FFCP PHASE1:Hg19::chr3:16555018..16555038,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:16555018..16555038,-
|short_description=p3@RFTN1
|description=CAGE_peak_3_at_RFTN1_5end
|association_with_transcript=0bp_to_ENST00000453536_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23180 | |EntrezGene=23180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30278 | |HGNC=30278 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAR1 | |UniProt=F8WAR1 | ||
|association_with_transcript=0bp_to_ENST00000453536_5end | |||
|cluster_id=chr3:16555018..16555038,- | |||
|coexpression_cluster_id=C4303 | |||
|description=CAGE_peak_3_at_RFTN1_5end | |||
|id=chr3:16555018..16555038,- | |||
|ontology_enrichment_celltype=CL:0000048!2.93e-12!430;CL:0000723!5.90e-11!436;CL:0000738!5.81e-10!140;CL:0000034!7.10e-10!444;CL:0002320!8.14e-10!365;CL:0000134!2.03e-09!358;CL:0002031!5.66e-09!124;CL:0002087!1.89e-08!119;CL:0000219!5.36e-08!390;CL:0000136!6.10e-08!15;CL:0000451!5.32e-07!10;CL:0002057!7.04e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.63e-08;13!CL:0000451;1.42e-07;10!CL:0000860;1.64e-07;33!CL:0002057;1.64e-07;33!CL:0000473;8.98e-07;39!CL:0000234;8.98e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,7.38e-11,427;CL:0000738,1.30e-10,136;CL:0000723,8.62e-10,433;CL:0002320,1.24e-09,361;CL:0000134,2.48e-09,354;CL:0000034,4.31e-09,441;CL:0002031,5.98e-09,120;CL:0000136,6.02e-09,15;CL:0002087,1.90e-08,115;CL:0000219,2.30e-08,386;CL:0000557,1.28e-07,67;CL:0000451,1.34e-07,10;CL:0002009,2.65e-07,61;CL:0000473,3.04e-07,48;CL:0000234,3.04e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.99e-09!375;UBERON:0000479!1.36e-08!787;UBERON:0002204!1.41e-07!167;UBERON:0002390!7.76e-07!102;UBERON:0003061!7.76e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000479,1.59e-09,773;UBERON:0002384,3.59e-09,371;UBERON:0002390,1.12e-07,98;UBERON:0003061,1.12e-07,98;UBERON:0002405,1.28e-07,93;UBERON:0002193,4.25e-07,108 | |||
|phase1_expression=24.163224442984,28.2612691536098,16.7735740874206,33.024188456533,18.7723659659461,22.6808016266096,0,3.15859936713415,8.35794010239483,2.7030733015166,0,0.873765488520689,0.263766978228454,2.97039247104112,2.65117900582333,2.01697543935533,1.80808358407193,1.46062018077475,1.46379839637152,5.17108443922509,0.816002764977012,5.01527554364941,12.3081474466354,4.65373045247806,10.6711243655582,29.801228241701,33.1686381377781,27.3126411158467,5.50709987588466,4.98978217526377,1.70297735647684,0,0.6024118375565,0.369754010166788,1.93668001450754,1.84820002233648,0.587200878669695,6.09394949385065,3.81034450193269,4.99125002646459,1.34349284543955,0.647787332037959,0.257575567634187,1.01778767145695,3.40088349319928,1.4555043671269,2.78914844286822,1.6446715520873,5.26500830521676,4.02769349251011,3.07392847834921,4.25668013799453,18.6162667597774,10.3277549373412,16.251178391321,1.31769637679823,1.36453075028923,2.47195832889593,11.3251040177234,6.41858054152187,12.7867425159808,0.989553900560148,2.59302754908121,2.13112375266347,6.67481248845743,7.94339314567596,21.7987787148451,4.27122730936464,4.17186334736161,3.9093992046921,6.05399502633369,6.99727508376373,17.7218936966895,0.845021145247767,1.91343869968539,0.209658645508376,0.112328631146495,0.150176892841506,0,1.42506371870624,0.99458338599545,0.182664153764634,1.75996244461323,1.63841583378639,0.889509253863555,0.853460445133014,0.400395987036012,0.574752439954483,1.98313461835459,0,3.98449078376614,5.28513470433845,3.82273228125229,1.32171328579026,9.52864557068611,0.263384084775077,1.180258620683,3.93010762749165,3.70082698199117,0.334372990781356,2.28145586643513,0.946895611469467,1.94826728407911,0.779873198196215,1.17842362989935,1.10766947291811,1.08321545506006,0.128091319725675,0.390178042679635,0.657751618414705,1.38175008892924,0.869409257205157,1.4828656316206,0.535081656179426,0,0.226618685395132,1.53288197440768,0.34362744548263,0.506039384039006,0.318565414324097,1.30216690771284,0.950452044448374,0.150575119077773,0.895906278080929,0,0.947109008176067,0,3.83052812126992,4.54648332831962,2.02754165435919,0,0.670700859703636,1.53435074212236,1.80719576192283,2.50668955317945,2.31754430337318,0,0.486634870302636,0,0,0.43917392846563,3.6019245761871,0,0.370784442784429,3.8945687238562,3.65672448328461,9.44001519683943,5.24679373471752,7.43593384014166,4.45749001595478,0.39752481473341,2.58070378531837,0.694281003215189,0,0.838998872419812,0.275118041940067,0.417989933073621,1.29208379584664,0,1.67360306382335,0,0.760272105718513,0,2.20597848207521,0,0.267899184852239,0.22452937262617,0.450445921933289,0,0,0.183201743930407,0,0,0,0.496971951695318,2.78587125662075,1.72131935057184,1.72101972449288,1.06400514659507,1.12135520028461,9.60740961567345,3.45334567784024,0,1.88594940897563,2.94231425604226,4.54072282934794,4.60940739583999,0.70296429550139,0.312160076830321,1.1409436430889,1.04614076386261,0.23486899728753,0.161872944368132,1.12360645361799,5.51216262388212,0.737005903870608,9.71262343052195,7.12801714369232,4.20353779773547,0.910161361938026,2.87447256726495,0.505008341862199,1.37630371859161,1.93944880838928,2.19488810440419,4.90380473278431,2.10333282469236,1.58805056424029,7.71375433462106,3.84403299873421,0.423863802319124,5.70173082560364,1.03052529238439,7.9868567414145,3.35010341396862,5.23206629947925,9.15907848515267,5.55354303337052,1.47279837827679,3.07127507955743,8.87523981291536,3.32481924151213,1.3564847384839,1.54608682530637,1.63647672354501,0,0,0,0,0,0,0,18.7739438795779,24.4431556513296,9.66944449467364,9.28735856063958,6.49691533502627,0.946454400318751,1.34867752062481,1.20505514941741,0.772057809126758,0.871517776369625,0.237270619111097,0.674156540800822,0.588664395376038,0.769494313892781,0.738155454624648,0,2.8810180793198,0,11.4079531339648,3.9313088667105,5.90789906681404,0,2.21379189377604,1.88724591328378,0.768251997860379,0,0.100528972411631,0,0,2.07986957055916,0,0.231860809950154,2.58299127318808,1.01056513432752,0,0.761016608938393,0.790204397959275,0,0.984868024349589,5.38209809820247,3.41851673264075,0,1.34385702559088,0.567100388969546,0,0,0,47.2956708380106,1.84901711427775,2.69526550203004,1.29707958075265,1.64115163454294,0,0,0,1.71072446022705,0.102827492703324,0,0,0.560655421726804,1.30788020649984,0.2933531432838,1.68053230485111,0,0,4.78688609852767,6.24044621468197,0.771622122786426,1.41849132023278,1.0656887160644,2.57360388584666,1.08524321078289,0,0.325736184293735,2.48774364119782,1.58390374586686,1.20575750823834,0.871533458600294,1.79951384127703,2.43247561282381,1.00451418286425,6.32501818449095,1.91699884393266,8.04033550838797,0,3.18518874668674,3.28762116080613,4.83464600747718,2.01753259188349,4.3346767244424,4.09692392233083,4.87703537863044,8.63921722356376,6.50699269288109,5.41302168944387,5.36052049069916,7.01732626818479,0,0,0.414415513436035,3.43536176813592,0.500170521059677,2.17012018959788,2.70362119990049,1.96271887676878,2.05013139544115,1.2885555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| ||
|short_description=p3@RFTN1 | |||
}} | }} |
Latest revision as of 13:09, 16 September 2015
Short description: | p3@RFTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RFTN1_5end |
Coexpression cluster: | C4303_migratory_cord_Mast_immature_Adipocyte_mature_mycosis |
Association with transcript: | 0bp_to_ENST00000453536_5end |
EntrezGene: | RFTN1 |
HGNC: | 30278 |
UniProt: | F8WAR1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 7.38e-11 | 427 |
leukocyte | 1.30e-10 | 136 |
somatic stem cell | 8.62e-10 | 433 |
connective tissue cell | 1.24e-09 | 361 |
mesenchymal cell | 2.48e-09 | 354 |
stem cell | 4.31e-09 | 441 |
hematopoietic lineage restricted progenitor cell | 5.98e-09 | 120 |
fat cell | 6.02e-09 | 15 |
nongranular leukocyte | 1.90e-08 | 115 |
motile cell | 2.30e-08 | 386 |
granulocyte monocyte progenitor cell | 1.28e-07 | 67 |
dendritic cell | 1.34e-07 | 10 |
macrophage dendritic cell progenitor | 2.65e-07 | 61 |
defensive cell | 3.04e-07 | 48 |
phagocyte | 3.04e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
tissue | 1.59e-09 | 773 |
connective tissue | 3.59e-09 | 371 |
hematopoietic system | 1.12e-07 | 98 |
blood island | 1.12e-07 | 98 |
immune system | 1.28e-07 | 93 |
hemolymphoid system | 4.25e-07 | 108 |