FFCP PHASE1:Hg19::chr1:31971796..31971801,+: Difference between revisions
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|id=chr1:31971796..31971801,+
|short_description=p1@uc001bsx.2,p2@uc001bsw.1
|description=CAGE_peak_1_at_uc001bsx.2_5end,CAGE_peak_2_at_uc001bsw.1_5end
|association...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_uc001bsw.1,uc001bsx.2_5end | |||
|cluster_id=chr1:31971796..31971801,+ | |||
|coexpression_cluster_id=C141 | |||
|description=CAGE_peak_1_at_uc001bsx.2_5end,CAGE_peak_2_at_uc001bsw.1_5end | |||
|id=chr1:31971796..31971801,+ | |||
|ontology_enrichment_celltype=CL:0002127!1.25e-09!1;CL:0000914!1.25e-09!1;CL:0000911!1.25e-09!1;CL:0000814!1.25e-09!1;CL:0002042!1.25e-09!1;CL:0002039!1.25e-09!1;CL:0002040!1.25e-09!1;CL:0002041!1.25e-09!1;CL:1001319!2.26e-09!1;CL:1000600!2.26e-09!1 | |||
|ontology_enrichment_celltype_v019=CL:0000945;6.10e-10;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.10e-10,24;CL:0000826,6.10e-10,24;CL:0000838,4.81e-08,52;CL:0000542,6.71e-08,53;CL:0000051,6.71e-08,53 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.68e-09!51;DOID:0060083!1.68e-09!51;DOID:1240!3.10e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:0060058;6.13e-11;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,6.61e-11,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!6.68e-30!7;UBERON:0002370!7.82e-20!4;UBERON:0005058!7.82e-20!4;UBERON:0009113!7.82e-20!4;UBERON:0003295!7.82e-20!4;UBERON:0005562!7.82e-20!4;UBERON:0003351!2.03e-13!6;UBERON:0002106!5.90e-12!3;UBERON:0004854!5.90e-12!3;UBERON:0009034!5.90e-12!3;UBERON:0002095!5.90e-12!3;UBERON:0004782!5.90e-12!3;UBERON:0003281!5.90e-12!3;UBERON:0009664!5.90e-12!3;UBERON:0002296!5.90e-12!3;UBERON:0005602!5.90e-12!3;UBERON:0001179!5.90e-12!3;UBERON:0006293!5.90e-12!3;UBERON:0000945!6.32e-10!8;UBERON:0010039!6.32e-10!8;UBERON:0004645!2.26e-09!1;UBERON:0001256!2.26e-09!1;UBERON:0001259!2.26e-09!1;UBERON:0000974!2.99e-08!10;UBERON:0003408!2.99e-08!10;UBERON:0001042!2.99e-08!10;UBERON:0009145!2.99e-08!10;UBERON:0005057!5.88e-08!26;UBERON:0006562!1.53e-07!11;UBERON:0009722!1.53e-07!11;UBERON:0007690!1.53e-07!11;UBERON:0002075!2.00e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.53e-50;2!UBERON:0005058;3.53e-50;2!UBERON:0009113;3.53e-50;2!UBERON:0004177;7.36e-45;5!UBERON:0005057;7.36e-45;5!UBERON:0002106;1.60e-09;3!UBERON:0000077;6.23e-09;27!UBERON:0002405;6.23e-09;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.57e-32,7;UBERON:0005057,2.57e-32,7;UBERON:0002370,8.66e-26,4;UBERON:0005058,8.66e-26,4;UBERON:0009113,8.66e-26,4;UBERON:0003295,8.66e-26,4;UBERON:0005562,8.66e-26,4;UBERON:0003351,1.44e-17,6;UBERON:0000974,5.98e-11,10;UBERON:0003408,5.98e-11,10;UBERON:0001042,5.98e-11,10;UBERON:0009145,5.98e-11,10;UBERON:0006562,4.83e-10,11;UBERON:0009722,4.83e-10,11;UBERON:0007690,4.83e-10,11;UBERON:0002106,1.81e-09,3;UBERON:0004854,1.81e-09,3;UBERON:0009034,1.81e-09,3;UBERON:0002095,1.81e-09,3;UBERON:0004782,1.81e-09,3;UBERON:0003281,1.81e-09,3;UBERON:0009664,1.81e-09,3;UBERON:0002296,1.81e-09,3;UBERON:0005602,1.81e-09,3;UBERON:0001179,1.81e-09,3;UBERON:0006293,1.81e-09,3;UBERON:0000077,2.33e-08,29 | |||
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|short_description=p1@uc001bsx.2,p2@uc001bsw.1 | |||
}} | }} |
Latest revision as of 07:12, 28 July 2015
Short description: | p1@uc001bsx.2, p2@uc001bsw.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001bsx.2_5end, CAGE_peak_2_at_uc001bsw.1_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | -14bp_to_uc001bsw.1, uc001bsx.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.10e-10 | 24 |
pro-B cell | 6.10e-10 | 24 |
lymphoid lineage restricted progenitor cell | 4.81e-08 | 52 |
lymphocyte | 6.71e-08 | 53 |
common lymphoid progenitor | 6.71e-08 | 53 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.57e-32 | 7 |
immune organ | 2.57e-32 | 7 |
thymus | 8.66e-26 | 4 |
hemolymphoid system gland | 8.66e-26 | 4 |
thymic region | 8.66e-26 | 4 |
pharyngeal gland | 8.66e-26 | 4 |
thymus primordium | 8.66e-26 | 4 |
pharyngeal epithelium | 1.44e-17 | 6 |
neck | 5.98e-11 | 10 |
gland of gut | 5.98e-11 | 10 |
chordate pharynx | 5.98e-11 | 10 |
pharyngeal region of foregut | 5.98e-11 | 10 |
pharynx | 4.83e-10 | 11 |
entire pharyngeal arch endoderm | 4.83e-10 | 11 |
early pharyngeal endoderm | 4.83e-10 | 11 |
spleen | 1.81e-09 | 3 |
gastrointestinal system mesentery | 1.81e-09 | 3 |
stomach region | 1.81e-09 | 3 |
mesentery | 1.81e-09 | 3 |
gastrointestinal system serosa | 1.81e-09 | 3 |
mesentery of stomach | 1.81e-09 | 3 |
gut mesentery | 1.81e-09 | 3 |
dorsal mesentery | 1.81e-09 | 3 |
dorsal mesogastrium | 1.81e-09 | 3 |
peritoneal cavity | 1.81e-09 | 3 |
spleen primordium | 1.81e-09 | 3 |
mixed endoderm/mesoderm-derived structure | 2.33e-08 | 29 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 6.61e-11 | 10 |