FFCP PHASE1:Hg19::chr1:207669613..207669634,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:207669613..207669634,+
|short_description=p3@CR1
|description=CAGE_peak_3_at_CR1_5end
|association_with_transcript=30bp_to_ENST00000530487_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1378 | |EntrezGene=1378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2334 | |HGNC=2334 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=30bp_to_ENST00000530487_5end | |||
|cluster_id=chr1:207669613..207669634,+ | |||
|coexpression_cluster_id=C802 | |||
|description=CAGE_peak_3_at_CR1_5end | |||
|id=chr1:207669613..207669634,+ | |||
|ontology_enrichment_celltype=CL:0000766!9.03e-40!76;CL:0002057!6.08e-36!42;CL:0000037!3.93e-35!172;CL:0000566!3.93e-35!172;CL:0000763!5.26e-35!112;CL:0000049!5.26e-35!112;CL:0002194!1.18e-34!63;CL:0000576!1.18e-34!63;CL:0000040!1.18e-34!63;CL:0000559!1.18e-34!63;CL:0000738!4.91e-34!140;CL:0002032!6.14e-34!165;CL:0000837!6.14e-34!165;CL:0000839!1.17e-33!70;CL:0002009!3.50e-33!65;CL:0000860!8.63e-33!45;CL:0000988!5.76e-32!182;CL:0002087!6.79e-32!119;CL:0000557!2.88e-29!71;CL:0002031!4.96e-29!124;CL:0002393!8.86e-14!9;CL:0002397!8.86e-14!9;CL:0000094!5.98e-11!8;CL:0000081!1.52e-07!11;CL:0000134!6.88e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000094;2.28e-22;8!CL:0000775;3.04e-16;3!CL:0000081;4.13e-16;11!CL:0002393;3.50e-13;6!CL:0002397;3.50e-13;6!CL:0000764;1.99e-10;2!CL:0000558;1.99e-10;2!CL:0000766;7.27e-08;69!CL:0000763;1.23e-07;100!CL:0000767;1.51e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000094,2.65e-22,8;CL:0000763,1.35e-18,108;CL:0000049,1.35e-18,108;CL:0000775,2.97e-16,3;CL:0000081,4.61e-16,11;CL:0000766,1.16e-13,72;CL:0002032,2.90e-13,161;CL:0000837,2.90e-13,161;CL:0000037,1.74e-12,168;CL:0000988,1.41e-11,177;CL:0000764,2.20e-10,2;CL:0000765,2.20e-10,2;CL:0000050,2.20e-10,2;CL:0000038,2.20e-10,2;CL:0000558,2.20e-10,2;CL:0000547,2.20e-10,2;CL:0000549,2.20e-10,2;CL:0000550,2.20e-10,2;CL:0000552,2.20e-10,2;CL:0002393,1.00e-08,9;CL:0002397,1.00e-08,9;CL:0000473,2.87e-08,48;CL:0000234,2.87e-08,48;CL:0000839,6.05e-08,66;CL:0000860,8.12e-08,42;CL:0002057,8.12e-08,42;CL:0000738,1.47e-07,136;CL:0000767,1.87e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000049;4.69e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.50e-39!102;UBERON:0003061!1.50e-39!102;UBERON:0002193!1.17e-37!112;UBERON:0002371!1.64e-24!80;UBERON:0001474!6.56e-22!86;UBERON:0002405!1.86e-20!115;UBERON:0004765!8.36e-17!101;UBERON:0001434!8.36e-17!101;UBERON:0000178!3.24e-15!15;UBERON:0000179!3.24e-15!15;UBERON:0000463!3.24e-15!15;UBERON:0003081!1.91e-14!216;UBERON:0007023!1.61e-08!115;UBERON:0002204!2.13e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.92e-26;15!UBERON:0000179;1.92e-26;15!UBERON:0000463;1.92e-26;15!UBERON:0002390;7.29e-16;32!UBERON:0002193;3.30e-10;42!UBERON:0002106;2.03e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.33e-26,15;UBERON:0000179,1.33e-26,15;UBERON:0000463,1.33e-26,15;UBERON:0002390,2.10e-17,98;UBERON:0003061,2.10e-17,98;UBERON:0002193,4.11e-17,108;UBERON:0007023,1.05e-07,114;UBERON:0002106,1.93e-07,3;UBERON:0004854,1.93e-07,3;UBERON:0009034,1.93e-07,3;UBERON:0002095,1.93e-07,3;UBERON:0004782,1.93e-07,3;UBERON:0003281,1.93e-07,3;UBERON:0009664,1.93e-07,3;UBERON:0002296,1.93e-07,3;UBERON:0005602,1.93e-07,3;UBERON:0001179,1.93e-07,3;UBERON:0006293,1.93e-07,3;UBERON:0003081,7.08e-07,203 | |||
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| ||
|short_description=p3@CR1 | |||
}} | }} |
Latest revision as of 08:53, 20 September 2015
Short description: | p3@CR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CR1_5end |
Coexpression cluster: | C802_acute_Whole_chronic_blood_leukemia_Neutrophils_CD34 |
Association with transcript: | 30bp_to_ENST00000530487_5end |
EntrezGene: | CR1 |
HGNC: | 2334 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 2.65e-22 | 8 |
myeloid cell | 1.35e-18 | 108 |
common myeloid progenitor | 1.35e-18 | 108 |
neutrophil | 2.97e-16 | 3 |
blood cell | 4.61e-16 | 11 |
myeloid leukocyte | 1.16e-13 | 72 |
hematopoietic oligopotent progenitor cell | 2.90e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.90e-13 | 161 |
hematopoietic stem cell | 1.74e-12 | 168 |
hematopoietic cell | 1.41e-11 | 177 |
erythroid lineage cell | 2.20e-10 | 2 |
erythroblast | 2.20e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 2.20e-10 | 2 |
erythroid progenitor cell | 2.20e-10 | 2 |
reticulocyte | 2.20e-10 | 2 |
proerythroblast | 2.20e-10 | 2 |
basophilic erythroblast | 2.20e-10 | 2 |
polychromatophilic erythroblast | 2.20e-10 | 2 |
orthochromatic erythroblast | 2.20e-10 | 2 |
intermediate monocyte | 1.00e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.00e-08 | 9 |
defensive cell | 2.87e-08 | 48 |
phagocyte | 2.87e-08 | 48 |
myeloid lineage restricted progenitor cell | 6.05e-08 | 66 |
classical monocyte | 8.12e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.12e-08 | 42 |
leukocyte | 1.47e-07 | 136 |
basophil | 1.87e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.33e-26 | 15 |
haemolymphatic fluid | 1.33e-26 | 15 |
organism substance | 1.33e-26 | 15 |
hematopoietic system | 2.10e-17 | 98 |
blood island | 2.10e-17 | 98 |
hemolymphoid system | 4.11e-17 | 108 |
adult organism | 1.05e-07 | 114 |
spleen | 1.93e-07 | 3 |
gastrointestinal system mesentery | 1.93e-07 | 3 |
stomach region | 1.93e-07 | 3 |
mesentery | 1.93e-07 | 3 |
gastrointestinal system serosa | 1.93e-07 | 3 |
mesentery of stomach | 1.93e-07 | 3 |
gut mesentery | 1.93e-07 | 3 |
dorsal mesentery | 1.93e-07 | 3 |
dorsal mesogastrium | 1.93e-07 | 3 |
peritoneal cavity | 1.93e-07 | 3 |
spleen primordium | 1.93e-07 | 3 |
lateral plate mesoderm | 7.08e-07 | 203 |