FFCP PHASE1:Hg19::chr3:100499042..100499055,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:100499042..100499055,- | |||
|coexpression_cluster_id=C404 | |coexpression_cluster_id=C404 | ||
|description=CAGE_peak_at_chr3:100499042..100499055,- | |description=CAGE_peak_at_chr3:100499042..100499055,- | ||
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|ontology_enrichment_celltype=CL:0000057!1.21e-14!75;CL:0000055!3.32e-10!180;CL:0000153!1.92e-08!9;CL:0000447!1.92e-08!9;CL:0002620!2.99e-08!23;CL:0000667!8.01e-07!6;CL:0000058!8.01e-07!6;CL:0000138!8.01e-07!6 | |ontology_enrichment_celltype=CL:0000057!1.21e-14!75;CL:0000055!3.32e-10!180;CL:0000153!1.92e-08!9;CL:0000447!1.92e-08!9;CL:0002620!2.99e-08!23;CL:0000667!8.01e-07!6;CL:0000058!8.01e-07!6;CL:0000138!8.01e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000153;5.74e-12;9!CL:0000447;5.74e-12;9!CL:0000197;5.46e-10;6!CL:0000098;5.46e-10;6!CL:0002167;5.46e-10;6!CL:0000214;8.19e-10;3!CL:0000135;2.05e-09;3!CL:0000388;2.05e-09;3!CL:0000515;3.68e-09;3!CL:0000499;7.59e-08;28!CL:0002591;1.74e-07;1!CL:0000569;2.89e-07;4!CL:0000327;3.29e-07;15!CL:0000056;4.47e-07;4!CL:1000306;4.47e-07;4!CL:0002547;4.47e-07;4 | |ontology_enrichment_celltype_v019=CL:0000153;5.74e-12;9!CL:0000447;5.74e-12;9!CL:0000197;5.46e-10;6!CL:0000098;5.46e-10;6!CL:0002167;5.46e-10;6!CL:0000214;8.19e-10;3!CL:0000135;2.05e-09;3!CL:0000388;2.05e-09;3!CL:0000515;3.68e-09;3!CL:0000499;7.59e-08;28!CL:0002591;1.74e-07;1!CL:0000569;2.89e-07;4!CL:0000327;3.29e-07;15!CL:0000056;4.47e-07;4!CL:1000306;4.47e-07;4!CL:0002547;4.47e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,5.14e-12,9;CL:0000447,5.14e-12,9;CL:0000197,6.89e-10,6;CL:0000098,6.89e-10,6;CL:0002167,6.89e-10,6;CL:0000214,8.38e-10,3;CL:0000135,1.97e-09,3;CL:0000388,1.97e-09,3;CL:0000499,7.14e-08,28;CL:0002591,2.17e-07,1;CL:0000569,2.18e-07,4;CL:0000011,2.18e-07,4;CL:0000327,3.09e-07,15;CL:1000306,3.49e-07,4;CL:0002547,3.49e-07,4;CL:0000515,5.22e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004874;4.88e-08;1!CL:0000011;2.89e-07;4!CL:0000515;4.47e-07;4 | |ontology_enrichment_development_v019=UBERON:0004874;4.88e-08;1!CL:0000011;2.89e-07;4!CL:0000515;4.47e-07;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2513;4.88e-08;1 | |ontology_enrichment_disease_v019=DOID:2513;4.88e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:2513,5.22e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.65e-07!95 | |ontology_enrichment_uberon=UBERON:0003102!1.65e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;8.19e-10;3!UBERON:0007616;8.19e-10;3!UBERON:0002217;8.19e-10;3!UBERON:0002018;8.19e-10;3!UBERON:0007846;2.05e-09;3!UBERON:0000043;2.05e-09;3!UBERON:0007845;2.05e-09;3!UBERON:0000989;4.88e-08;1!UBERON:0008811;4.88e-08;1!UBERON:0002135;1.74e-07;1!UBERON:0002171;1.74e-07;1!UBERON:0006518;1.74e-07;1!UBERON:0008949;1.74e-07;1!UBERON:0000101;1.74e-07;1!UBERON:0002167;1.74e-07;1!UBERON:0004797;4.47e-07;4!UBERON:0000415;4.47e-07;4!UBERON:0007240;4.47e-07;4!UBERON:0005742;4.47e-07;4!UBERON:0005734;4.47e-07;4!UBERON:0004664;4.47e-07;4!UBERON:0004663;4.47e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0006915;8.19e-10;3!UBERON:0007616;8.19e-10;3!UBERON:0002217;8.19e-10;3!UBERON:0002018;8.19e-10;3!UBERON:0007846;2.05e-09;3!UBERON:0000043;2.05e-09;3!UBERON:0007845;2.05e-09;3!UBERON:0000989;4.88e-08;1!UBERON:0008811;4.88e-08;1!UBERON:0002135;1.74e-07;1!UBERON:0002171;1.74e-07;1!UBERON:0006518;1.74e-07;1!UBERON:0008949;1.74e-07;1!UBERON:0000101;1.74e-07;1!UBERON:0002167;1.74e-07;1!UBERON:0004797;4.47e-07;4!UBERON:0000415;4.47e-07;4!UBERON:0007240;4.47e-07;4!UBERON:0005742;4.47e-07;4!UBERON:0005734;4.47e-07;4!UBERON:0004664;4.47e-07;4!UBERON:0004663;4.47e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,8.38e-10,3;UBERON:0007616,8.38e-10,3;UBERON:0002217,8.38e-10,3;UBERON:0002018,8.38e-10,3;UBERON:0007846,1.97e-09,3;UBERON:0000043,1.97e-09,3;UBERON:0007845,1.97e-09,3;UBERON:0004797,1.65e-08,7;UBERON:0000989,4.89e-08,1;UBERON:0008811,4.89e-08,1;UBERON:0006258,4.89e-08,1;UBERON:0005876,4.89e-08,1;UBERON:0004874,4.89e-08,1;UBERON:0002171,1.15e-07,1;UBERON:0006518,1.15e-07,1;UBERON:0008949,1.15e-07,1;UBERON:0000101,1.15e-07,1;UBERON:0002167,1.15e-07,1;UBERON:0002135,2.31e-07,1;UBERON:0000415,3.49e-07,4;UBERON:0007240,3.49e-07,4;UBERON:0005742,3.49e-07,4;UBERON:0005734,3.49e-07,4;UBERON:0004664,3.49e-07,4;UBERON:0004663,3.49e-07,4 | |||
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| ||
|short_description=p@chr3:100499042..100499055,- | |short_description=p@chr3:100499042..100499055,- | ||
}} | }} |
Latest revision as of 13:39, 29 July 2015
Short description: | p@chr3:100499042..100499055, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:100499042..100499055, - |
Coexpression cluster: | C404_Fibroblast_mesenchymal_Synoviocyte_Smooth_basal_mesodermal_Chondrocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 5.14e-12 | 9 |
carbohydrate secreting cell | 5.14e-12 | 9 |
receptor cell | 6.89e-10 | 6 |
sensory epithelial cell | 6.89e-10 | 6 |
olfactory epithelial cell | 6.89e-10 | 6 |
synovial cell | 8.38e-10 | 3 |
fibrocyte | 1.97e-09 | 3 |
tendon cell | 1.97e-09 | 3 |
stromal cell | 7.14e-08 | 28 |
smooth muscle cell of the pulmonary artery | 2.17e-07 | 1 |
cardiac mesenchymal cell | 2.18e-07 | 4 |
migratory trunk neural crest cell | 2.18e-07 | 4 |
extracellular matrix secreting cell | 3.09e-07 | 15 |
fibroblast of tunica adventitia of artery | 3.49e-07 | 4 |
fibroblast of the aortic adventitia | 3.49e-07 | 4 |
skeletal muscle myoblast | 5.22e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 8.38e-10 | 3 |
layer of synovial tissue | 8.38e-10 | 3 |
synovial joint | 8.38e-10 | 3 |
synovial membrane of synovial joint | 8.38e-10 | 3 |
dense regular connective tissue | 1.97e-09 | 3 |
tendon | 1.97e-09 | 3 |
regular connective tissue | 1.97e-09 | 3 |
blood vessel layer | 1.65e-08 | 7 |
penis | 4.89e-08 | 1 |
intromittent organ | 4.89e-08 | 1 |
lateral plate mesenchyme | 4.89e-08 | 1 |
undifferentiated genital tubercle | 4.89e-08 | 1 |
somatopleure | 4.89e-08 | 1 |
lower lobe of right lung | 1.15e-07 | 1 |
right lung lobe | 1.15e-07 | 1 |
lower lobe of lung | 1.15e-07 | 1 |
lobe of lung | 1.15e-07 | 1 |
right lung | 1.15e-07 | 1 |
mitral valve | 2.31e-07 | 1 |
artery wall | 3.49e-07 | 4 |
tunica adventitia of artery | 3.49e-07 | 4 |
adventitia | 3.49e-07 | 4 |
tunica adventitia of blood vessel | 3.49e-07 | 4 |
aorta tunica adventitia | 3.49e-07 | 4 |
aorta wall | 3.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 5.22e-08 | 1 |