FFCP PHASE1:Hg19::chr20:58410917..58410928,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=116154 | |EntrezGene=116154 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15833 | |HGNC=15833 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_ENST00000492611_5end | |association_with_transcript=9bp_to_ENST00000492611_5end | ||
|cluster_id=chr20:58410917..58410928,+ | |||
|coexpression_cluster_id=C254 | |coexpression_cluster_id=C254 | ||
|description=CAGE_peak_12_at_PHACTR3_5end | |description=CAGE_peak_12_at_PHACTR3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002327!1.85e-07!4 | |ontology_enrichment_celltype=CL:0002327!1.85e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002553;3.15e-26;1!CL:0002327;1.80e-07;4 | |ontology_enrichment_celltype_v019=CL:0002553;3.15e-26;1!CL:0002327;1.80e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002553,3.58e-26,1;CL:0002327,1.80e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009847;1.01e-09;3!UBERON:0003353;1.01e-09;3 | |ontology_enrichment_development_v019=UBERON:0009847;1.01e-09;3!UBERON:0003353;1.01e-09;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3111;7.62e-26;1!DOID:3603;7.62e-26;1!DOID:1324;1.37e-07;15!DOID:5409;1.80e-07;4!DOID:0050615;3.61e-07;16 | |ontology_enrichment_disease_v019=DOID:3111;7.62e-26;1!DOID:3603;7.62e-26;1!DOID:1324;1.37e-07;15!DOID:5409;1.80e-07;4!DOID:0050615;3.61e-07;16 | ||
|ontology_enrichment_disease_v019_2=DOID:3111,1.26e-25,1;DOID:3603,1.26e-25,1;DOID:1324,1.35e-07,15;DOID:5409,1.69e-07,4;DOID:0050615,3.55e-07,16 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000007;8.49e-50;2!UBERON:0003296;1.62e-25;4!UBERON:0010133;1.62e-25;4!UBERON:0001894;4.69e-15;7!UBERON:0001954;7.77e-14;2!UBERON:0003022;7.77e-14;2!UBERON:0002421;7.77e-14;2!UBERON:0002600;7.77e-14;2!UBERON:0001911;1.80e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000007;8.49e-50;2!UBERON:0003296;1.62e-25;4!UBERON:0010133;1.62e-25;4!UBERON:0001894;4.69e-15;7!UBERON:0001954;7.77e-14;2!UBERON:0003022;7.77e-14;2!UBERON:0002421;7.77e-14;2!UBERON:0002600;7.77e-14;2!UBERON:0001911;1.80e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,6.61e-50,2;UBERON:0003296,1.43e-25,4;UBERON:0010133,1.43e-25,4;UBERON:0001894,4.37e-15,7;UBERON:0006222,4.37e-15,7;UBERON:0001954,7.30e-14,2;UBERON:0003022,7.30e-14,2;UBERON:0002421,7.30e-14,2;UBERON:0002600,7.30e-14,2;UBERON:0005153,3.35e-11,37;UBERON:0005157,6.62e-09,47;UBERON:0001911,1.80e-07,4;UBERON:0005333,1.80e-07,4;UBERON:0008425,1.80e-07,4;UBERON:0005311,1.80e-07,4;UBERON:0002530,3.80e-07,59 | |||
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| ||
|short_description=p12@PHACTR3 | |short_description=p12@PHACTR3 | ||
}} | }} |
Latest revision as of 08:03, 17 September 2015
Short description: | p12@PHACTR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PHACTR3_5end |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | 9bp_to_ENST00000492611_5end |
EntrezGene: | PHACTR3 |
HGNC: | 15833 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 3.58e-26 | 1 |
mammary gland epithelial cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 6.61e-50 | 2 |
gland of diencephalon | 1.43e-25 | 4 |
neuroendocrine gland | 1.43e-25 | 4 |
diencephalon | 4.37e-15 | 7 |
future diencephalon | 4.37e-15 | 7 |
Ammon's horn | 7.30e-14 | 2 |
lobe parts of cerebral cortex | 7.30e-14 | 2 |
hippocampal formation | 7.30e-14 | 2 |
limbic lobe | 7.30e-14 | 2 |
epithelial bud | 3.35e-11 | 37 |
epithelial fold | 6.62e-09 | 47 |
mammary gland | 1.80e-07 | 4 |
mammary bud | 1.80e-07 | 4 |
mammary ridge | 1.80e-07 | 4 |
mammary placode | 1.80e-07 | 4 |
gland | 3.80e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.26e-25 | 1 |
mucinous cystadenocarcinoma | 1.26e-25 | 1 |
lung cancer | 1.35e-07 | 15 |
lung small cell carcinoma | 1.69e-07 | 4 |
respiratory system cancer | 3.55e-07 | 16 |