FFCP PHASE1:Hg19::chr17:8059638..8059683,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5187 | |EntrezGene=5187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8845 | |HGNC=8845 | ||
|TSSclassifier=strong | |||
|UniProt=B4DI49 | |UniProt=B4DI49 | ||
|association_with_transcript=0bp_to_ENST00000354903,uc010vur.1_5end | |association_with_transcript=0bp_to_ENST00000354903,uc010vur.1_5end | ||
|cluster_id=chr17:8059638..8059683,- | |||
|coexpression_cluster_id=C2446 | |coexpression_cluster_id=C2446 | ||
|description=CAGE_peak_1_at_PER1_5end | |description=CAGE_peak_1_at_PER1_5end | ||
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|ontology_enrichment_celltype=CL:0000738!5.00e-13!140;CL:0002057!9.51e-10!42;CL:0002031!1.17e-08!124;CL:0000860!2.24e-08!45;CL:0002087!2.22e-07!119;CL:0000766!3.53e-07!76;CL:0000791!3.86e-07!18;CL:0000789!3.86e-07!18;CL:0002420!3.86e-07!18;CL:0002419!3.86e-07!18;CL:0000790!3.86e-07!18 | |ontology_enrichment_celltype=CL:0000738!5.00e-13!140;CL:0002057!9.51e-10!42;CL:0002031!1.17e-08!124;CL:0000860!2.24e-08!45;CL:0002087!2.22e-07!119;CL:0000766!3.53e-07!76;CL:0000791!3.86e-07!18;CL:0000789!3.86e-07!18;CL:0002420!3.86e-07!18;CL:0002419!3.86e-07!18;CL:0000790!3.86e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.96e-07;18!CL:0000789;3.96e-07;18!CL:0002419;3.96e-07;18 | |ontology_enrichment_celltype_v019=CL:0000791;3.96e-07;18!CL:0000789;3.96e-07;18!CL:0002419;3.96e-07;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.40e-14,136;CL:0000860,9.45e-10,42;CL:0002057,9.45e-10,42;CL:0002031,1.04e-09,120;CL:0000766,1.77e-08,72;CL:0002087,2.28e-08,115;CL:0000791,3.84e-07,18;CL:0000789,3.84e-07,18;CL:0002420,3.84e-07,18;CL:0002419,3.84e-07,18;CL:0000790,3.84e-07,18;CL:0000473,5.82e-07,48;CL:0000234,5.82e-07,48 | |||
|ontology_enrichment_development_v019=CL:0002057;3.55e-07;42!CL:0000790;3.96e-07;18 | |ontology_enrichment_development_v019=CL:0002057;3.55e-07;42!CL:0000790;3.96e-07;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.45e-31!115;UBERON:0002390!1.01e-07!102;UBERON:0003061!1.01e-07!102;UBERON:0001049!1.43e-07!57;UBERON:0005068!1.43e-07!57;UBERON:0006241!1.43e-07!57;UBERON:0007135!1.43e-07!57 | |ontology_enrichment_uberon=UBERON:0007023!8.45e-31!115;UBERON:0002390!1.01e-07!102;UBERON:0003061!1.01e-07!102;UBERON:0001049!1.43e-07!57;UBERON:0005068!1.43e-07!57;UBERON:0006241!1.43e-07!57;UBERON:0007135!1.43e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.39e-08;114 | |ontology_enrichment_uberon_v019=UBERON:0007023;2.39e-08;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.18e-30,114;UBERON:0002390,7.46e-09,98;UBERON:0003061,7.46e-09,98;UBERON:0002193,1.42e-07,108;UBERON:0001049,3.13e-07,56;UBERON:0005068,3.13e-07,56;UBERON:0006241,3.13e-07,56;UBERON:0007135,3.13e-07,56 | |||
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| ||
|short_description=p1@PER1 | |short_description=p1@PER1 | ||
}} | }} |
Latest revision as of 13:20, 18 September 2015
Short description: | p1@PER1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PER1_5end |
Coexpression cluster: | C2446_Mast_CD4_CD8_CD19_Natural_Neutrophils_Peripheral |
Association with transcript: | 0bp_to_ENST00000354903, uc010vur.1_5end |
EntrezGene: | PER1 |
HGNC: | 8845 |
UniProt: | B4DI49 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.40e-14 | 136 |
classical monocyte | 9.45e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.45e-10 | 42 |
hematopoietic lineage restricted progenitor cell | 1.04e-09 | 120 |
myeloid leukocyte | 1.77e-08 | 72 |
nongranular leukocyte | 2.28e-08 | 115 |
mature alpha-beta T cell | 3.84e-07 | 18 |
alpha-beta T cell | 3.84e-07 | 18 |
immature T cell | 3.84e-07 | 18 |
mature T cell | 3.84e-07 | 18 |
immature alpha-beta T cell | 3.84e-07 | 18 |
defensive cell | 5.82e-07 | 48 |
phagocyte | 5.82e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.18e-30 | 114 |
hematopoietic system | 7.46e-09 | 98 |
blood island | 7.46e-09 | 98 |
hemolymphoid system | 1.42e-07 | 108 |
neural tube | 3.13e-07 | 56 |
neural rod | 3.13e-07 | 56 |
future spinal cord | 3.13e-07 | 56 |
neural keel | 3.13e-07 | 56 |