FFCP PHASE1:Hg19::chr1:226076843..226076847,-: Difference between revisions
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|id=chr1:226076843..226076847,-
|short_description=p2@LEFTY1
|description=CAGE_peak_2_at_LEFTY1_5end
|association_with_transcript=0bp_to_ENST00000272134,NM_020997_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10637 | |EntrezGene=10637 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6552 | |HGNC=6552 | ||
|TSSclassifier=strong | |||
|UniProt=O75610 | |UniProt=O75610 | ||
|association_with_transcript=0bp_to_ENST00000272134,NM_020997_5end | |||
|cluster_id=chr1:226076843..226076847,- | |||
|coexpression_cluster_id=C130 | |||
|description=CAGE_peak_2_at_LEFTY1_5end | |||
|id=chr1:226076843..226076847,- | |||
|ontology_enrichment_celltype=CL:0002322!7.57e-14!5;CL:0002504!2.13e-07!3;CL:1000279!2.13e-07!3;CL:1000280!2.13e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002322;6.99e-28;5!CL:0000039;9.16e-13;7!CL:0000586;9.16e-13;7!CL:0000540;2.25e-09;6!CL:0000404;2.25e-09;6!CL:0002321;3.81e-09;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.44e-28,5;CL:0000039,1.04e-12,7;CL:0000586,1.04e-12,7;CL:0000540,2.26e-09,6;CL:0000031,2.26e-09,6;CL:0000404,2.26e-09,6;CL:0000047,3.98e-07,8;CL:0000313,9.79e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.89e-33;10!UBERON:0005564;3.89e-33;10!CL:0000031;2.25e-09;6!UBERON:0001045;8.75e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2152,9.79e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003135!6.19e-18!11;UBERON:0000059!3.41e-17!11;UBERON:0001155!9.99e-17!9;UBERON:0003101!5.86e-14!22;UBERON:0000079!5.86e-14!22;UBERON:0005156!4.38e-13!59;UBERON:0000990!4.38e-13!59;UBERON:0003133!1.77e-12!48;UBERON:0000473!1.88e-11!8;UBERON:0000160!1.01e-08!27;UBERON:0005409!1.14e-08!35;UBERON:0000991!1.79e-08!21;UBERON:0009196!1.79e-08!21;UBERON:0009117!1.79e-08!21;UBERON:0005564!1.79e-08!21;UBERON:0004921!2.55e-08!129;UBERON:0004185!2.55e-08!129;UBERON:0004176!5.29e-08!22;UBERON:0000466!9.41e-08!126;UBERON:0003886!2.16e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;2.03e-23;11!UBERON:0000473;6.69e-17;8!UBERON:0000991;3.56e-15;21!UBERON:0000922;1.41e-13;49!UBERON:0000059;1.09e-12;11!UBERON:0003101;2.84e-11;22!UBERON:0000079;2.84e-11;22!UBERON:0003133;1.06e-10;44!UBERON:0000160;1.17e-10;17!UBERON:0001155;2.98e-10;9!UBERON:0006947;3.23e-08;3!UBERON:0004054;3.23e-08;3!UBERON:0005409;3.29e-08;22!UBERON:0001301;4.43e-07;1!UBERON:0001154;8.75e-07;1!UBERON:0001153;8.75e-07;1!UBERON:0009854;8.75e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,2.29e-23,11;UBERON:0000473,7.65e-17,8;UBERON:0000991,3.36e-15,21;UBERON:0009196,3.36e-15,21;UBERON:0009117,3.36e-15,21;UBERON:0005564,3.36e-15,21;UBERON:0004176,1.87e-14,22;UBERON:0003133,1.11e-13,48;UBERON:0000059,1.12e-12,11;UBERON:0003101,3.01e-11,22;UBERON:0000079,3.01e-11,22;UBERON:0005156,1.07e-10,59;UBERON:0000990,1.07e-10,59;UBERON:0000160,1.17e-10,17;UBERON:0001155,3.05e-10,9;UBERON:0003886,4.95e-10,54;UBERON:0002553,1.20e-08,61;UBERON:0006947,3.17e-08,3;UBERON:0004054,3.17e-08,3;UBERON:0002323,4.85e-08,46;UBERON:0004458,1.85e-07,49;UBERON:0005409,3.43e-07,25;UBERON:0001301,4.43e-07,1;UBERON:0001154,8.27e-07,1;UBERON:0001153,8.27e-07,1;UBERON:0001045,8.27e-07,1;UBERON:0004911,9.79e-07,1 | |||
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| ||
|short_description=p2@LEFTY1 | |||
}} | }} |
Latest revision as of 00:54, 16 September 2015
Short description: | p2@LEFTY1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LEFTY1_5end |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | 0bp_to_ENST00000272134, NM_020997_5end |
EntrezGene: | LEFTY1 |
HGNC: | 6552 |
UniProt: | O75610 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.44e-28 | 5 |
germ line cell | 1.04e-12 | 7 |
germ cell | 1.04e-12 | 7 |
neuron | 2.26e-09 | 6 |
neuroblast | 2.26e-09 | 6 |
electrically signaling cell | 2.26e-09 | 6 |
neuronal stem cell | 3.98e-07 | 8 |
serous secreting cell | 9.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 2.29e-23 | 11 |
testis | 7.65e-17 | 8 |
gonad | 3.36e-15 | 21 |
indifferent external genitalia | 3.36e-15 | 21 |
indifferent gonad | 3.36e-15 | 21 |
gonad primordium | 3.36e-15 | 21 |
external genitalia | 1.87e-14 | 22 |
reproductive organ | 1.11e-13 | 48 |
large intestine | 1.12e-12 | 11 |
male organism | 3.01e-11 | 22 |
male reproductive system | 3.01e-11 | 22 |
reproductive structure | 1.07e-10 | 59 |
reproductive system | 1.07e-10 | 59 |
intestine | 1.17e-10 | 17 |
colon | 3.05e-10 | 9 |
body cavity precursor | 4.95e-10 | 54 |
anatomical cavity | 1.20e-08 | 61 |
male genital duct | 3.17e-08 | 3 |
internal male genitalia | 3.17e-08 | 3 |
body cavity | 4.85e-08 | 46 |
body cavity or lining | 1.85e-07 | 49 |
gastrointestinal system | 3.43e-07 | 25 |
epididymis | 4.43e-07 | 1 |
vermiform appendix | 8.27e-07 | 1 |
caecum | 8.27e-07 | 1 |
midgut | 8.27e-07 | 1 |
epithelium of female gonad | 9.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 9.79e-07 | 1 |