FFCP PHASE1:Hg19::chr12:122380361..122380372,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:122380361..122380372,+ | |||
|coexpression_cluster_id=C406 | |coexpression_cluster_id=C406 | ||
|description=CAGE_peak_at_chr12:122380361..122380372,+ | |description=CAGE_peak_at_chr12:122380361..122380372,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002159!1.12e-15!13;CL:0002076!2.17e-13!43;CL:0002368!1.42e-11!13;CL:0002166!1.96e-11!3;CL:0002621!4.86e-11!3;CL:0002328!2.05e-10!3;CL:0002582!1.27e-09!3;CL:0002202!5.90e-09!9;CL:0002632!5.90e-09!9;CL:0000223!8.27e-09!59;CL:0000317!5.41e-08!2;CL:1000448!5.41e-08!2;CL:0002308!5.41e-08!2;CL:0002140!5.41e-08!2;CL:0000220!6.16e-08!246;CL:0002321!8.28e-08!248;CL:0002195!1.28e-07!2;CL:0002571!1.28e-07!2;CL:0000362!7.65e-07!8 | |ontology_enrichment_celltype=CL:0002159!1.12e-15!13;CL:0002076!2.17e-13!43;CL:0002368!1.42e-11!13;CL:0002166!1.96e-11!3;CL:0002621!4.86e-11!3;CL:0002328!2.05e-10!3;CL:0002582!1.27e-09!3;CL:0002202!5.90e-09!9;CL:0002632!5.90e-09!9;CL:0000223!8.27e-09!59;CL:0000317!5.41e-08!2;CL:1000448!5.41e-08!2;CL:0002308!5.41e-08!2;CL:0002140!5.41e-08!2;CL:0000220!6.16e-08!246;CL:0002321!8.28e-08!248;CL:0002195!1.28e-07!2;CL:0002571!1.28e-07!2;CL:0000362!7.65e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002166;1.59e-21;3!CL:0000632;3.63e-21;3!CL:0002159;1.42e-10;14!CL:0000317;4.01e-09;2!CL:1000448;4.01e-09;2!CL:0002308;4.01e-09;2!CL:0002140;4.01e-09;2 | |ontology_enrichment_celltype_v019=CL:0002166;1.59e-21;3!CL:0000632;3.63e-21;3!CL:0002159;1.42e-10;14!CL:0000317;4.01e-09;2!CL:1000448;4.01e-09;2!CL:0002308;4.01e-09;2!CL:0002140;4.01e-09;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002166,1.05e-21,3;CL:0000632,3.63e-21,3;CL:0002159,1.21e-10,14;CL:0000317,3.71e-09,2;CL:1000448,3.71e-09,2;CL:0002308,3.71e-09,2;CL:0002140,3.71e-09,2;CL:0000057,6.33e-07,76 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4231!4.12e-08!2;DOID:1907!4.12e-08!2 | |ontology_enrichment_disease=DOID:4231!4.12e-08!2;DOID:1907!4.12e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4231;3.46e-31;2!DOID:1907;3.46e-31;2!DOID:3571;1.65e-16;1!DOID:201;4.37e-11;6!DOID:0060100;4.37e-11;6!DOID:3350;6.42e-09;2 | |ontology_enrichment_disease_v019=DOID:4231;3.46e-31;2!DOID:1907;3.46e-31;2!DOID:3571;1.65e-16;1!DOID:201;4.37e-11;6!DOID:0060100;4.37e-11;6!DOID:3350;6.42e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4231,3.46e-31,2;DOID:1907,3.46e-31,2;DOID:3571,2.63e-16,1;DOID:201,4.37e-11,6;DOID:0060100,4.37e-11,6;DOID:3350,8.09e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001949!4.86e-11!3;UBERON:0004815!2.05e-10!3;UBERON:0002031!2.05e-10!3;UBERON:0001828!2.19e-10!8;UBERON:0002090!1.31e-09!6;UBERON:0001708!1.16e-08!4;UBERON:0001704!1.16e-08!4;UBERON:0003102!1.31e-08!95;UBERON:0002419!5.41e-08!2;UBERON:0007771!5.41e-08!2;UBERON:0003297!5.41e-08!2;UBERON:0001821!5.41e-08!2;UBERON:0003487!5.41e-08!2;UBERON:0001820!5.41e-08!2;UBERON:0005089!5.41e-08!2;UBERON:0005088!5.41e-08!2;UBERON:0002185!6.59e-08!4;UBERON:0000475!9.31e-08!365;UBERON:0000165!1.31e-07!28;UBERON:0000930!1.31e-07!28 | |ontology_enrichment_uberon=UBERON:0001949!4.86e-11!3;UBERON:0004815!2.05e-10!3;UBERON:0002031!2.05e-10!3;UBERON:0001828!2.19e-10!8;UBERON:0002090!1.31e-09!6;UBERON:0001708!1.16e-08!4;UBERON:0001704!1.16e-08!4;UBERON:0003102!1.31e-08!95;UBERON:0002419!5.41e-08!2;UBERON:0007771!5.41e-08!2;UBERON:0003297!5.41e-08!2;UBERON:0001821!5.41e-08!2;UBERON:0003487!5.41e-08!2;UBERON:0001820!5.41e-08!2;UBERON:0005089!5.41e-08!2;UBERON:0005088!5.41e-08!2;UBERON:0002185!6.59e-08!4;UBERON:0000475!9.31e-08!365;UBERON:0000165!1.31e-07!28;UBERON:0000930!1.31e-07!28 | ||
|ontology_enrichment_uberon_v019=UBERON:0001708;2.09e-16;4!UBERON:0008895;2.09e-16;4!UBERON:0011159;2.52e-13;5!UBERON:0002419;4.01e-09;2!UBERON:0007771;4.01e-09;2!UBERON:0003297;4.01e-09;2!UBERON:0001821;4.01e-09;2!UBERON:0003487;4.01e-09;2!UBERON:0001820;4.01e-09;2!UBERON:0001828;1.53e-08;8 | |ontology_enrichment_uberon_v019=UBERON:0001708;2.09e-16;4!UBERON:0008895;2.09e-16;4!UBERON:0011159;2.52e-13;5!UBERON:0002419;4.01e-09;2!UBERON:0007771;4.01e-09;2!UBERON:0003297;4.01e-09;2!UBERON:0001821;4.01e-09;2!UBERON:0003487;4.01e-09;2!UBERON:0001820;4.01e-09;2!UBERON:0001828;1.53e-08;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,1.53e-16,4;UBERON:0008895,1.53e-16,4;UBERON:0011159,1.97e-13,5;UBERON:0010188,2.36e-11,6;UBERON:0002539,2.36e-11,6;UBERON:0008816,2.36e-11,6;UBERON:0002419,3.71e-09,2;UBERON:0007771,3.71e-09,2;UBERON:0003297,3.71e-09,2;UBERON:0001821,3.71e-09,2;UBERON:0003487,3.71e-09,2;UBERON:0001820,3.71e-09,2;UBERON:0005089,3.71e-09,2;UBERON:0005088,3.71e-09,2;UBERON:0001828,1.59e-08,8;UBERON:0008814,2.22e-08,18;UBERON:0003102,4.00e-07,99 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0.662794751455832,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,1.05927344650575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403008392910561,0,0.773043412653187,0.818238361772504,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0.548751427043128,0,0.301586917234893,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,5.20744597416465,1.98485136139341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0.116210378459959,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,0.650060246036521,0,0,0,0,0.275673144969061,0.107420244868274,0,0,0,0.330569830721956,0,1.27612712494584,0,0,0.62962469366128,0.6970372701606,0,0,0,0,0,0,0.316379424718726,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0.288666338176536,0,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11486539543521,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435296032902013,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,0,0,0,0.322231671127465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.883445729729405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13503190713367,1.28874165176289,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0.662794751455832,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,1.05927344650575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403008392910561,0,0.773043412653187,0.818238361772504,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0.548751427043128,0,0.301586917234893,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,5.20744597416465,1.98485136139341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0.116210378459959,0,0.601519410909855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,0.650060246036521,0,0,0,0,0.275673144969061,0.107420244868274,0,0,0,0.330569830721956,0,1.27612712494584,0,0,0.62962469366128,0.6970372701606,0,0,0,0,0,0,0.316379424718726,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0.288666338176536,0,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11486539543521,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435296032902013,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,0,0,0,0.322231671127465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.883445729729405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13503190713367,1.28874165176289,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:122380361..122380372,+ | |short_description=p@chr12:122380361..122380372,+ | ||
}} | }} |
Latest revision as of 06:02, 24 July 2015
Short description: | p@chr12:122380361..122380372, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:122380361..122380372, + |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 1.05e-21 | 3 |
hepatic stellate cell | 3.63e-21 | 3 |
general ecto-epithelial cell | 1.21e-10 | 14 |
sebum secreting cell | 3.71e-09 | 2 |
epithelial cell of sweat gland | 3.71e-09 | 2 |
epithelial cell of skin gland | 3.71e-09 | 2 |
acinar cell of sebaceous gland | 3.71e-09 | 2 |
fibroblast | 6.33e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 1.53e-16 | 4 |
splanchnocranium | 1.53e-16 | 4 |
primary subdivision of cranial skeletal system | 1.97e-13 | 5 |
protuberance | 2.36e-11 | 6 |
pharyngeal arch | 2.36e-11 | 6 |
embryonic head | 2.36e-11 | 6 |
skin gland | 3.71e-09 | 2 |
epidermis gland | 3.71e-09 | 2 |
gland of integumental system | 3.71e-09 | 2 |
sebaceous gland | 3.71e-09 | 2 |
skin sebaceous gland | 3.71e-09 | 2 |
sweat gland | 3.71e-09 | 2 |
sweat gland placode | 3.71e-09 | 2 |
sebaceous gland placode | 3.71e-09 | 2 |
gingiva | 1.59e-08 | 8 |
pharyngeal arch system | 2.22e-08 | 18 |
surface structure | 4.00e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
histiocytoma | 3.46e-31 | 2 |
malignant fibroxanthoma | 3.46e-31 | 2 |
liver cancer | 2.63e-16 | 1 |
connective tissue cancer | 4.37e-11 | 6 |
musculoskeletal system cancer | 4.37e-11 | 6 |
mesenchymal cell neoplasm | 8.09e-09 | 2 |