FFCP PHASE1:Hg19::chr2:3622829..3622838,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:3622829..3622838,+
|short_description=p5@RPS7
|description=CAGE_peak_5_at_RPS7_5end
|association_with_transcript=-14bp_to_NM_001011,uc002qxw.2_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6201 | |EntrezGene=6201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10440 | |HGNC=10440 | ||
|TSSclassifier=strong | |||
|UniProt=P62081,Q57Z92 | |UniProt=P62081,Q57Z92 | ||
|association_with_transcript=-14bp_to_NM_001011,uc002qxw.2_5end | |||
|cluster_id=chr2:3622829..3622838,+ | |||
|coexpression_cluster_id=C1236 | |||
|description=CAGE_peak_5_at_RPS7_5end | |||
|id=chr2:3622829..3622838,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.24e-19!679;CL:0000004!4.24e-19!679;CL:0000255!4.24e-19!679;CL:0000012!1.31e-18!682;CL:0002321!1.30e-16!248;CL:0000220!3.61e-16!246;CL:0000144!6.47e-12!625;CL:0000393!3.12e-10!60;CL:0000211!3.12e-10!60;CL:0000680!5.55e-10!57;CL:0000056!5.55e-10!57;CL:0000355!5.55e-10!57;CL:0000066!1.03e-09!254;CL:0000055!1.71e-09!180;CL:0000003!3.87e-09!722;CL:0000187!4.74e-09!54;CL:0002371!6.51e-09!591;CL:0000183!2.54e-08!59;CL:0000222!9.97e-08!119;CL:0002076!1.47e-07!43;CL:0000192!3.37e-07!42;CL:0000514!3.37e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.61e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.99e-11,250;CL:0000680,3.61e-09,58;CL:0000056,3.61e-09,58;CL:0000355,3.61e-09,58;CL:0000393,4.76e-09,61;CL:0000211,4.76e-09,61;CL:0000187,2.02e-08,55;CL:0002368,1.25e-07,13;CL:0002076,7.13e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!4.60e-12!239;DOID:162!7.66e-12!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.06e-07,51;DOID:0060083,2.06e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0004290!9.91e-11!70;UBERON:0003104!1.40e-10!238;UBERON:0009142!1.40e-10!238;UBERON:0000490!3.24e-10!138;UBERON:0001134!4.62e-10!61;UBERON:0002036!4.62e-10!61;UBERON:0003082!4.62e-10!61;UBERON:0000486!6.34e-10!82;UBERON:0000914!7.98e-10!83;UBERON:0002329!7.98e-10!83;UBERON:0003077!7.98e-10!83;UBERON:0003059!7.98e-10!83;UBERON:0007282!7.98e-10!83;UBERON:0009618!7.98e-10!83;UBERON:0007285!7.98e-10!83;UBERON:0002385!3.76e-09!63;UBERON:0001015!3.76e-09!63;UBERON:0000383!3.76e-09!63;UBERON:0005256!2.50e-07!143;UBERON:0002100!2.76e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.33e-07;31!UBERON:0001015;1.33e-07;31!UBERON:0000383;1.33e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,4.21e-12,148;UBERON:0002329,1.18e-11,71;UBERON:0003059,1.18e-11,71;UBERON:0007282,1.18e-11,71;UBERON:0004290,1.18e-11,71;UBERON:0009618,1.18e-11,71;UBERON:0003077,2.72e-11,72;UBERON:0007285,2.72e-11,72;UBERON:0007524,6.11e-11,73;UBERON:0007503,1.58e-10,78;UBERON:0001134,1.09e-09,62;UBERON:0002036,1.09e-09,62;UBERON:0003082,1.09e-09,62;UBERON:0000486,3.51e-09,83;UBERON:0002385,5.15e-09,64;UBERON:0001015,5.15e-09,64;UBERON:0000383,5.15e-09,64;UBERON:0005256,7.33e-09,122;UBERON:0002100,1.07e-07,199;UBERON:0003104,2.34e-07,160;UBERON:0009142,2.34e-07,160 | |||
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| ||
|short_description=p5@RPS7 | |||
}} | }} |
Latest revision as of 00:48, 17 September 2015
Short description: | p5@RPS7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RPS7_5end |
Coexpression cluster: | C1236_acute_Mesenchymal_iPS_Skeletal_Bronchial_chronic_embryonic |
Association with transcript: | -14bp_to_NM_001011, uc002qxw.2_5end |
EntrezGene: | RPS7 |
HGNC: | 10440 |
UniProt: | P62081Q57Z92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.99e-11 | 250 |
muscle precursor cell | 3.61e-09 | 58 |
myoblast | 3.61e-09 | 58 |
multi-potent skeletal muscle stem cell | 3.61e-09 | 58 |
electrically responsive cell | 4.76e-09 | 61 |
electrically active cell | 4.76e-09 | 61 |
muscle cell | 2.02e-08 | 55 |
respiratory epithelial cell | 1.25e-07 | 13 |
endo-epithelial cell | 7.13e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 4.21e-12 | 148 |
somite | 1.18e-11 | 71 |
presomitic mesoderm | 1.18e-11 | 71 |
presumptive segmental plate | 1.18e-11 | 71 |
dermomyotome | 1.18e-11 | 71 |
trunk paraxial mesoderm | 1.18e-11 | 71 |
paraxial mesoderm | 2.72e-11 | 72 |
presumptive paraxial mesoderm | 2.72e-11 | 72 |
dense mesenchyme tissue | 6.11e-11 | 73 |
epithelial vesicle | 1.58e-10 | 78 |
skeletal muscle tissue | 1.09e-09 | 62 |
striated muscle tissue | 1.09e-09 | 62 |
myotome | 1.09e-09 | 62 |
multilaminar epithelium | 3.51e-09 | 83 |
muscle tissue | 5.15e-09 | 64 |
musculature | 5.15e-09 | 64 |
musculature of body | 5.15e-09 | 64 |
trunk mesenchyme | 7.33e-09 | 122 |
trunk | 1.07e-07 | 199 |
mesenchyme | 2.34e-07 | 160 |
entire embryonic mesenchyme | 2.34e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.06e-07 | 51 |
immune system cancer | 2.06e-07 | 51 |