FFCP PHASE1:Hg19::chr4:157892733..157892740,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:157892733..157892740,-
|short_description=p17@PDGFC
|description=CAGE_peak_17_at_PDGFC_5end
|association_with_transcript=-187bp_to_ENST00000502773,ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56034 | |EntrezGene=56034 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8801 | |HGNC=8801 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NRA1 | |UniProt=Q9NRA1 | ||
|association_with_transcript=-187bp_to_ENST00000502773,ENST00000543489,NM_016205,NR_036641,uc003iph.1,uc003ipi.1,uc011cis.1_5end | |||
|cluster_id=chr4:157892733..157892740,- | |||
|description=CAGE_peak_17_at_PDGFC_5end | |||
|id=chr4:157892733..157892740,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.61e-18;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.62e-18,12 | |||
|ontology_enrichment_development_v019=UBERON:0003104;9.70e-15;31!UBERON:0003918;1.20e-12;10!UBERON:0007687;1.20e-12;10!UBERON:0004161;1.96e-11;11!UBERON:0009497;9.18e-10;13!UBERON:0001041;2.57e-07;30 | |||
|ontology_enrichment_disease=DOID:7!2.49e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:3910;6.14e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,5.74e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005172!1.33e-07!55;UBERON:0005173!1.33e-07!55;UBERON:0002417!8.85e-07!61;UBERON:0000916!8.85e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.26e-17;19!UBERON:0006925;2.26e-17;19!UBERON:0002423;3.29e-13;25!UBERON:0005172;6.51e-11;52!UBERON:0005173;6.51e-11;52!UBERON:0002365;2.88e-10;31!UBERON:0002330;2.88e-10;31!UBERON:0002368;4.75e-09;33!UBERON:0004903;6.14e-08;2!UBERON:0002173;6.14e-08;2!UBERON:0002186;6.14e-08;2!UBERON:0002417;1.03e-07;58!UBERON:0000916;1.03e-07;58!UBERON:0006554;2.26e-07;30!UBERON:0001008;2.26e-07;30!UBERON:0000949;5.58e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007499,9.03e-19,25;UBERON:0009856,4.85e-18,26;UBERON:0002107,2.11e-17,19;UBERON:0006925,2.11e-17,19;UBERON:0008836,2.11e-17,19;UBERON:0008835,4.93e-15,22;UBERON:0003894,4.93e-15,22;UBERON:0005172,5.49e-15,54;UBERON:0005173,5.49e-15,54;UBERON:0009854,2.22e-14,23;UBERON:0002417,2.05e-13,60;UBERON:0000916,2.05e-13,60;UBERON:0009497,3.13e-13,25;UBERON:0000015,3.13e-13,25;UBERON:0002423,3.13e-13,25;UBERON:0006235,3.13e-13,25;UBERON:0004161,3.13e-13,25;UBERON:0002365,1.15e-10,31;UBERON:0002330,1.15e-10,31;UBERON:0005177,1.08e-09,101;UBERON:0002368,1.93e-09,35;UBERON:0009569,1.21e-08,112;UBERON:0004903,5.74e-08,2;UBERON:0002173,5.74e-08,2;UBERON:0002186,5.74e-08,2;UBERON:0005911,2.23e-07,82;UBERON:0000949,2.52e-07,45 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0,0,0.263504357079378,0.785874452986276,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0.61246251376468,0,0,0,0,0,0,0.336672227908132,0.125118519871964,0.554128230968366,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,1.96565443335525,1.18157981336281,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.468565659970853,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0.846016147141356,0,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0.512900250232778,0,0,0.9273691048295,0,0.165018999841176,0.574265537996172,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0.145016693914229,0.0852266274161009,0,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0.202182481573316,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.75894634753143,0,0.0962221127255121,0,0,1.69458841398202,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.485442086998054,0,0,0,0,0,0.994147647766298,0,0,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0.262379999988587,0,2.16207551742449,1.5255219017566,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0.476809736941136,0.421996129056054,0.163232808159148,0,0.216388639742091,0,0.0884575645033392,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.693373365065693,0.173559738335131,0,0.174118413160805,0.34945333648406,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0.426905989478705,0.19980960958213,0,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,0.360299883542404,1.16495949527454,0.630265458457789,1.31865373409866,0.808842526250219,0,0,0,0,0,0,0,0,0,0.121499113316049,0,2.28536551167675,1.73100140845494,0,0,0.575745591958336,0,0,1.017074150619,0,0,0,0,0,0.170388021785422,0.113312091520126,1.61207457045891,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0.544017803369474,1.0027595760908,0,0.655745261419609,0,0,0,0.1251909307065,0,0,0,0.138348634936231,0.249960815924213,0,0,0,0,0,0,0.467426619694449,0,0.189403005275089,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0.928067519756987,0,0,0.343395705182793,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0,0.219284049578707,0,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0.194860308839388,0,0,0,0,0,0,0.106691729694141,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0.588886311006154,0.353909170043221,0,0.231051332300676,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,0,0.171488009437418,0,0,0,0.111231401892069,0,0,0,0,0.431855182437243,0.47775168788705,0.0714765441766563,0,0.464965701472501,0,0,0,0,0,0.430227358820278,0.236664001461131,0.0852134047591577,0,0,0,0,0,0,0.487671699929078,0,0.102662806856247,0,0.485710993059139,0,0,0.951360726220549,0,0,0,0.848915739187391,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.112131862580613,0.0636471582781649,0,0,0,0,0.143444410785353,0.332660356546013,0.732629417498771,0,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0,0,0.263504357079378,0.785874452986276,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0.61246251376468,0,0,0,0,0,0,0.336672227908132,0.125118519871964,0.554128230968366,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,1.96565443335525,1.18157981336281,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.468565659970853,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0.846016147141356,0,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0.512900250232778,0,0,0.9273691048295,0,0.165018999841176,0.574265537996172,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0.145016693914229,0.0852266274161009,0,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0.202182481573316,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.75894634753143,0,0.0962221127255121,0,0,1.69458841398202,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.485442086998054,0,0,0,0,0,0.994147647766298,0,0,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0.262379999988587,0,2.16207551742449,1.5255219017566,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0.476809736941136,0.421996129056054,0.163232808159148,0,0.216388639742091,0,0.0884575645033392,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.693373365065693,0.173559738335131,0,0.174118413160805,0.34945333648406,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0.426905989478705,0.19980960958213,0,0,0,0,0.248505071130865,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0,0.360299883542404,1.16495949527454,0.630265458457789,1.31865373409866,0.808842526250219,0,0,0,0,0,0,0,0,0,0.121499113316049,0,2.28536551167675,1.73100140845494,0,0,0.575745591958336,0,0,1.017074150619,0,0,0,0,0,0.170388021785422,0.113312091520126,1.61207457045891,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0.544017803369474,1.0027595760908,0,0.655745261419609,0,0,0,0.1251909307065,0,0,0,0.138348634936231,0.249960815924213,0,0,0,0,0,0,0.467426619694449,0,0.189403005275089,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0.928067519756987,0,0,0.343395705182793,0,0,0,0.214441591374926,0,0.226705925512272,0,0,0,0,0.219284049578707,0,0.38582807654183,0.168942440653073,0.256241518587947,0,0,0,0.194860308839388,0,0,0,0,0,0,0.106691729694141,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0.588886311006154,0.353909170043221,0,0.231051332300676,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,0,0.171488009437418,0,0,0,0.111231401892069,0,0,0,0,0.431855182437243,0.47775168788705,0.0714765441766563,0,0.464965701472501,0,0,0,0,0,0.430227358820278,0.236664001461131,0.0852134047591577,0,0,0,0,0,0,0.487671699929078,0,0.102662806856247,0,0.485710993059139,0,0,0.951360726220549,0,0,0,0.848915739187391,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.112131862580613,0.0636471582781649,0,0,0,0,0.143444410785353,0.332660356546013,0.732629417498771,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p17@PDGFC | |||
}} | }} |
Latest revision as of 09:19, 16 September 2015
Short description: | p17@PDGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_PDGFC_5end |
Coexpression cluster: | NA |
Association with transcript: | -187bp_to_ENST00000502773, ENST00000543489, NM_016205, NR_036641, uc003iph.1, uc003ipi.1, uc011cis.1_5end |
EntrezGene: | PDGFC |
HGNC: | 8801 |
UniProt: | Q9NRA1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.62e-18 | 12 |
Ontology term | p-value | n |
---|---|---|
epithelial sac | 9.03e-19 | 25 |
sac | 4.85e-18 | 26 |
liver | 2.11e-17 | 19 |
digestive gland | 2.11e-17 | 19 |
liver bud | 2.11e-17 | 19 |
hepatic diverticulum | 4.93e-15 | 22 |
liver primordium | 4.93e-15 | 22 |
abdomen element | 5.49e-15 | 54 |
abdominal segment element | 5.49e-15 | 54 |
digestive tract diverticulum | 2.22e-14 | 23 |
abdominal segment of trunk | 2.05e-13 | 60 |
abdomen | 2.05e-13 | 60 |
epithelium of foregut-midgut junction | 3.13e-13 | 25 |
anatomical boundary | 3.13e-13 | 25 |
hepatobiliary system | 3.13e-13 | 25 |
foregut-midgut junction | 3.13e-13 | 25 |
septum transversum | 3.13e-13 | 25 |
exocrine gland | 1.15e-10 | 31 |
exocrine system | 1.15e-10 | 31 |
trunk region element | 1.08e-09 | 101 |
endocrine gland | 1.93e-09 | 35 |
subdivision of trunk | 1.21e-08 | 112 |
bronchoalveolar duct junction | 5.74e-08 | 2 |
alveolar duct | 5.74e-08 | 2 |
bronchiole | 5.74e-08 | 2 |
endo-epithelium | 2.23e-07 | 82 |
endocrine system | 2.52e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 5.74e-08 | 2 |