FFCP PHASE1:Hg19::chr1:197886617..197886628,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:197886617..197886628,+
|short_description=p8@LHX9
|description=CAGE_peak_8_at_LHX9_5end
|association_with_transcript=88bp_to_ENST00000367387_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56956 | |EntrezGene=56956 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |HGNC=14222 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ69 | |UniProt=Q9NQ69 | ||
|association_with_transcript=88bp_to_ENST00000367387_5end | |||
|cluster_id=chr1:197886617..197886628,+ | |||
|coexpression_cluster_id=C2547 | |||
|description=CAGE_peak_8_at_LHX9_5end | |||
|id=chr1:197886617..197886628,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.34e-32!23;CL:0000057!2.50e-08!75;CL:0000511!3.13e-07!1;CL:0002625!3.13e-07!1;CL:0000216!3.13e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.09e-28;23!CL:0000511;1.08e-19;1!CL:0002625;1.08e-19;1!CL:0000216;1.08e-19;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.17e-28,23;CL:0000511,1.08e-19,1;CL:0002625,1.08e-19,1;CL:0000216,1.08e-19,1;CL:0000057,2.09e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.37e-18!5;DOID:450!1.37e-18!5;DOID:66!1.37e-18!5;DOID:423!1.37e-18!5;DOID:0080000!1.37e-18!5;DOID:11722!1.37e-18!5;DOID:3371!2.95e-07!1;DOID:4549!2.95e-07!1;DOID:5861!2.95e-07!1;DOID:6496!2.95e-07!1;DOID:2513!8.27e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:17;5.35e-33;5!DOID:450;5.35e-33;5!DOID:66;5.35e-33;5!DOID:423;5.35e-33;5!DOID:0080000;5.35e-33;5!DOID:11722;5.35e-33;5!DOID:3371;8.94e-20;1!DOID:4549;8.94e-20;1!DOID:5861;8.94e-20;1!DOID:6496;8.94e-20;1 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.67e-33,5;DOID:450,6.67e-33,5;DOID:66,6.67e-33,5;DOID:423,6.67e-33,5;DOID:0080000,6.67e-33,5;DOID:11722,6.67e-33,5;DOID:3371,8.95e-20,1;DOID:4549,8.95e-20,1;DOID:5861,8.95e-20,1;DOID:6496,8.95e-20,1 | |||
|ontology_enrichment_uberon=UBERON:0002097!7.17e-21!40;UBERON:0002199!2.99e-18!45;UBERON:0002416!2.99e-18!45;UBERON:0003102!2.93e-07!95;UBERON:0001136!3.13e-07!1;UBERON:0001343!3.13e-07!1;UBERON:0004910!3.13e-07!1;UBERON:0005154!3.13e-07!1;UBERON:0005295!3.13e-07!1;UBERON:0004813!3.13e-07!1;UBERON:0005297!3.13e-07!1;UBERON:0005294!3.13e-07!1;UBERON:0010141!3.13e-07!1;UBERON:0005891!3.13e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;1.08e-19;1!UBERON:0001343;1.08e-19;1!UBERON:0004910;1.08e-19;1!UBERON:0004813;1.08e-19;1!UBERON:0002097;1.71e-12;41!UBERON:0004909;1.57e-10;2!UBERON:0000473;4.73e-10;8!UBERON:0002199;6.83e-08;46!UBERON:0002416;6.83e-08;46!UBERON:0003102;7.54e-08;50!UBERON:0003135;1.49e-07;11!UBERON:0002418;1.82e-07;3!UBERON:0004755;1.82e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.08e-19,1;UBERON:0001343,1.08e-19,1;UBERON:0004910,1.08e-19,1;UBERON:0005154,1.08e-19,1;UBERON:0005295,1.08e-19,1;UBERON:0004813,1.08e-19,1;UBERON:0005297,1.08e-19,1;UBERON:0005294,1.08e-19,1;UBERON:0010141,1.08e-19,1;UBERON:0005891,1.08e-19,1;UBERON:0002097,1.05e-15,41;UBERON:0002199,5.45e-14,46;UBERON:0002416,5.45e-14,46;UBERON:0004909,1.57e-10,2;UBERON:0000473,5.29e-10,8;UBERON:0003135,1.62e-07,11;UBERON:0002418,1.82e-07,3;UBERON:0004755,1.82e-07,3 | |||
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|short_description=p8@LHX9 | |||
}} | }} |
Latest revision as of 13:27, 19 September 2015
Short description: | p8@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LHX9_5end |
Coexpression cluster: | C2547_extraskeletal_Fibroblast_glioblastoma_Sertoli_mesothelioma_hepatoma_neuroepithelioma |
Association with transcript: | 88bp_to_ENST00000367387_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | Q9NQ69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.17e-28 | 23 |
androgen binding protein secreting cell | 1.08e-19 | 1 |
seminiferous tubule epithelial cell | 1.08e-19 | 1 |
Sertoli cell | 1.08e-19 | 1 |
fibroblast | 2.09e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.08e-19 | 1 |
seminiferous tubule of testis | 1.08e-19 | 1 |
epithelium of male gonad | 1.08e-19 | 1 |
epithelial cord | 1.08e-19 | 1 |
sex cord | 1.08e-19 | 1 |
seminiferous tubule epithelium | 1.08e-19 | 1 |
testis sex cord | 1.08e-19 | 1 |
genital ridge | 1.08e-19 | 1 |
primitive sex cord of indifferent gonad | 1.08e-19 | 1 |
coelomic epithelium | 1.08e-19 | 1 |
skin of body | 1.05e-15 | 41 |
integument | 5.45e-14 | 46 |
integumental system | 5.45e-14 | 46 |
epithelium of gonad | 1.57e-10 | 2 |
testis | 5.29e-10 | 8 |
male reproductive organ | 1.62e-07 | 11 |
cartilage tissue | 1.82e-07 | 3 |
skeletal tissue | 1.82e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.67e-33 | 5 |
myotonic disease | 6.67e-33 | 5 |
muscle tissue disease | 6.67e-33 | 5 |
myopathy | 6.67e-33 | 5 |
muscular disease | 6.67e-33 | 5 |
myotonic dystrophy | 6.67e-33 | 5 |
chondrosarcoma | 8.95e-20 | 1 |
extraosseous chondrosarcoma | 8.95e-20 | 1 |
myxoid chondrosarcoma | 8.95e-20 | 1 |
extraskeletal myxoid chondrosarcoma | 8.95e-20 | 1 |