FFCP PHASE1:Hg19::chr10:102106957..102106970,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6319 | |EntrezGene=6319 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10571 | |HGNC=10571 | ||
|TSSclassifier=strong | |||
|UniProt=O00767 | |UniProt=O00767 | ||
|association_with_transcript=76bp_to_ENST00000370355_5end | |association_with_transcript=76bp_to_ENST00000370355_5end | ||
|cluster_id=chr10:102106957..102106970,+ | |||
|coexpression_cluster_id=C2969 | |coexpression_cluster_id=C2969 | ||
|description=CAGE_peak_5_at_SCD_5end | |description=CAGE_peak_5_at_SCD_5end | ||
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|ontology_enrichment_celltype=CL:0000221!6.89e-13!71;CL:0000066!1.10e-11!254;CL:0000133!4.24e-10!59;CL:0000333!1.91e-09!41;CL:0002321!4.48e-08!248;CL:0000220!8.71e-08!246;CL:0002319!8.82e-07!25 | |ontology_enrichment_celltype=CL:0000221!6.89e-13!71;CL:0000066!1.10e-11!254;CL:0000133!4.24e-10!59;CL:0000333!1.91e-09!41;CL:0002321!4.48e-08!248;CL:0000220!8.71e-08!246;CL:0002319!8.82e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002319;7.11e-07;25 | |ontology_enrichment_celltype_v019=CL:0002319;7.11e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.68e-13,72;CL:0000066,9.90e-11,253;CL:0000133,4.09e-10,59;CL:0000333,1.43e-09,41;CL:0002321,3.22e-07,250 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!6.88e-19!235;DOID:14566!7.06e-19!239;DOID:0050687!1.76e-14!143;DOID:305!2.06e-09!106;DOID:0050686!1.46e-07!137 | |ontology_enrichment_disease=DOID:162!6.88e-19!235;DOID:14566!7.06e-19!239;DOID:0050687!1.76e-14!143;DOID:305!2.06e-09!106;DOID:0050686!1.46e-07!137 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,4.10e-18,235;DOID:14566,4.75e-18,239;DOID:0050687,4.56e-14,143;DOID:305,6.24e-09,106;DOID:0050686,4.48e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000924!1.43e-17!173;UBERON:0006601!1.43e-17!173;UBERON:0004121!3.26e-17!169;UBERON:0000475!1.70e-12!365;UBERON:0000033!6.21e-12!123;UBERON:0000073!1.46e-11!94;UBERON:0001016!1.46e-11!94;UBERON:0000153!3.29e-10!129;UBERON:0007811!3.29e-10!129;UBERON:0001017!1.38e-09!82;UBERON:0005743!2.12e-09!86;UBERON:0000064!4.52e-09!219;UBERON:0000481!6.33e-08!347;UBERON:0000955!1.45e-07!69;UBERON:0006238!1.45e-07!69 | |ontology_enrichment_uberon=UBERON:0000924!1.43e-17!173;UBERON:0006601!1.43e-17!173;UBERON:0004121!3.26e-17!169;UBERON:0000475!1.70e-12!365;UBERON:0000033!6.21e-12!123;UBERON:0000073!1.46e-11!94;UBERON:0001016!1.46e-11!94;UBERON:0000153!3.29e-10!129;UBERON:0007811!3.29e-10!129;UBERON:0001017!1.38e-09!82;UBERON:0005743!2.12e-09!86;UBERON:0000064!4.52e-09!219;UBERON:0000481!6.33e-08!347;UBERON:0000955!1.45e-07!69;UBERON:0006238!1.45e-07!69 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.24e-17,171;UBERON:0000924,6.24e-17,171;UBERON:0006601,6.24e-17,171;UBERON:0001016,1.76e-11,89;UBERON:0011216,2.00e-10,223;UBERON:0001017,2.80e-09,81;UBERON:0010371,5.84e-09,104;UBERON:0000955,1.82e-07,68;UBERON:0006238,1.82e-07,68 | |||
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| ||
|short_description=p5@SCD | |short_description=p5@SCD | ||
}} | }} |
Latest revision as of 20:28, 15 September 2015
Short description: | p5@SCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCD_5end |
Coexpression cluster: | C2969_Melanocyte_Meningeal_Fibroblast_gall_breast_glioblastoma_melanoma |
Association with transcript: | 76bp_to_ENST00000370355_5end |
EntrezGene: | SCD |
HGNC: | 10571 |
UniProt: | O00767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.68e-13 | 72 |
epithelial cell | 9.90e-11 | 253 |
neurectodermal cell | 4.09e-10 | 59 |
migratory neural crest cell | 1.43e-09 | 41 |
embryonic cell | 3.22e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.24e-17 | 171 |
ectoderm | 6.24e-17 | 171 |
presumptive ectoderm | 6.24e-17 | 171 |
nervous system | 1.76e-11 | 89 |
organ system subdivision | 2.00e-10 | 223 |
central nervous system | 2.80e-09 | 81 |
ecto-epithelium | 5.84e-09 | 104 |
brain | 1.82e-07 | 68 |
future brain | 1.82e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.10e-18 | 235 |
disease of cellular proliferation | 4.75e-18 | 239 |
cell type cancer | 4.56e-14 | 143 |
carcinoma | 6.24e-09 | 106 |
organ system cancer | 4.48e-07 | 137 |