FFCP PHASE1:Hg19::chr1:39568898..39568917,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:39568898..39568917,+
|short_description=p@chr1:39568898..39568917,+
|description=CAGE_peak_at_chr1:39568898..39568917,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:39568898..39568917,+ | |||
|description=CAGE_peak_at_chr1:39568898..39568917,+ | |||
|id=chr1:39568898..39568917,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.17e-14!42;CL:0000860!2.79e-13!45;CL:0002009!1.26e-12!65;CL:0000557!5.66e-11!71;CL:0002194!9.06e-11!63;CL:0000576!9.06e-11!63;CL:0000040!9.06e-11!63;CL:0000559!9.06e-11!63;CL:0002031!7.57e-10!124;CL:0000738!1.01e-09!140;CL:0002087!1.04e-09!119;CL:0000839!4.45e-09!70;CL:0000047!5.86e-09!8;CL:0000540!1.41e-08!6;CL:0000031!1.41e-08!6;CL:0000404!1.41e-08!6;CL:0002032!5.61e-08!165;CL:0000837!5.61e-08!165;CL:0000766!6.81e-08!76;CL:0002605!1.73e-07!3;CL:0000037!2.91e-07!172;CL:0000566!2.91e-07!172;CL:0000990!3.21e-07!8;CL:0000763!4.92e-07!112;CL:0000049!4.92e-07!112;CL:0002322!5.55e-07!5;CL:0000988!7.80e-07!182;CL:0002319!8.31e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002605;3.27e-28;3!CL:0000039;1.39e-12;7!CL:0000586;1.39e-12;7!CL:0000128;1.91e-12;7!CL:0000126;1.91e-12;7!CL:0000127;1.91e-12;7!CL:0002319;1.24e-11;25!CL:0002322;4.86e-08;5!CL:0000540;7.75e-07;6!CL:0000404;7.75e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.99e-28,3;CL:0000039,1.51e-12,7;CL:0000586,1.51e-12,7;CL:0000128,1.83e-12,7;CL:0000126,1.83e-12,7;CL:0000127,1.83e-12,7;CL:0002453,1.83e-12,7;CL:0002319,1.25e-11,25;CL:0000047,1.50e-10,8;CL:0002322,5.41e-08,5;CL:0000540,8.47e-07,6;CL:0000031,8.47e-07,6;CL:0000404,8.47e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.96e-15;10!UBERON:0005564;3.96e-15;10!CL:0000031;7.75e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:630;1.65e-10;1!DOID:0050177;1.65e-10;1!DOID:0050427;1.65e-10;1!DOID:3095;1.66e-10;22!DOID:2994;1.66e-10;22!DOID:6193;3.15e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.43e-10,1;DOID:0050177,1.43e-10,1;DOID:0050427,1.43e-10,1;DOID:3095,1.75e-10,22;DOID:2994,1.75e-10,22;DOID:6193,2.28e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.47e-10!80;UBERON:0002390!8.23e-10!102;UBERON:0003061!8.23e-10!102;UBERON:0002193!9.99e-10!112;UBERON:0001474!1.85e-09!86;UBERON:0002405!1.46e-08!115;UBERON:0004765!1.03e-07!101;UBERON:0001434!1.03e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.47e-11;8!UBERON:0003135;3.45e-08;11!UBERON:0000991;2.75e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.79e-11,8;UBERON:0003135,3.62e-08,11;UBERON:0000991,2.87e-07,21;UBERON:0009196,2.87e-07,21;UBERON:0009117,2.87e-07,21;UBERON:0005564,2.87e-07,21;UBERON:0004176,6.06e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86601178122796,2.87436292653057,2.76193807108566,1.37544130346312,0.903106483949403,0.550975469195755,0,0,0,0,0,0,0,0.142169232487422,0,0,0.601633342410425,0.651032612147555,0,0,0,0,0,0,0.232429036905685,0,0.619412741790207,0.28769239232215,0.256160706529101,0.709446689665756,0.344745680736619,0.645484683583826,0,0,0,0,0,0,0,0.659702600373432,0.199463657621632,0.852449501065388,0,0,0.622822248995575,0.75374599577023,0,0.65156653411535,1.21079900526674,0.368277635987565,0.632924774881769,0,0.637812899895131,0.209658645508376,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0.348259474598534,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21973706129595,0.795178609928912,0.580969714347592,1.14027160516907,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0.891786973732369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,0.670065061337395,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0.185803175125719,0,0.0711418433484141,0,0.199579371432817,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606802608747567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409074730008619,3.07712013652674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0.234264445725339,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54787429224455,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0.343609788497747,0,0,0,0,0,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,1.10031549277787,1.24632101408756,0.674921674654501,0.77380195455795,0.121499113316049,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0.170388021785422,0.339936274560377,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,5.57548137574807,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0.265729680626726,0.327130788511688,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0.150420656698515,0,0,0,0.163771917510097,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,1.74362138052188,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,4.19752854884702,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,3.02799419604189,7.10226217764021,0,2.54972074354954,4.27547848424897,0.36757959813938,5.26485832513988,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,2.8851164307291 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86601178122796,2.87436292653057,2.76193807108566,1.37544130346312,0.903106483949403,0.550975469195755,0,0,0,0,0,0,0,0.142169232487422,0,0,0.601633342410425,0.651032612147555,0,0,0,0,0,0,0.232429036905685,0,0.619412741790207,0.28769239232215,0.256160706529101,0.709446689665756,0.344745680736619,0.645484683583826,0,0,0,0,0,0,0,0.659702600373432,0.199463657621632,0.852449501065388,0,0,0.622822248995575,0.75374599577023,0,0.65156653411535,1.21079900526674,0.368277635987565,0.632924774881769,0,0.637812899895131,0.209658645508376,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0.348259474598534,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21973706129595,0.795178609928912,0.580969714347592,1.14027160516907,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0,0,0,0,0,0.891786973732369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,0,0,0.670065061337395,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0.185803175125719,0,0.0711418433484141,0,0.199579371432817,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606802608747567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409074730008619,3.07712013652674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0.234264445725339,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54787429224455,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0.343609788497747,0,0,0,0,0,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,1.10031549277787,1.24632101408756,0.674921674654501,0.77380195455795,0.121499113316049,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0.170388021785422,0.339936274560377,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,5.57548137574807,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0.265729680626726,0.327130788511688,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0.150420656698515,0,0,0,0.163771917510097,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,1.74362138052188,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,4.19752854884702,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,3.02799419604189,7.10226217764021,0,2.54972074354954,4.27547848424897,0.36757959813938,5.26485832513988,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,2.8851164307291 | ||
|short_description=p@chr1:39568898..39568917,+ | |||
}} | }} |
Latest revision as of 08:00, 28 July 2015
Short description: | p@chr1:39568898..39568917, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:39568898..39568917, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.99e-28 | 3 |
germ line cell | 1.51e-12 | 7 |
germ cell | 1.51e-12 | 7 |
oligodendrocyte | 1.83e-12 | 7 |
macroglial cell | 1.83e-12 | 7 |
astrocyte | 1.83e-12 | 7 |
oligodendrocyte precursor cell | 1.83e-12 | 7 |
neural cell | 1.25e-11 | 25 |
neuronal stem cell | 1.50e-10 | 8 |
embryonic stem cell | 5.41e-08 | 5 |
neuron | 8.47e-07 | 6 |
neuroblast | 8.47e-07 | 6 |
electrically signaling cell | 8.47e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 4.79e-11 | 8 |
male reproductive organ | 3.62e-08 | 11 |
gonad | 2.87e-07 | 21 |
indifferent external genitalia | 2.87e-07 | 21 |
indifferent gonad | 2.87e-07 | 21 |
gonad primordium | 2.87e-07 | 21 |
external genitalia | 6.06e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.43e-10 | 1 |
monogenic disease | 1.43e-10 | 1 |
xeroderma pigmentosum | 1.43e-10 | 1 |
germ cell and embryonal cancer | 1.75e-10 | 22 |
germ cell cancer | 1.75e-10 | 22 |
epithelioid sarcoma | 2.28e-10 | 1 |