FFCP PHASE1:Hg19::chr3:186262166..186262170,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1427 | |EntrezGene=1427 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2417 | |HGNC=2417 | ||
|TSSclassifier=strong | |||
|UniProt=P22914 | |UniProt=P22914 | ||
|association_with_transcript=0bp_to_NM_017541,uc003fqe.2_5end | |association_with_transcript=0bp_to_NM_017541,uc003fqe.2_5end | ||
|cluster_id=chr3:186262166..186262170,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_1_at_CRYGS_5end | |description=CAGE_peak_1_at_CRYGS_5end | ||
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|ontology_enrichment_celltype=CL:0000667!6.73e-11!6;CL:0000058!6.73e-11!6;CL:0000138!6.73e-11!6;CL:0000306!4.92e-10!4;CL:0002222!4.92e-10!4;CL:0002224!4.92e-10!4;CL:0002322!1.71e-07!5;CL:0000153!2.91e-07!9;CL:0000447!2.91e-07!9 | |ontology_enrichment_celltype=CL:0000667!6.73e-11!6;CL:0000058!6.73e-11!6;CL:0000138!6.73e-11!6;CL:0000306!4.92e-10!4;CL:0002222!4.92e-10!4;CL:0002224!4.92e-10!4;CL:0002322!1.71e-07!5;CL:0000153!2.91e-07!9;CL:0000447!2.91e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000306;1.92e-41;4!CL:0002222;1.92e-41;4!CL:0002224;1.92e-41;4!CL:0000319;4.69e-19;1!CL:0000138;4.66e-13;6!CL:0000075;4.09e-11;27!CL:0000159;3.27e-10;2!CL:0002570;7.59e-10;8!CL:0000153;5.10e-09;9!CL:0000447;5.10e-09;9 | |ontology_enrichment_celltype_v019=CL:0000306;1.92e-41;4!CL:0002222;1.92e-41;4!CL:0002224;1.92e-41;4!CL:0000319;4.69e-19;1!CL:0000138;4.66e-13;6!CL:0000075;4.09e-11;27!CL:0000159;3.27e-10;2!CL:0002570;7.59e-10;8!CL:0000153;5.10e-09;9!CL:0000447;5.10e-09;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.92e-41,4;CL:0002222,1.92e-41,4;CL:0002224,1.92e-41,4;CL:0000319,3.91e-19,1;CL:0000058,4.52e-13,6;CL:0000138,4.52e-13,6;CL:0000075,4.14e-11,27;CL:0000159,2.99e-10,2;CL:0002570,7.94e-10,8;CL:0000153,5.00e-09,9;CL:0000447,5.00e-09,9 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3030;4.69e-19;1 | |ontology_enrichment_disease_v019=DOID:3030;4.69e-19;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3030,3.91e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0010077!4.92e-10!4;UBERON:0005389!4.92e-10!4;UBERON:0000484!4.92e-10!4;UBERON:0002546!4.92e-10!4;UBERON:0000965!4.92e-10!4;UBERON:0001803!4.92e-10!4;UBERON:0003073!4.92e-10!4;UBERON:0005426!4.92e-10!4;UBERON:0002346!6.96e-08!90 | |ontology_enrichment_uberon=UBERON:0010077!4.92e-10!4;UBERON:0005389!4.92e-10!4;UBERON:0000484!4.92e-10!4;UBERON:0002546!4.92e-10!4;UBERON:0000965!4.92e-10!4;UBERON:0001803!4.92e-10!4;UBERON:0003073!4.92e-10!4;UBERON:0005426!4.92e-10!4;UBERON:0002346!6.96e-08!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;1.92e-41;4!UBERON:0005389;1.92e-41;4!UBERON:0000484;1.92e-41;4!UBERON:0000965;1.92e-41;4!UBERON:0001803;1.92e-41;4!UBERON:0007625;1.45e-15;11!UBERON:0000970;5.56e-15;20!UBERON:0002104;2.76e-14;21!UBERON:0000020;4.47e-13;23!UBERON:0001032;1.52e-12;24!UBERON:0004456;1.52e-12;24!UBERON:0001801;2.26e-12;14!UBERON:0000019;2.81e-09;19!UBERON:0000047;2.81e-09;19!UBERON:0004088;2.81e-09;19!UBERON:0010230;2.81e-09;19!UBERON:0001456;1.90e-08;21 | |ontology_enrichment_uberon_v019=UBERON:0010077;1.92e-41;4!UBERON:0005389;1.92e-41;4!UBERON:0000484;1.92e-41;4!UBERON:0000965;1.92e-41;4!UBERON:0001803;1.92e-41;4!UBERON:0007625;1.45e-15;11!UBERON:0000970;5.56e-15;20!UBERON:0002104;2.76e-14;21!UBERON:0000020;4.47e-13;23!UBERON:0001032;1.52e-12;24!UBERON:0004456;1.52e-12;24!UBERON:0001801;2.26e-12;14!UBERON:0000019;2.81e-09;19!UBERON:0000047;2.81e-09;19!UBERON:0004088;2.81e-09;19!UBERON:0010230;2.81e-09;19!UBERON:0001456;1.90e-08;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,1.92e-41,4;UBERON:0005389,1.92e-41,4;UBERON:0000484,1.92e-41,4;UBERON:0002546,1.92e-41,4;UBERON:0000965,1.92e-41,4;UBERON:0001803,1.92e-41,4;UBERON:0003073,1.92e-41,4;UBERON:0005426,1.92e-41,4;UBERON:0000076,3.92e-21,8;UBERON:0007625,1.45e-15,11;UBERON:0000970,2.76e-14,21;UBERON:0002104,2.76e-14,21;UBERON:0000020,1.52e-12,24;UBERON:0001032,1.52e-12,24;UBERON:0004456,1.52e-12,24;UBERON:0001801,2.26e-12,14;UBERON:0000019,7.66e-09,20;UBERON:0000047,7.66e-09,20;UBERON:0010312,7.66e-09,20;UBERON:0004088,7.66e-09,20;UBERON:0010230,7.66e-09,20;UBERON:0003072,7.66e-09,20;UBERON:0004128,7.66e-09,20;UBERON:0003071,7.66e-09,20;UBERON:0001456,4.34e-08,22 | |||
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| ||
|short_description=p1@CRYGS | |short_description=p1@CRYGS | ||
}} | }} |
Latest revision as of 04:47, 17 September 2015
Short description: | p1@CRYGS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CRYGS_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_NM_017541, uc003fqe.2_5end |
EntrezGene: | CRYGS |
HGNC: | 2417 |
UniProt: | P22914 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.92e-41 | 4 |
vertebrate lens cell | 1.92e-41 | 4 |
lens epithelial cell | 1.92e-41 | 4 |
mucus secreting cell | 3.91e-19 | 1 |
chondroblast | 4.52e-13 | 6 |
chondrocyte | 4.52e-13 | 6 |
columnar/cuboidal epithelial cell | 4.14e-11 | 27 |
seromucus secreting cell | 2.99e-10 | 2 |
mesenchymal stem cell of adipose | 7.94e-10 | 8 |
GAG secreting cell | 5.00e-09 | 9 |
carbohydrate secreting cell | 5.00e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 1.92e-41 | 4 |
transparent eye structure | 1.92e-41 | 4 |
simple cuboidal epithelium | 1.92e-41 | 4 |
cranial placode | 1.92e-41 | 4 |
lens of camera-type eye | 1.92e-41 | 4 |
epithelium of lens | 1.92e-41 | 4 |
lens placode | 1.92e-41 | 4 |
lens vesicle | 1.92e-41 | 4 |
external ectoderm | 3.92e-21 | 8 |
pigment epithelium of eye | 1.45e-15 | 11 |
eye | 2.76e-14 | 21 |
visual system | 2.76e-14 | 21 |
sense organ | 1.52e-12 | 24 |
sensory system | 1.52e-12 | 24 |
entire sense organ system | 1.52e-12 | 24 |
anterior segment of eyeball | 2.26e-12 | 14 |
camera-type eye | 7.66e-09 | 20 |
simple eye | 7.66e-09 | 20 |
immature eye | 7.66e-09 | 20 |
ocular region | 7.66e-09 | 20 |
eyeball of camera-type eye | 7.66e-09 | 20 |
optic cup | 7.66e-09 | 20 |
optic vesicle | 7.66e-09 | 20 |
eye primordium | 7.66e-09 | 20 |
face | 4.34e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 3.91e-19 | 1 |