FFCP PHASE1:Hg19::chr11:1892102..1892126,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4046 | |EntrezGene=4046 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6707 | |HGNC=6707 | ||
|TSSclassifier=strong | |||
|UniProt=E9PBD8 | |UniProt=E9PBD8 | ||
|association_with_transcript=0bp_to_ENST00000417766_5end | |association_with_transcript=0bp_to_ENST00000417766_5end | ||
|cluster_id=chr11:1892102..1892126,+ | |||
|coexpression_cluster_id=C3126 | |coexpression_cluster_id=C3126 | ||
|description=CAGE_peak_10_at_LSP1_5end | |description=CAGE_peak_10_at_LSP1_5end | ||
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|ontology_enrichment_celltype=CL:0000153!7.58e-10!9;CL:0000447!7.58e-10!9;CL:0000667!4.26e-08!6;CL:0000058!4.26e-08!6;CL:0000138!4.26e-08!6;CL:0000515!4.56e-08!4;CL:0000188!1.12e-07!9 | |ontology_enrichment_celltype=CL:0000153!7.58e-10!9;CL:0000447!7.58e-10!9;CL:0000667!4.26e-08!6;CL:0000058!4.26e-08!6;CL:0000138!4.26e-08!6;CL:0000515!4.56e-08!4;CL:0000188!1.12e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.57e-22;9!CL:0000447;2.57e-22;9!CL:0000138;1.12e-17;6!CL:0000056;1.02e-16;4!CL:0000135;1.22e-13;3!CL:0000388;1.22e-13;3!CL:0000499;2.77e-13;28!CL:0002564;5.43e-13;3!CL:0000327;5.56e-13;15!CL:0000515;8.68e-13;3!CL:0002602;4.64e-10;2!CL:0000680;1.37e-09;7 | |ontology_enrichment_celltype_v019=CL:0000153;2.57e-22;9!CL:0000447;2.57e-22;9!CL:0000138;1.12e-17;6!CL:0000056;1.02e-16;4!CL:0000135;1.22e-13;3!CL:0000388;1.22e-13;3!CL:0000499;2.77e-13;28!CL:0002564;5.43e-13;3!CL:0000327;5.56e-13;15!CL:0000515;8.68e-13;3!CL:0002602;4.64e-10;2!CL:0000680;1.37e-09;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.02e-22,9;CL:0000447,3.02e-22,9;CL:0000058,1.33e-17,6;CL:0000138,1.33e-17,6;CL:0000515,6.28e-17,4;CL:0000135,1.20e-13,3;CL:0000388,1.20e-13,3;CL:0000499,2.95e-13,28;CL:0000327,6.10e-13,15;CL:0002564,7.70e-13,3;CL:0002602,4.65e-10,2;CL:0002540,9.27e-07,6;CL:0002092,9.99e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000515;1.02e-16;4 | |ontology_enrichment_development_v019=CL:0000515;1.02e-16;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.18e-16!115;UBERON:0000153!3.54e-09!129;UBERON:0007811!3.54e-09!129;UBERON:0003075!5.04e-09!86;UBERON:0007284!5.04e-09!86;UBERON:0000033!1.15e-08!123;UBERON:0002346!2.78e-08!90;UBERON:0001049!1.10e-07!57;UBERON:0005068!1.10e-07!57;UBERON:0006241!1.10e-07!57;UBERON:0007135!1.10e-07!57;UBERON:0003056!2.52e-07!61;UBERON:0002616!3.01e-07!59;UBERON:0004121!5.35e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!1.18e-16!115;UBERON:0000153!3.54e-09!129;UBERON:0007811!3.54e-09!129;UBERON:0003075!5.04e-09!86;UBERON:0007284!5.04e-09!86;UBERON:0000033!1.15e-08!123;UBERON:0002346!2.78e-08!90;UBERON:0001049!1.10e-07!57;UBERON:0005068!1.10e-07!57;UBERON:0006241!1.10e-07!57;UBERON:0007135!1.10e-07!57;UBERON:0003056!2.52e-07!61;UBERON:0002616!3.01e-07!59;UBERON:0004121!5.35e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.96e-25;8!UBERON:0000982;2.96e-25;8!UBERON:0004770;2.96e-25;8!UBERON:0011135;2.70e-21;5!UBERON:0002216;2.70e-21;5!UBERON:0011134;2.70e-21;5!UBERON:0002209;2.70e-21;5!UBERON:0002213;2.70e-21;5!UBERON:0007844;2.70e-21;5!UBERON:0011138;2.70e-21;5!UBERON:0001130;2.70e-21;5!UBERON:0001066;2.70e-21;5!UBERON:0001468;2.70e-21;5!UBERON:0007846;1.22e-13;3!UBERON:0000043;1.22e-13;3!UBERON:0007845;1.22e-13;3!UBERON:0002242;5.43e-13;3!UBERON:0001134;2.04e-11;16!UBERON:0002036;2.04e-11;16!UBERON:0004765;2.22e-11;26!UBERON:0002204;1.44e-10;70!UBERON:0006444;4.64e-10;2!UBERON:0001995;4.64e-10;2!UBERON:0004715;4.64e-10;2!UBERON:0001434;4.65e-09;36!UBERON:0002418;5.87e-07;3!UBERON:0004755;5.87e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0004905;2.96e-25;8!UBERON:0000982;2.96e-25;8!UBERON:0004770;2.96e-25;8!UBERON:0011135;2.70e-21;5!UBERON:0002216;2.70e-21;5!UBERON:0011134;2.70e-21;5!UBERON:0002209;2.70e-21;5!UBERON:0002213;2.70e-21;5!UBERON:0007844;2.70e-21;5!UBERON:0011138;2.70e-21;5!UBERON:0001130;2.70e-21;5!UBERON:0001066;2.70e-21;5!UBERON:0001468;2.70e-21;5!UBERON:0007846;1.22e-13;3!UBERON:0000043;1.22e-13;3!UBERON:0007845;1.22e-13;3!UBERON:0002242;5.43e-13;3!UBERON:0001134;2.04e-11;16!UBERON:0002036;2.04e-11;16!UBERON:0004765;2.22e-11;26!UBERON:0002204;1.44e-10;70!UBERON:0006444;4.64e-10;2!UBERON:0001995;4.64e-10;2!UBERON:0004715;4.64e-10;2!UBERON:0001434;4.65e-09;36!UBERON:0002418;5.87e-07;3!UBERON:0004755;5.87e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,4.04e-25,8;UBERON:0000982,4.04e-25,8;UBERON:0004770,4.04e-25,8;UBERON:0011135,3.86e-21,5;UBERON:0002216,3.86e-21,5;UBERON:0011134,3.86e-21,5;UBERON:0002209,3.86e-21,5;UBERON:0002213,3.86e-21,5;UBERON:0005856,3.86e-21,5;UBERON:0005866,3.86e-21,5;UBERON:0005863,3.86e-21,5;UBERON:0007844,3.86e-21,5;UBERON:0011138,3.86e-21,5;UBERON:0001130,3.86e-21,5;UBERON:0001066,3.86e-21,5;UBERON:0001468,3.86e-21,5;UBERON:0007846,1.20e-13,3;UBERON:0000043,1.20e-13,3;UBERON:0007845,1.20e-13,3;UBERON:0002242,7.70e-13,3;UBERON:0003068,7.70e-13,3;UBERON:0002328,7.70e-13,3;UBERON:0004880,7.70e-13,3;UBERON:0006444,4.65e-10,2;UBERON:0001995,4.65e-10,2;UBERON:0004715,4.65e-10,2;UBERON:0002418,5.88e-07,3;UBERON:0004755,5.88e-07,3 | |||
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| ||
|short_description=p10@LSP1 | |short_description=p10@LSP1 | ||
}} | }} |
Latest revision as of 04:10, 17 September 2015
Short description: | p10@LSP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LSP1_5end |
Coexpression cluster: | C3126_Anulus_Myoblast_tenocyte_Mesenchymal_Nucleus_immature_Chondrocyte |
Association with transcript: | 0bp_to_ENST00000417766_5end |
EntrezGene: | LSP1 |
HGNC: | 6707 |
UniProt: | E9PBD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.02e-22 | 9 |
carbohydrate secreting cell | 3.02e-22 | 9 |
chondroblast | 1.33e-17 | 6 |
chondrocyte | 1.33e-17 | 6 |
skeletal muscle myoblast | 6.28e-17 | 4 |
fibrocyte | 1.20e-13 | 3 |
tendon cell | 1.20e-13 | 3 |
stromal cell | 2.95e-13 | 28 |
extracellular matrix secreting cell | 6.10e-13 | 15 |
nucleus pulposus cell of intervertebral disc | 7.70e-13 | 3 |
annulus pulposus cell | 4.65e-10 | 2 |
mesenchymal stem cell of the bone marrow | 9.27e-07 | 6 |
bone marrow cell | 9.99e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
articulation | 4.04e-25 | 8 |
skeletal joint | 4.04e-25 | 8 |
articular system | 4.04e-25 | 8 |
intervertebral cartilage | 3.86e-21 | 5 |
symphysis | 3.86e-21 | 5 |
nonsynovial joint | 3.86e-21 | 5 |
fibrous joint | 3.86e-21 | 5 |
cartilaginous joint | 3.86e-21 | 5 |
developing mesenchymal condensation | 3.86e-21 | 5 |
pre-cartilage condensation | 3.86e-21 | 5 |
cartilaginous condensation | 3.86e-21 | 5 |
cartilage element | 3.86e-21 | 5 |
post-cranial axial skeletal system | 3.86e-21 | 5 |
vertebral column | 3.86e-21 | 5 |
intervertebral disk | 3.86e-21 | 5 |
intervertebral joint | 3.86e-21 | 5 |
dense regular connective tissue | 1.20e-13 | 3 |
tendon | 1.20e-13 | 3 |
regular connective tissue | 1.20e-13 | 3 |
nucleus pulposus | 7.70e-13 | 3 |
axial mesoderm | 7.70e-13 | 3 |
notochord | 7.70e-13 | 3 |
chordamesoderm | 7.70e-13 | 3 |
annulus fibrosus | 4.65e-10 | 2 |
fibrocartilage | 4.65e-10 | 2 |
annulus fibrosus disci intervertebralis | 4.65e-10 | 2 |
cartilage tissue | 5.88e-07 | 3 |
skeletal tissue | 5.88e-07 | 3 |