FFCP PHASE1:Hg19::chr21:46424452..46424477,-: Difference between revisions
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|id=chr21:46424452..46424477,-
|short_description=p3@LINC00162
|description=CAGE_peak_3_at_LINC00162_5end
|association_with_transcript=164bp_to_ENST00000422199,NR_0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=378825 | |EntrezGene=378825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=19725 | |HGNC=19725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=164bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end | |||
|cluster_id=chr21:46424452..46424477,- | |||
|coexpression_cluster_id=C2636 | |||
|description=CAGE_peak_3_at_LINC00162_5end | |||
|id=chr21:46424452..46424477,- | |||
|ontology_enrichment_celltype=CL:0002150!1.94e-08!3;CL:0000861!1.94e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002327;3.40e-10;4!CL:0000077;1.86e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.88e-12,253;CL:0002327,2.56e-10,4;CL:0000077,1.73e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.61e-14;29 | |||
|ontology_enrichment_disease=DOID:162!2.61e-09!235;DOID:305!6.27e-09!106;DOID:14566!7.06e-09!239;DOID:0050687!1.66e-07!143;DOID:2394!5.15e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.93e-16,235;DOID:14566,1.25e-15,239;DOID:305,6.62e-15,106;DOID:0050687,1.25e-14,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.03e-22!9;UBERON:0001557!1.58e-11!19;UBERON:0002075!2.70e-08!18;UBERON:0008947!1.11e-07!38;UBERON:0003258!1.11e-07!38;UBERON:0002323!5.03e-07!46;UBERON:0004732!7.16e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.25e-40;9!UBERON:0001557;4.25e-40;9!UBERON:0001911;3.40e-10;4!UBERON:0000072;3.47e-10;37!UBERON:0000065;3.57e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.75e-40,9;UBERON:0001557,2.97e-22,19;UBERON:0001911,2.56e-10,4;UBERON:0005333,2.56e-10,4;UBERON:0008425,2.56e-10,4;UBERON:0005311,2.56e-10,4;UBERON:0008947,4.67e-10,38;UBERON:0003258,4.67e-10,38;UBERON:0000072,2.03e-09,47;UBERON:0000065,6.52e-08,54 | |||
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| ||
|short_description=p3@LINC00162 | |||
}} | }} |
Latest revision as of 20:21, 18 September 2015
Short description: | p3@LINC00162 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00162_5end |
Coexpression cluster: | C2636_Hep2_Mammary_cervical_mesenchymal_mesothelioma_giant_pagetoid |
Association with transcript: | 164bp_to_ENST00000422199, NR_024089, uc002zgo.2_5end |
EntrezGene: | LINC00162 |
HGNC: | 19725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.88e-12 | 253 |
mammary gland epithelial cell | 2.56e-10 | 4 |
mesothelial cell | 1.73e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.75e-40 | 9 |
upper respiratory tract | 2.97e-22 | 19 |
mammary gland | 2.56e-10 | 4 |
mammary bud | 2.56e-10 | 4 |
mammary ridge | 2.56e-10 | 4 |
mammary placode | 2.56e-10 | 4 |
respiratory primordium | 4.67e-10 | 38 |
endoderm of foregut | 4.67e-10 | 38 |
segment of respiratory tract | 2.03e-09 | 47 |
respiratory tract | 6.52e-08 | 54 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.93e-16 | 235 |
disease of cellular proliferation | 1.25e-15 | 239 |
carcinoma | 6.62e-15 | 106 |
cell type cancer | 1.25e-14 | 143 |