FFCP PHASE1:Mm9::chr12:101443818..101443871,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12313,12314,12315 | |EntrezGene=12313,12314,12315 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1098 | |MCL_coexpression_id=1098 | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=205bp_to_ENSMUST00000127300_5end | |association_with_transcript=205bp_to_ENSMUST00000127300_5end | ||
|cluster_id=chr12:101443818..101443871,+ | |||
|description=CAGE_peak_4_at_Calm2_5end,CAGE_peak_5_at_Calm3_5end,CAGE_peak_6_at_Calm1_5end | |description=CAGE_peak_4_at_Calm2_5end,CAGE_peak_5_at_Calm3_5end,CAGE_peak_6_at_Calm1_5end | ||
|id=chr12:101443818..101443871,+ | |id=chr12:101443818..101443871,+ | ||
Latest revision as of 04:42, 26 September 2015
| Short description: | p4@Calm2, p5@Calm3, p6@Calm1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Calm2_5end, CAGE_peak_5_at_Calm3_5end, CAGE_peak_6_at_Calm1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1098 |
| Association with transcript: | 205bp_to_ENSMUST00000127300_5end |
| EntrezGene: | 12313,12314,12315 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@Calm2p5@Calm3p6@Calm1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| regional part of nervous system | 3.28e-13 | 54 |
| gray matter | 3.15e-12 | 34 |
| neural tube | 7.22e-12 | 52 |
| neural rod | 7.22e-12 | 52 |
| future spinal cord | 7.22e-12 | 52 |
| neural keel | 7.22e-12 | 52 |
| nervous system | 6.19e-11 | 75 |
| central nervous system | 1.23e-10 | 73 |
| brain grey matter | 2.23e-09 | 29 |
| regional part of telencephalon | 2.23e-09 | 29 |
Showing 1 to 10 of 30 entries
