FFCP PHASE1:Hg19::chr10:135044123..135044144,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8433 | |EntrezGene=8433 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12634 | |HGNC=12634 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=330bp_to_BC166624_5end | |association_with_transcript=330bp_to_BC166624_5end | ||
|cluster_id=chr10:135044123..135044144,+ | |||
|coexpression_cluster_id=C128 | |coexpression_cluster_id=C128 | ||
|description=CAGE_peak_5_at_UTF1_5end | |description=CAGE_peak_5_at_UTF1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!2.05e-22!42;CL:0000860!1.67e-20!45;CL:0000766!2.18e-20!76;CL:0000763!2.24e-19!112;CL:0000049!2.24e-19!112;CL:0002194!1.68e-18!63;CL:0000576!1.68e-18!63;CL:0000040!1.68e-18!63;CL:0000559!1.68e-18!63;CL:0000037!2.19e-18!172;CL:0000566!2.19e-18!172;CL:0002009!1.01e-17!65;CL:0000988!1.04e-16!182;CL:0000839!5.68e-16!70;CL:0000557!1.19e-15!71;CL:0000738!1.34e-15!140;CL:0002032!2.28e-14!165;CL:0000837!2.28e-14!165;CL:0002322!5.20e-14!5;CL:0002087!6.45e-14!119;CL:0002031!4.64e-10!124;CL:0002393!1.50e-09!9;CL:0002397!1.50e-09!9;CL:0000767!6.07e-09!3;CL:0000842!2.68e-08!3 | |ontology_enrichment_celltype=CL:0002057!2.05e-22!42;CL:0000860!1.67e-20!45;CL:0000766!2.18e-20!76;CL:0000763!2.24e-19!112;CL:0000049!2.24e-19!112;CL:0002194!1.68e-18!63;CL:0000576!1.68e-18!63;CL:0000040!1.68e-18!63;CL:0000559!1.68e-18!63;CL:0000037!2.19e-18!172;CL:0000566!2.19e-18!172;CL:0002009!1.01e-17!65;CL:0000988!1.04e-16!182;CL:0000839!5.68e-16!70;CL:0000557!1.19e-15!71;CL:0000738!1.34e-15!140;CL:0002032!2.28e-14!165;CL:0000837!2.28e-14!165;CL:0002322!5.20e-14!5;CL:0002087!6.45e-14!119;CL:0002031!4.64e-10!124;CL:0002393!1.50e-09!9;CL:0002397!1.50e-09!9;CL:0000767!6.07e-09!3;CL:0000842!2.68e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;9.20e-44;5!CL:0000767;1.12e-26;3!CL:0000039;5.62e-21;7!CL:0000586;5.62e-21;7!CL:0002321;1.45e-14;15!CL:0000094;2.23e-10;8!CL:0000148;1.54e-08;10!CL:0000081;1.11e-07;11 | |ontology_enrichment_celltype_v019=CL:0002322;9.20e-44;5!CL:0000767;1.12e-26;3!CL:0000039;5.62e-21;7!CL:0000586;5.62e-21;7!CL:0002321;1.45e-14;15!CL:0000094;2.23e-10;8!CL:0000148;1.54e-08;10!CL:0000081;1.11e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.97e-44,5;CL:0000767,1.12e-26,3;CL:0000039,5.63e-21,7;CL:0000586,5.63e-21,7;CL:0000094,2.23e-10,8;CL:0002393,3.50e-09,9;CL:0002397,3.50e-09,9;CL:0000148,1.44e-08,10;CL:0000541,1.44e-08,10;CL:0000766,2.93e-08,72;CL:0000081,1.11e-07,11;CL:0000860,6.75e-07,42;CL:0002057,6.75e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.88e-22;10!UBERON:0005564;2.88e-22;10 | |ontology_enrichment_development_v019=UBERON:0009117;2.88e-22;10!UBERON:0005564;2.88e-22;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:225;7.54e-10;1!DOID:3095;8.89e-07;22!DOID:2994;8.89e-07;22 | |ontology_enrichment_disease_v019=DOID:225;7.54e-10;1!DOID:3095;8.89e-07;22!DOID:2994;8.89e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:225,1.07e-09,1;DOID:3095,8.89e-07,22;DOID:2994,8.89e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0002390!6.19e-19!102;UBERON:0003061!6.19e-19!102;UBERON:0002193!2.02e-16!112;UBERON:0002371!2.23e-14!80;UBERON:0001474!4.90e-14!86;UBERON:0000473!5.85e-12!8;UBERON:0002405!2.47e-11!115;UBERON:0004765!6.63e-11!101;UBERON:0001434!6.63e-11!101;UBERON:0003135!1.92e-08!11 | |ontology_enrichment_uberon=UBERON:0002390!6.19e-19!102;UBERON:0003061!6.19e-19!102;UBERON:0002193!2.02e-16!112;UBERON:0002371!2.23e-14!80;UBERON:0001474!4.90e-14!86;UBERON:0000473!5.85e-12!8;UBERON:0002405!2.47e-11!115;UBERON:0004765!6.63e-11!101;UBERON:0001434!6.63e-11!101;UBERON:0003135!1.92e-08!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.66e-28;8!UBERON:0003135;3.09e-20;11!UBERON:0000991;1.55e-10;21!UBERON:0003101;4.74e-10;22!UBERON:0000079;4.74e-10;22!UBERON:0000922;9.78e-09;49 | |ontology_enrichment_uberon_v019=UBERON:0000473;7.66e-28;8!UBERON:0003135;3.09e-20;11!UBERON:0000991;1.55e-10;21!UBERON:0003101;4.74e-10;22!UBERON:0000079;4.74e-10;22!UBERON:0000922;9.78e-09;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,9.05e-28,8;UBERON:0003135,3.49e-20,11;UBERON:0000991,1.64e-10,21;UBERON:0009196,1.64e-10,21;UBERON:0009117,1.64e-10,21;UBERON:0005564,1.64e-10,21;UBERON:0004176,5.03e-10,22;UBERON:0003101,5.03e-10,22;UBERON:0000079,5.03e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,1.15148819429164,2.16742572642506,0,0,0,0,0,0.293600439334847,0,1.60435557976113,0.651032612147555,0,0,0,0.145398238779565,0,0.485168122375632,0,0.411167888021826,0.619412741790207,0,0.512321413058201,0,0.344745680736619,0,0,0.188242339542605,0,0,0.612167784741805,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0.521482918420201,1.08594422352558,0,0,0,0.211255286311942,1.91343869968539,0,1.01095768031846,2.25265339262259,0.803627933485401,0,1.19350006319454,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0.953962497221368,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90315859614705,1.85541675650079,2.67246068599892,2.28054321033815,3.28017106138317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,1.07857100409308,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0,0,0.166849141711909,0,0.556812347790485,0,0.811367035427949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.498635045700469,0.451191321234361,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0.207376382794494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.176512253383001,0,0,0,0,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803765742325096,0.412618309791701,2.07720169014593,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.752103283492572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.187967835959707,0.386747327841463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,9.28098350652034,12.8264354527469,6.06506336929976,8.77476387523313,0.530450887527676,1.07185652062471,0,0,0,0,0.129177819672012,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,1.15148819429164,2.16742572642506,0,0,0,0,0,0.293600439334847,0,1.60435557976113,0.651032612147555,0,0,0,0.145398238779565,0,0.485168122375632,0,0.411167888021826,0.619412741790207,0,0.512321413058201,0,0.344745680736619,0,0,0.188242339542605,0,0,0.612167784741805,0.320929027076094,0.639337125799041,0,0.199463657621632,0,0,0,0,0,0.521482918420201,1.08594422352558,0,0,0,0.211255286311942,1.91343869968539,0,1.01095768031846,2.25265339262259,0.803627933485401,0,1.19350006319454,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0.953962497221368,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90315859614705,1.85541675650079,2.67246068599892,2.28054321033815,3.28017106138317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,1.07857100409308,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0,0,0.166849141711909,0,0.556812347790485,0,0.811367035427949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.498635045700469,0.451191321234361,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0.207376382794494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.176512253383001,0,0,0,0,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803765742325096,0.412618309791701,2.07720169014593,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.752103283492572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.187967835959707,0.386747327841463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218531143927391,0,9.28098350652034,12.8264354527469,6.06506336929976,8.77476387523313,0.530450887527676,1.07185652062471,0,0,0,0,0.129177819672012,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p5@UTF1 | |short_description=p5@UTF1 | ||
}} | }} |
Latest revision as of 04:47, 17 September 2015
Short description: | p5@UTF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_UTF1_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | 330bp_to_BC166624_5end |
EntrezGene: | UTF1 |
HGNC: | 12634 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.97e-44 | 5 |
basophil | 1.12e-26 | 3 |
germ line cell | 5.63e-21 | 7 |
germ cell | 5.63e-21 | 7 |
granulocyte | 2.23e-10 | 8 |
intermediate monocyte | 3.50e-09 | 9 |
CD14-positive, CD16-positive monocyte | 3.50e-09 | 9 |
melanocyte | 1.44e-08 | 10 |
melanoblast | 1.44e-08 | 10 |
myeloid leukocyte | 2.93e-08 | 72 |
blood cell | 1.11e-07 | 11 |
classical monocyte | 6.75e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.75e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
testis | 9.05e-28 | 8 |
male reproductive organ | 3.49e-20 | 11 |
gonad | 1.64e-10 | 21 |
indifferent external genitalia | 1.64e-10 | 21 |
indifferent gonad | 1.64e-10 | 21 |
gonad primordium | 1.64e-10 | 21 |
external genitalia | 5.03e-10 | 22 |
male organism | 5.03e-10 | 22 |
male reproductive system | 5.03e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
syndrome | 1.07e-09 | 1 |
germ cell and embryonal cancer | 8.89e-07 | 22 |
germ cell cancer | 8.89e-07 | 22 |