FFCP PHASE1:Hg19::chr19:13238214..13238217,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:13238214..13238217,+ | |||
|description=CAGE_peak_at_chr19:13238214..13238217,+ | |description=CAGE_peak_at_chr19:13238214..13238217,+ | ||
|id=chr19:13238214..13238217,+ | |id=chr19:13238214..13238217,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002363;8.34e-18;2!CL:0000083;1.38e-09;4 | |ontology_enrichment_celltype_v019=CL:0002363;8.34e-18;2!CL:0000083;1.38e-09;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002363,1.07e-17,2;CL:0000008,1.07e-17,2;CL:0000083,1.44e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000008;8.34e-18;2 | |ontology_enrichment_development_v019=CL:0000008;8.34e-18;2 | ||
|ontology_enrichment_disease=DOID:162!4.88e-09!235;DOID:14566!6.10e-09!239;DOID:0050687!1.55e-08!143 | |ontology_enrichment_disease=DOID:162!4.88e-09!235;DOID:14566!6.10e-09!239;DOID:0050687!1.55e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:1799;4.27e-34;1!DOID:10165;4.27e-34;1!DOID:1798;4.27e-34;1!DOID:1793;1.38e-09;4!DOID:170;8.25e-07;6 | |ontology_enrichment_disease_v019=DOID:1799;4.27e-34;1!DOID:10165;4.27e-34;1!DOID:1798;4.27e-34;1!DOID:1793;1.38e-09;4!DOID:170;8.25e-07;6 | ||
|ontology_enrichment_disease_v019_2=DOID:1799,5.05e-34,1;DOID:10165,5.05e-34,1;DOID:1798,5.05e-34,1;DOID:1793,1.44e-09,4;DOID:170,8.48e-07,6 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;8.34e-18;2!UBERON:0001777;8.34e-18;2!UBERON:0001896;2.45e-12;3!UBERON:0005290;2.45e-12;3!UBERON:0003891;1.38e-09;4!UBERON:0000964;1.38e-09;4!UBERON:0010409;1.38e-09;4!UBERON:0002298;8.25e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0003566;8.34e-18;2!UBERON:0001777;8.34e-18;2!UBERON:0001896;2.45e-12;3!UBERON:0005290;2.45e-12;3!UBERON:0003891;1.38e-09;4!UBERON:0000964;1.38e-09;4!UBERON:0010409;1.38e-09;4!UBERON:0002298;8.25e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,1.07e-17,2;UBERON:0001777,1.07e-17,2;UBERON:0001896,2.31e-12,3;UBERON:0005290,2.31e-12,3;UBERON:0010096,2.31e-12,3;UBERON:0003891,1.57e-09,4;UBERON:0000964,1.57e-09,4;UBERON:0010409,1.57e-09,4;UBERON:0004348,1.57e-09,4;UBERON:0005427,1.57e-09,4;UBERON:0002298,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.527533956456907,0.123766352960047,0,0,0,0,0,0,0,0,0.572471974262113,0,0.125542639594803,0.229240217243854,0.410502947249729,0.0787107813136792,0,0,0.154816123316076,0,0,0,0.309868802321207,0.426507697462265,0,0,0.401088894940283,0,0.223915474239924,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0.473447805734733,0,0,0,0,0,0.25618263945135,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0.34362744548263,0.506039384039006,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0.443458794925128,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0.234321431833797,0.312160076830321,0,0,0.23486899728753,0.323745888736263,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0,0.150238058906597,0,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0,0,0,0.10075209822764,0,0.193260853163297,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0.354920400119532,0,0.482022059766964,0.220587945464788,0.217879444092406,0.71181185733329,0.134831308160164,0.588664395376038,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,0,0.201057944823262,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0,0.288732895522148,0,0.570762456703795,0,0,0,0,0,0.93733833986777,0,0,0.358234090811393,0,0,0,0.088048434013226,0,0.144119953416961,0,0.317489471460845,0,0,0,0,0,0.285826432630578,0.112131084345361,0.43596006883328,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0.153461973288062,0,0.256278298511402,0,0.321707842287215,0,0,0,0.0821271560138091,0,0,0.362578348774867,0,0.0920809889358963,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.255679882248303,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0.731140468893853,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.213648142254946,0,0,0.371606350251437,0,0.284567373393656,0,0.399158742865633,0,0,0,0,0,0.313359791546046,0,0,0.321176150207399,0.201799707191048,0.425846237690326,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0,0.121360521749513,0.445773537109913,0,0,0.296964680832639,0,0,0.281338832821026,0,0.329607748453519,0,0.19924798825107,0,0,0,0.123084805461069,0.311039587661807,0,0,0,0,0,0,0,0,0,0.260427761085233,0.262379999988587,0,0.568967241427498,0,0.236387681767936,1.03423011972439,0,0,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0,0,0.139423744278603,0,0.113942055847001,0,0.179515288819544,0,0,0,0,0,0.470940769185074,0.166211681900156,0,0.392125068635479,0,0.189753732724185,0.158936578980379,0,0,0.141353071433941,0.216388639742091,0.995261931078505,0,0,0,0.86494757262552,0.313265848516366,0.202203398942031,0,0,0.182454789215666,0,0.728341138602278,0,0,0.30607276163049,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0.17472666824203,0,0.677294319023596,0.219267951258557,1.14961639874493,0,0.0882561266915003,0,0.411125773940253,0,0.0633107959558787,0.586654148204409,0.160317640503067,0.213452994739353,0,0.432271251462318,0.229073192331831,0,0.14405479798815,0,0.235694034616795,0,0.209205692624666,0.101998217636322,0,0,0.273810757783986,0,0,0,0,0,0.717873024576814,0.199679000498991,0,0,0,0.360299883542404,0,0.0787831823072236,0.0824158583811665,0.202210631562555,0.196854963029498,0,0,0.272406812223151,0,0.137539436597234,0.83088067605837,0,0,0.182248669974074,0,0.157611414598396,0.209818352539992,0.105600336519406,0.179287339332845,0.575745591958336,0,0,0.25426853765475,0,0,0,0,0.328370082997356,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,1.14681839138014,0.443716206147409,0.18628920882415,0,0.249960815924213,0,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0.889811221596536,0,0.302461847526478,0.15543720058278,0.147855149989634,0.159296767163702,0,0,0,0.265841714557995,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0.214441591374926,0,0,0.231522474323834,0.244736704506468,0.358177682162975,0,0.438568099157414,0.176689145945881,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0.389720617678777,0,0.163565394255844,0,0,0,0.19998739585493,0.106691729694141,0.172214979660816,0,0.368211900503681,0,0,0,0.107824811396682,0.471797825567689,0.327628914576042,0.678930119816101,0.212574920101683,0.247871528518004,0,0,0.0788617450012534,0,0,0,0.385375350578757,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,1.04762677792569,0.163771917510097,0,0.0675375846183947,0.781078098613847,0,0.253663240775627,0,0,0.496211178389294,0,0,0,0.672567444437648,0,0,0,0,0,0.203909198930495,0.131545547125698,0,0.111231401892069,0.156986185701028,0.157115589916002,0.280272163313789,0,0,0,0,0,0.581207126840626,0.173858272302579,0,0,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0,0.4582137370881,0,0,0.111855431797792,0.098150233615243,0.487671699929078,0,0,0,0,0,0.596852325484105,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0.891139200981258,0,0,0.0939839179798536,0,0.299823467774787,0,0,0.160482733378337,0,0,0.143339583151451,0.157771562193185,0.271965960763659,0,0,0,0,0,0.252332849670158,0.437062287854782,0.253397002022874,0.815910637935854,0,0.459474497674225,0.250707539292375,0.0757786982182394,0,0,0.310298987585686,0,0.476128862927481,0.0645889098360061,0.186224142887574,0.224263725161227,0,0.202117188958219,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.527533956456907,0.123766352960047,0,0,0,0,0,0,0,0,0.572471974262113,0,0.125542639594803,0.229240217243854,0.410502947249729,0.0787107813136792,0,0,0.154816123316076,0,0,0,0.309868802321207,0.426507697462265,0,0,0.401088894940283,0,0.223915474239924,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0.473447805734733,0,0,0,0,0,0.25618263945135,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0.34362744548263,0.506039384039006,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0.443458794925128,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0.234321431833797,0.312160076830321,0,0,0.23486899728753,0.323745888736263,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0,0.150238058906597,0,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0,0,0,0.10075209822764,0,0.193260853163297,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0.354920400119532,0,0.482022059766964,0.220587945464788,0.217879444092406,0.71181185733329,0.134831308160164,0.588664395376038,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,0,0.201057944823262,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0,0.288732895522148,0,0.570762456703795,0,0,0,0,0,0.93733833986777,0,0,0.358234090811393,0,0,0,0.088048434013226,0,0.144119953416961,0,0.317489471460845,0,0,0,0,0,0.285826432630578,0.112131084345361,0.43596006883328,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0.153461973288062,0,0.256278298511402,0,0.321707842287215,0,0,0,0.0821271560138091,0,0,0.362578348774867,0,0.0920809889358963,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.255679882248303,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0.731140468893853,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.213648142254946,0,0,0.371606350251437,0,0.284567373393656,0,0.399158742865633,0,0,0,0,0,0.313359791546046,0,0,0.321176150207399,0.201799707191048,0.425846237690326,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0,0.121360521749513,0.445773537109913,0,0,0.296964680832639,0,0,0.281338832821026,0,0.329607748453519,0,0.19924798825107,0,0,0,0.123084805461069,0.311039587661807,0,0,0,0,0,0,0,0,0,0.260427761085233,0.262379999988587,0,0.568967241427498,0,0.236387681767936,1.03423011972439,0,0,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0,0,0.139423744278603,0,0.113942055847001,0,0.179515288819544,0,0,0,0,0,0.470940769185074,0.166211681900156,0,0.392125068635479,0,0.189753732724185,0.158936578980379,0,0,0.141353071433941,0.216388639742091,0.995261931078505,0,0,0,0.86494757262552,0.313265848516366,0.202203398942031,0,0,0.182454789215666,0,0.728341138602278,0,0,0.30607276163049,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0.17472666824203,0,0.677294319023596,0.219267951258557,1.14961639874493,0,0.0882561266915003,0,0.411125773940253,0,0.0633107959558787,0.586654148204409,0.160317640503067,0.213452994739353,0,0.432271251462318,0.229073192331831,0,0.14405479798815,0,0.235694034616795,0,0.209205692624666,0.101998217636322,0,0,0.273810757783986,0,0,0,0,0,0.717873024576814,0.199679000498991,0,0,0,0.360299883542404,0,0.0787831823072236,0.0824158583811665,0.202210631562555,0.196854963029498,0,0,0.272406812223151,0,0.137539436597234,0.83088067605837,0,0,0.182248669974074,0,0.157611414598396,0.209818352539992,0.105600336519406,0.179287339332845,0.575745591958336,0,0,0.25426853765475,0,0,0,0,0.328370082997356,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.3755727921195,1.14681839138014,0.443716206147409,0.18628920882415,0,0.249960815924213,0,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0.889811221596536,0,0.302461847526478,0.15543720058278,0.147855149989634,0.159296767163702,0,0,0,0.265841714557995,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0.214441591374926,0,0,0.231522474323834,0.244736704506468,0.358177682162975,0,0.438568099157414,0.176689145945881,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0.389720617678777,0,0.163565394255844,0,0,0,0.19998739585493,0.106691729694141,0.172214979660816,0,0.368211900503681,0,0,0,0.107824811396682,0.471797825567689,0.327628914576042,0.678930119816101,0.212574920101683,0.247871528518004,0,0,0.0788617450012534,0,0,0,0.385375350578757,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0,0,0,0,0,0.20170506870352,0,1.04762677792569,0.163771917510097,0,0.0675375846183947,0.781078098613847,0,0.253663240775627,0,0,0.496211178389294,0,0,0,0.672567444437648,0,0,0,0,0,0.203909198930495,0.131545547125698,0,0.111231401892069,0.156986185701028,0.157115589916002,0.280272163313789,0,0,0,0,0,0.581207126840626,0.173858272302579,0,0,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0,0.4582137370881,0,0,0.111855431797792,0.098150233615243,0.487671699929078,0,0,0,0,0,0.596852325484105,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0.891139200981258,0,0,0.0939839179798536,0,0.299823467774787,0,0,0.160482733378337,0,0,0.143339583151451,0.157771562193185,0.271965960763659,0,0,0,0,0,0.252332849670158,0.437062287854782,0.253397002022874,0.815910637935854,0,0.459474497674225,0.250707539292375,0.0757786982182394,0,0,0.310298987585686,0,0.476128862927481,0.0645889098360061,0.186224142887574,0.224263725161227,0,0.202117188958219,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | ||
|short_description=p@chr19:13238214..13238217,+ | |short_description=p@chr19:13238214..13238217,+ | ||
}} | }} |
Latest revision as of 04:02, 26 July 2015
Short description: | p@chr19:13238214..13238217, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:13238214..13238217, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratocyte | 1.07e-17 | 2 |
migratory cranial neural crest cell | 1.07e-17 | 2 |
epithelial cell of pancreas | 1.44e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 1.07e-17 | 2 |
substantia propria of cornea | 1.07e-17 | 2 |
medulla oblongata | 2.31e-12 | 3 |
myelencephalon | 2.31e-12 | 3 |
future myelencephalon | 2.31e-12 | 3 |
stroma | 1.57e-09 | 4 |
cornea | 1.57e-09 | 4 |
eye surface | 1.57e-09 | 4 |
optic eminence | 1.57e-09 | 4 |
corneal primordium | 1.57e-09 | 4 |
brainstem | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 5.05e-34 | 1 |
endocrine pancreas cancer | 5.05e-34 | 1 |
pancreatic endocrine carcinoma | 5.05e-34 | 1 |
pancreatic cancer | 1.44e-09 | 4 |
endocrine gland cancer | 8.48e-07 | 6 |