8.74e-09 | 2 |
ecto-epithelial cell | 2.00e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.29e-21 | 3 |
jaw skeleton | 3.59e-16 | 4 |
splanchnocranium | 3.59e-16 | 4 |
urothelium | 3.43e-13 | 5 |
primary subdivision of cranial skeletal system | 3.88e-13 | 5 |
transitional epithelium | 3.75e-11 | 6 |
protuberance | 4.16e-11 | 6 |
pharyngeal arch | 4.16e-11 | 6 |
embryonic head | 4.16e-11 | 6 |
respiratory system | 9.65e-10 | 74 |
skin gland | 8.74e-09 | 2 |
epidermis gland | 8.74e-09 | 2 |
gland of integumental system | 8.74e-09 | 2 |
sebaceous gland | 8.74e-09 | 2 |
skin sebaceous gland | 8.74e-09 | 2 |
sweat gland | 8.74e-09 | 2 |
sweat gland placode | 8.74e-09 | 2 |
sebaceous gland placode | 8.74e-09 | 2 |
epithelium of mucosa | 1.04e-08 | 8 |
gingiva | 1.04e-08 | 8 |
respiratory tract | 4.08e-07 | 54 |
endoderm-derived structure | 6.74e-07 | 160 |
endoderm | 6.74e-07 | 160 |
presumptive endoderm | 6.74e-07 | 160 |