FFCP PHASE1:Hg19::chr9:91792949..91792960,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53358 | |EntrezGene=53358 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18181 | |HGNC=18181 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=415bp_to_DQ896663_5end | |association_with_transcript=415bp_to_DQ896663_5end | ||
|cluster_id=chr9:91792949..91792960,- | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_13_at_SHC3_5end | |description=CAGE_peak_13_at_SHC3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005795;6.34e-08;10 | |ontology_enrichment_development_v019=UBERON:0005795;6.34e-08;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;3.66e-23;3!DOID:127;3.66e-23;3!DOID:0060072;9.45e-18;4 | |ontology_enrichment_disease_v019=DOID:0060084;3.66e-23;3!DOID:127;3.66e-23;3!DOID:0060072;9.45e-18;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.09e-23,3;DOID:127,4.09e-23,3;DOID:0060072,1.03e-17,4 | |||
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| ||
|short_description=p13@SHC3 | |short_description=p13@SHC3 | ||
}} | }} |
Latest revision as of 04:23, 18 September 2015
Short description: | p13@SHC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SHC3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 415bp_to_DQ896663_5end |
EntrezGene: | SHC3 |
HGNC: | 18181 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gyrus | 9.76e-45 | 6 |
middle temporal gyrus | 3.61e-34 | 2 |
middle frontal gyrus | 5.04e-34 | 2 |
frontal cortex | 3.27e-23 | 3 |
neocortex | 1.02e-13 | 20 |
regional part of cerebral cortex | 1.25e-12 | 22 |
cerebral cortex | 2.63e-11 | 25 |
pallium | 2.63e-11 | 25 |
temporal lobe | 8.16e-11 | 6 |
regional part of telencephalon | 3.79e-09 | 32 |
cerebral hemisphere | 3.79e-09 | 32 |
brain grey matter | 1.09e-08 | 34 |
gray matter | 1.09e-08 | 34 |
telencephalon | 1.09e-08 | 34 |
regional part of forebrain | 2.04e-07 | 41 |
forebrain | 2.04e-07 | 41 |
anterior neural tube | 2.04e-07 | 41 |
future forebrain | 2.04e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.09e-23 | 3 |
leiomyoma | 4.09e-23 | 3 |
benign neoplasm | 1.03e-17 | 4 |