FFCP PHASE1:Hg19::chr2:28785707..28785729,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:28785707..28785729,+
|short_description=p@chr2:28785707..28785729,+
|description=CAGE_peak_at_chr2:28785707..28785729,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:28785707..28785729,+ | |||
|coexpression_cluster_id=C97 | |||
|description=CAGE_peak_at_chr2:28785707..28785729,+ | |||
|id=chr2:28785707..28785729,+ | |||
|ontology_enrichment_celltype=CL:0002159!2.91e-22!13;CL:0002076!4.98e-19!43;CL:0002368!1.32e-17!13;CL:0000240!2.51e-16!6;CL:0000311!2.51e-16!6;CL:0000079!2.51e-16!6;CL:0000237!2.51e-16!6;CL:0000036!2.51e-16!6;CL:0000357!2.51e-16!6;CL:0000114!2.51e-16!6;CL:0000223!1.12e-14!59;CL:0000312!9.93e-13!5;CL:0002621!1.57e-12!3;CL:0000362!6.56e-12!8;CL:0000066!7.26e-12!254;CL:0002202!1.57e-10!9;CL:0002632!1.57e-10!9;CL:0002077!1.19e-09!33;CL:0002327!2.17e-09!4;CL:0000575!1.80e-08!2;CL:0002251!3.12e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0000240;1.64e-35;6!CL:0000311;1.64e-35;6!CL:0000079;1.64e-35;6!CL:0000237;1.64e-35;6!CL:0000312;2.46e-24;5!CL:0002621;2.12e-18;3!CL:0002159;2.44e-15;14!CL:0002336;8.17e-15;1!CL:0002261;8.17e-15;1!CL:0002170;8.17e-15;1!CL:0002327;3.05e-14;4!CL:0000362;8.03e-14;9!CL:0002251;7.98e-11;20!CL:0002076;3.53e-10;42!CL:0002077;3.36e-09;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000240,2.34e-35,6;CL:0000311,2.34e-35,6;CL:0000079,2.34e-35,6;CL:0000237,2.34e-35,6;CL:0000036,2.34e-35,6;CL:0000357,2.34e-35,6;CL:0000114,2.34e-35,6;CL:0000312,3.68e-24,5;CL:0002621,1.77e-18,3;CL:0002159,2.78e-15,14;CL:0002336,7.13e-15,1;CL:0002261,7.13e-15,1;CL:0002170,7.13e-15,1;CL:0002327,2.41e-14,4;CL:0000362,1.00e-13,9;CL:0002076,4.47e-11,42;CL:0002251,8.08e-11,20;CL:0000066,3.03e-10,253;CL:0002077,1.25e-09,34;CL:0000223,6.26e-08,58 | |||
|ontology_enrichment_development_v019=CL:0000357;1.64e-35;6!CL:0000114;1.64e-35;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!1.57e-12!3;UBERON:0001004!1.63e-12!72;UBERON:0001911!2.17e-09!4;UBERON:0005333!2.17e-09!4;UBERON:0008425!2.17e-09!4;UBERON:0005311!2.17e-09!4;UBERON:0004807!2.60e-09!28;UBERON:0007196!3.47e-09!14;UBERON:0001558!3.47e-09!14;UBERON:0000065!5.99e-09!53;UBERON:0004121!3.59e-08!169;UBERON:0000924!7.45e-08!173;UBERON:0006601!7.45e-08!173;UBERON:0003729!1.11e-07!5;UBERON:0000153!3.77e-07!129;UBERON:0007811!3.77e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.12e-18;3!UBERON:0003729;1.71e-16;13!UBERON:0001911;3.05e-14;4!UBERON:0000344;7.98e-11;20!UBERON:0010371;1.39e-10;31!UBERON:0001003;1.60e-08;15!UBERON:0007376;1.60e-08;15!UBERON:0003929;1.99e-08;7!UBERON:0000165;8.50e-08;28!UBERON:0003350;1.76e-07;8!UBERON:0001828;1.76e-07;8!UBERON:0000161;8.89e-07;19!UBERON:0000166;8.89e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.77e-18,3;UBERON:0003729,1.75e-16,13;UBERON:0001911,2.41e-14,4;UBERON:0005333,2.41e-14,4;UBERON:0008425,2.41e-14,4;UBERON:0005311,2.41e-14,4;UBERON:0000344,8.08e-11,20;UBERON:0001003,1.82e-08,15;UBERON:0007376,1.82e-08,15;UBERON:0007383,1.82e-08,15;UBERON:0003102,9.96e-08,99;UBERON:0000076,1.27e-07,8;UBERON:0000165,1.57e-07,29;UBERON:0000930,1.57e-07,29;UBERON:0003350,1.65e-07,8;UBERON:0001828,1.65e-07,8 | |||
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| ||
|short_description=p@chr2:28785707..28785729,+ | |||
}} | }} |
Latest revision as of 09:22, 29 July 2015
Short description: | p@chr2:28785707..28785729, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:28785707..28785729, + |
Coexpression cluster: | C97_small_smallcell_gastrointestinal_argyrophil_putamen_duodenum_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelial cell | 2.34e-35 | 6 |
keratin accumulating cell | 2.34e-35 | 6 |
stratified epithelial cell | 2.34e-35 | 6 |
keratinizing barrier epithelial cell | 2.34e-35 | 6 |
epithelial fate stem cell | 2.34e-35 | 6 |
stratified epithelial stem cell | 2.34e-35 | 6 |
surface ectodermal cell | 2.34e-35 | 6 |
keratinocyte | 3.68e-24 | 5 |
gingival epithelial cell | 1.77e-18 | 3 |
general ecto-epithelial cell | 2.78e-15 | 14 |
buccal mucosa cell | 7.13e-15 | 1 |
endothelial cell of viscerocranial mucosa | 7.13e-15 | 1 |
keratinized cell of the oral mucosa | 7.13e-15 | 1 |
mammary gland epithelial cell | 2.41e-14 | 4 |
epidermal cell | 1.00e-13 | 9 |
endo-epithelial cell | 4.47e-11 | 42 |
epithelial cell of alimentary canal | 8.08e-11 | 20 |
epithelial cell | 3.03e-10 | 253 |
ecto-epithelial cell | 1.25e-09 | 34 |
endodermal cell | 6.26e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.77e-18 | 3 |
mouth mucosa | 1.75e-16 | 13 |
mammary gland | 2.41e-14 | 4 |
mammary bud | 2.41e-14 | 4 |
mammary ridge | 2.41e-14 | 4 |
mammary placode | 2.41e-14 | 4 |
mucosa | 8.08e-11 | 20 |
skin epidermis | 1.82e-08 | 15 |
outer epithelium | 1.82e-08 | 15 |
enveloping layer of ectoderm | 1.82e-08 | 15 |
surface structure | 9.96e-08 | 99 |
external ectoderm | 1.27e-07 | 8 |
mouth | 1.57e-07 | 29 |
stomodeum | 1.57e-07 | 29 |
epithelium of mucosa | 1.65e-07 | 8 |
gingiva | 1.65e-07 | 8 |