FFCP PHASE1:Hg19::chr4:174255494..174255516,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:174255494..174255516,-
|short_description=p1@HMGB2
|description=CAGE_peak_1_at_HMGB2_5end
|association_with_transcript=0bp_to_NM_001130688,uc003ita.3_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3148 | |EntrezGene=3148 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5000 | |HGNC=5000 | ||
|TSSclassifier=strong | |||
|UniProt=P26583 | |UniProt=P26583 | ||
|association_with_transcript=0bp_to_NM_001130688,uc003ita.3_5end | |||
|cluster_id=chr4:174255494..174255516,- | |||
|coexpression_cluster_id=C2785 | |||
|description=CAGE_peak_1_at_HMGB2_5end | |||
|id=chr4:174255494..174255516,- | |||
|ontology_enrichment_celltype=CL:0000037!6.86e-17!172;CL:0000566!6.86e-17!172;CL:0002032!8.70e-17!165;CL:0000837!8.70e-17!165;CL:0000988!3.11e-15!182;CL:0000763!3.22e-09!112;CL:0000049!3.22e-09!112;CL:0000542!3.46e-08!53;CL:0000051!3.46e-08!53;CL:0000838!9.45e-08!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.09e-16,168;CL:0002032,1.36e-16,161;CL:0000837,1.36e-16,161;CL:0000988,3.93e-15,177;CL:0000763,4.74e-09,108;CL:0000049,4.74e-09,108;CL:0000542,3.46e-08,53;CL:0000051,3.46e-08,53;CL:0000838,9.45e-08,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.21e-36!235;DOID:14566!3.86e-34!239;DOID:2531!4.09e-28!51;DOID:0060083!4.09e-28!51;DOID:1240!7.17e-24!39;DOID:0050686!1.69e-20!137;DOID:8692!7.40e-19!31;DOID:0050687!3.08e-14!143;DOID:305!5.33e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.53e-18;39!DOID:8692;2.90e-18;31!DOID:2531;4.45e-17;51!DOID:0060083;4.45e-17;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.21e-36,235;DOID:14566,3.86e-34,239;DOID:2531,4.09e-28,51;DOID:0060083,4.09e-28,51;DOID:1240,7.17e-24,39;DOID:0050686,1.69e-20,137;DOID:8692,7.40e-19,31;DOID:0050687,3.08e-14,143;DOID:305,5.33e-10,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@HMGB2 | |||
}} | }} |
Latest revision as of 19:07, 16 September 2015
Short description: | p1@HMGB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGB2_5end |
Coexpression cluster: | C2785_Reticulocytes_acute_NK_non_chronic_anaplastic_merkel |
Association with transcript: | 0bp_to_NM_001130688, uc003ita.3_5end |
EntrezGene: | HMGB2 |
HGNC: | 5000 |
UniProt: | P26583 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.09e-16 | 168 |
hematopoietic oligopotent progenitor cell | 1.36e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.36e-16 | 161 |
hematopoietic cell | 3.93e-15 | 177 |
myeloid cell | 4.74e-09 | 108 |
common myeloid progenitor | 4.74e-09 | 108 |
lymphocyte | 3.46e-08 | 53 |
common lymphoid progenitor | 3.46e-08 | 53 |
lymphoid lineage restricted progenitor cell | 9.45e-08 | 52 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.21e-36 | 235 |
disease of cellular proliferation | 3.86e-34 | 239 |
hematologic cancer | 4.09e-28 | 51 |
immune system cancer | 4.09e-28 | 51 |
leukemia | 7.17e-24 | 39 |
organ system cancer | 1.69e-20 | 137 |
myeloid leukemia | 7.40e-19 | 31 |
cell type cancer | 3.08e-14 | 143 |
carcinoma | 5.33e-10 | 106 |