MCL coexpression mm9:781: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0.556381817533224,0.412308178592804,0.927502755740251,0.814320337651741,0.197455803007546,0.240134270796383,0,0,0.0101486520582838,0,0,0,0.00404416411889096,0.0547418013233581,0.0286283151868946,0,0.014135042967545,0,0,0.0423783749981931,0,0,0.383490114865065,0.48863747658106,0.55242403574427,0.527582121110922,0.479507985541175,0.887322275267851,1.16967977735663,0.391867612169968,0,0,0,0.118001795953612,0.105135898484035,0.0947778526632132,0,0,0,0,0,0,0,0.00465955286320471,0,0,0,0,0.0085734073500782,0,0,0,0,0,0,0,0,0,0,0,0,0,0.030970075346764,0,0,0,0.0156893986871448,0,0,0,0,0,0,0.00441659078780988,0,0,0,0,0.00597808874213562,0,0,0,0,0.0128676639655542,0,0,0,0.0103275253204363,0.00351547891530906,0.0547594838106769,0,0.0414334947025387,0,0,0,0.139928703151415,0,0,0,0.0119757694415454,0,0,0,0.0474604509845511,0.0197813861694613,0,0.395596053270459,0.0343027523160598,0.0133575820913333,0,0,0,0.00677451755042,0.00536466719179779,0,0.0213187444142031,0.00651705528544886,0.0305801798230341,0.0190904824247006,0,0.0190766632640748,0.101546782275237,0,0,0.881892051623427,0.010365796132713,0,0,0.00673541874183017,0.0181787492282452,0,0.0143974086096359,0,0,0,0.0136254299065379,0.016380140850199,0,0.0846739350056095,0.024182491502154,0.00998561606812303,0.0148420652109121,0.0271013040459964,0.006156248648619,0.0110075861933814,0.0153601891765687,0.0453831113199653,0,0.0216841319951978,0.0282745498642289,0.00956371486994618,0.0473591077660871,0.0595862451812884,0.0767854623496481,0.00875906609332304,0,0,0,0,0,0.00798942757650871,0.0102533411546287,0,0.00692292466852634,0,0,0.00532910306863217,0.00735131255829134,0,0,0,0.0244172048457502,0.0121538001642253,0.00920993627727028,0,0.800611191413703,0.432698422988358,0,0.0201542509841542,0.0169146749858504,0.0265967023096741,0,0.0541518354257127,0.406995640478312,0.0987713654017402,0.101925860017553,0.146203843656155,0.119563511923718,0.462960145085121,0.461386495199197,0.449632363078562,0,0,0.0364203649382817,0.00894452214199868,0.00855411606363058,0.0098129670432154,0.0113412069412662,0.0516915518167919,0.0838078073340962,0.0655443547032189,0.0125285168995661,0,0.0173186924268974,0,0.00891279187666842,0.0208519500137098,0,0.0122014881105298,0,0,0.0429974513455986,0,0.0131051450341196,0,0.00796224122367792,0,0.0385284451790519,0.0155065396316706,0.00728518175811452,0.00756569215002893,0,0.0074732463241217,0.0206079897291055,0,0,0.0193068704038124,0.0142786246883701,0.0146448842945822,0.00768681814910609,0.0245229663197758,0,0.0209578628940242,0.0912569961667246,0.0719818135751762,0,0,0,0,0,0,0,0,0,0,0,0.012372056615544,0,0,0.0756802984579537,0,0,0.0600531998221381,0,0.0104882753183777,0.0127465440363142,0,0.0124856666866263,0.0129355728866832,0.0511188768608712,0,0,0,0,0,0,0.00798938801648439,0.0158236957051726,0.0172147958342511,0.028462957684537,0.0259864267657246,0.0244039871958238,0,0.0287416453233534,0.0263166653648478,0.00961643206753861,0.104394555069074,0.117754082878604,0.0941150182676266,0.106030726585762,0.0932688603435606,0.287192501636682,0,0.052552543205766,0.0181081335711859,0.00819884860665192,0.00832790175090829,0.0350838334505619,0.041693018136132,0,0,0.0167370699577356,0.0323415094262829,0,0.0229794060819184,0.0572765630352457,0.0713125414537224,0.0933901659223832,0.0551254880932152,0.0390446492285151,0.112924833507383,0.0513343789630288,0.137257968982307,0,0,0,0.017148534856915,0.0200980337480647,0,0.00535467187292324,0,0.0131984856559162,0,0.0122139978411891,0,0.0164239480999618,0.00471796555481828,0.0170404414120278,0,0.0161454610401186,0,0.0191356987895023,0.0046415649776473,0.00354397049880978,0.00463541683245289,0.00448754016400604,0.00443272101701604,0.0053339232787078,0.106889357146739,0,0.00414583037159387,0,0.0242879430459383,0.0517778432067041,0.0652851286855026,0.0856540584886981,0.0639227483983528,0.0364753773314582,0.0182721767226341,0.0218555415160377,0,0.0251801303843004,0.0271527315780592,0,0.0179404662513576,0,0,0.00910155597424144,0,0.0141755624442888,0.0105009347944964,0,0.0314582449517383,0.024651989549122,0.0290064690255144,0.040292085331151,0.0108717900864151,0.0218038147470018,0.0216398007253116,0.0162665027604613,0.0334955760845389,0.0374064262654622,0.0187969737629093,0.0100587941380015,0.01702386565092,0.0166512351961611,0.0323315520220274,0.0394248818642874,0.0146581984528008,0.0260380285996038,0.0130970803147449,0.0126619051874505,0.0179867041343711,0.0162129559422612,0.0572323344729069,0.0477790332487254,0,0.0278835464530076,0.0280418027010888,0.0288560278610454,0.0184201612647637,0.0450432829232189,0.048791471291552,0.0475202644192046,0.074533979989953,0.0453329522369567,0.0341269266112577,0.0367694792707044|coexpression_dpi_cluster_scores_median=0,0.490499597182602,0.281033021353425,0.809179510524466,0.699591975664485,0.125727960712818,0.230662930292494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21483582178082,0.375929720448546,0.434999136142762,0.435055294398777,0.399379240739151,0.904762407607656,1.12546423055539,0.275753957844422,0,0,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152695919012311,0,0,0,0,0,0,0,0,0,0,0.255100480297832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803770988873759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56150092538788,0.313403641258937,0,0,0,0,0,0,0.384458647382152,0,0,0.0788034163803455,0,0.446791645189773,0.528597742754588,0.341404378058948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335643082588139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00365576547784741;21413,12023!GO:0045892;negative regulation of transcription, DNA-dependent;0.00365576547784741;21413,12023!GO:0016481;negative regulation of transcription;0.00365576547784741;21413,12023!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00365576547784741;21413,12023!GO:0042637;catagen;0.00365576547784741;12023!GO:0031324;negative regulation of cellular metabolic process;0.00365576547784741;21413,12023!GO:0009892;negative regulation of metabolic process;0.00400373694120981;21413,12023!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00456441499641985;21413,12023!GO:0005667;transcription factor complex;0.00456441499641985;21413,12023!GO:0006366;transcription from RNA polymerase II promoter;0.00456441499641985;21413,12023!GO:0044451;nucleoplasm part;0.00635773056744951;21413,12023!GO:0005654;nucleoplasm;0.00640120353318183;21413,12023!GO:0031981;nuclear lumen;0.00835083855626479;21413,12023!GO:0048820;hair follicle maturation;0.00863300937840844;12023!GO:0031974;membrane-enclosed lumen;0.00863300937840844;21413,12023!GO:0043233;organelle lumen;0.00863300937840844;21413,12023!GO:0048523;negative regulation of cellular process;0.0101479934017225;21413,12023!GO:0048519;negative regulation of biological process;0.011067884623619;21413,12023!GO:0044428;nuclear part;0.0128492932728319;21413,12023!GO:0045445;myoblast differentiation;0.0161890987055238;12023!GO:0022404;molting cycle process;0.0161890987055238;12023!GO:0001942;hair follicle development;0.0161890987055238;12023!GO:0022405;hair cycle process;0.0161890987055238;12023!GO:0042633;hair cycle;0.0161890987055238;12023!GO:0042303;molting cycle;0.0161890987055238;12023!GO:0003714;transcription corepressor activity;0.0202653465137349;21413!GO:0042692;muscle cell differentiation;0.0207599354898422;12023!GO:0048741;skeletal muscle fiber development;0.0207599354898422;12023!GO:0048747;muscle fiber development;0.0207599354898422;12023!GO:0043234;protein complex;0.020873176648202;21413,12023!GO:0006355;regulation of transcription, DNA-dependent;0.0230245297652552;21413,12023!GO:0006351;transcription, DNA-dependent;0.0230245297652552;21413,12023!GO:0021700;developmental maturation;0.0230245297652552;12023!GO:0032774;RNA biosynthetic process;0.0230245297652552;21413,12023!GO:0003677;DNA binding;0.0230245297652552;21413,12023!GO:0007519;skeletal muscle development;0.0230245297652552;12023!GO:0008544;epidermis development;0.0230245297652552;12023!GO:0045449;regulation of transcription;0.0230245297652552;21413,12023!GO:0003682;chromatin binding;0.0230245297652552;12023!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0230245297652552;21413,12023!GO:0007398;ectoderm development;0.0230245297652552;12023!GO:0006350;transcription;0.0230245297652552;21413,12023!GO:0032991;macromolecular complex;0.0231208919643697;21413,12023!GO:0010468;regulation of gene expression;0.0234789215736499;21413,12023!GO:0031323;regulation of cellular metabolic process;0.0248777568436999;21413,12023!GO:0014706;striated muscle development;0.0249088824294402;12023!GO:0007275;multicellular organismal development;0.0249298079320954;21413,12023!GO:0019222;regulation of metabolic process;0.0250795011298027;21413,12023!GO:0016070;RNA metabolic process;0.0255360665361971;21413,12023!GO:0003712;transcription cofactor activity;0.0255360665361971;21413!GO:0044446;intracellular organelle part;0.0261352402748791;21413,12023!GO:0044422;organelle part;0.0261352402748791;21413,12023!GO:0016564;transcription repressor activity;0.027089289112185;21413!GO:0007517;muscle development;0.0288363997579811;12023!GO:0008134;transcription factor binding;0.031875321855894;21413!GO:0010467;gene expression;0.0324322052668077;21413,12023!GO:0003676;nucleic acid binding;0.0334193720851622;21413,12023!GO:0032502;developmental process;0.0349805674959158;21413,12023!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.037496913465151;21413,12023!GO:0050794;regulation of cellular process;0.0424056232662334;21413,12023!GO:0009888;tissue development;0.0430751330345371;12023!|ontology_enrichment_celltype=CL:0000239!1.52e-20!6;CL:0000677!1.52e-20!6;CL:0000212!1.52e-20!6;CL:0000584!1.52e-20!6;CL:0002563!6.35e-18!9;CL:0002251!6.35e-18!9;CL:0000075!1.55e-17!7;CL:0000066!3.30e-12!25;CL:0000627!2.57e-11!3;CL:0000682!2.57e-11!3;CL:0002076!2.04e-10!15;CL:0000223!1.35e-07!20|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000160!2.04e-37!31;UBERON:0000344!5.17e-37!15;UBERON:0001242!6.08e-31!13;UBERON:0000060!6.08e-31!13;UBERON:0001262!6.08e-31!13;UBERON:0004786!6.08e-31!13;UBERON:0005409!1.84e-23!47;UBERON:0004923!3.24e-22!24;UBERON:0003350!6.35e-18!9;UBERON:0004808!6.35e-18!9;UBERON:0001277!6.35e-18!9;UBERON:0002108!9.58e-15!4;UBERON:0000485!1.63e-14!11;UBERON:0000331!1.06e-11!3;UBERON:0002116!1.06e-11!3;UBERON:0001204!1.06e-11!3;UBERON:0001168!1.06e-11!3;UBERON:0001007!1.99e-09!116;UBERON:0001555!1.99e-09!116;UBERON:0007026!1.99e-09!116;UBERON:0004119!3.37e-09!118;UBERON:0000925!3.37e-09!118;UBERON:0006595!3.37e-09!118;UBERON:0001962!1.31e-07!2;UBERON:0001961!1.31e-07!2;UBERON:0001744!1.31e-07!2;UBERON:0004921!1.66e-07!114|tfbs_overrepresentation_for_novel_motifs=0.354643,0.706384,0.330161,0.394491,0.227651,0.40827,0.495658,0.880357,0.154135,0.314043,0.453212,0.484001,0.449446,0.507558,0.24249,0,0.696644,0.62892,0.419123,0.902262,0.296085,0.713323,0.50668,0.226287,0.337218,0.534339,0.801525,0.428336,0.268347,0.319094,0.414842,0.796599,0.218674,0.113369,0.242923,0.281474,1.1396,0.480503,0.191662,0.167387,0.637027,0.419787,0.371854,0.684206,0.158271,0.998423,0.618203,0.443479,0.314152,0.745859,0.679429,0.560572,0.30602,0.937018,0.954342,0.514504,0.764433,0.471658,0.770972,0.512521,0.776777,0.569793,0.952934,0.668331,0.525334,1.68713,1.08987,1.43807,0.772155,1.29123,0.31262,0.151245,0.745723,0.987652,0.371787,0.107966,0.364033,0.607043,0.759798,0.299972,0.463363,0.713779,0.568383,0.858535,0.873141,0.0800961,0.439624,0.319367,0.623015,1.60001,1.15927,0.878077,0.809272,0.657661,0.188213,0.515495,0.444003,0.812053,0.618454,0.0816605,0.210602,0.796322,0.919715,0.680015,0.678976,0.419366,0.737915,0.439611,0.821842,0.297733,0.348012,0.921485,0.301014,0.458194,1.16629,0.222515,0.265919,0.398075,0.697928,0.207304,0.993019,0.647706,0.536114,0.606154,1.22022,0.763454,0.503569,0.802564,1.08836,0.235546,0.90286,0.387557,1.05894,1.30862,1.18781,0.177062,0.362565,0.421136,1.13883,1.96797,1.5682,1.09456,0.547855,0.806961,0.672593,1.07771,1.50578,1.92834,0.364791,0.649035,0.098204,0.369078,0.938577,0.178329,1.3067,1.01974,1.38016,0.253271,0.352329,0.362302,1.1483,0.872292,0.763895,0.345891,0.669337,0.519673,0.209556,1.21195,0.00844742|tfbs_overrepresentation_jaspar=MA0003.1;0.00972621,MA0004.1;0.394951,MA0006.1;0.238555,MA0007.1;0.38073,MA0009.1;0.82278,MA0014.1;0.0421798,MA0017.1;0.26239,MA0019.1;0.642876,MA0024.1;0.779446,MA0025.1;1.05446,MA0027.1;2.46647,MA0028.1;0.24786,MA0029.1;0.757957,MA0030.1;0.764448,MA0031.1;0.729293,MA0038.1;1.32237,MA0040.1;0.835181,MA0041.1;0.323687,MA0042.1;0.311486,MA0043.1;0.918718,MA0046.1;0.858391,MA0048.1;0.589612,MA0050.1;2.88159,MA0051.1;0.542972,MA0052.1;0.84317,MA0055.1;0.0198867,MA0056.1;0,MA0057.1;0.549903,MA0058.1;0.305206,MA0059.1;0.316585,MA0060.1;0.169058,MA0061.1;0.194456,MA0063.1;0,MA0066.1;0.523573,MA0067.1;1.16502,MA0068.1;0.077274,MA0069.1;0.843506,MA0070.1;0.833895,MA0071.1;1.10147,MA0072.1;0.825495,MA0073.1;0.00108891,MA0074.1;0.488775,MA0076.1;0.279739,MA0077.1;0.804033,MA0078.1;0.575205,MA0081.1;0.338098,MA0083.1;0.917931,MA0084.1;1.49188,MA0087.1;0.87515,MA0088.1;0.0492918,MA0089.1;0,MA0090.1;0.951436,MA0091.1;0.407455,MA0092.1;0.362847,MA0093.1;0.2553,MA0095.1;0,MA0098.1;0,MA0100.1;0.477594,MA0101.1;0.324888,MA0103.1;1.37229,MA0105.1;0.35523,MA0106.1;0.582805,MA0107.1;0.266586,MA0108.2;0.665343,MA0109.1;0,MA0111.1;0.375908,MA0113.1;0.555251,MA0114.1;0.19245,MA0115.1;0.921497,MA0116.1;0.238371,MA0117.1;0.88947,MA0119.1;0.868953,MA0122.1;0.909168,MA0124.1;1.11203,MA0125.1;1.03833,MA0130.1;0,MA0131.1;0.638414,MA0132.1;0,MA0133.1;0,MA0135.1;0.954884,MA0136.1;0.508047,MA0139.1;0.441109,MA0140.1;0.477483,MA0141.1;0.789442,MA0142.1;0.714976,MA0143.1;1.40057,MA0144.1;0.195095,MA0145.1;0.0543321,MA0146.1;0.0548413,MA0147.1;0.205697,MA0148.1;0.410398,MA0149.1;0.330018,MA0062.2;0.113962,MA0035.2;0.482026,MA0039.2;0.043355,MA0138.2;0.630612,MA0002.2;0.145685,MA0137.2;0.287486,MA0104.2;0.157347,MA0047.2;0.533516,MA0112.2;0.0543294,MA0065.2;0.44341,MA0150.1;0.380623,MA0151.1;0,MA0152.1;0.53362,MA0153.1;0.971406,MA0154.1;0.276788,MA0155.1;0.0631765,MA0156.1;0.763978,MA0157.1;0.683365,MA0158.1;0,MA0159.1;0.214506,MA0160.1;0.413266,MA0161.1;0,MA0162.1;0.0672805,MA0163.1;0.160428,MA0164.1;1.26737,MA0080.2;0.267388,MA0018.2;0.51781,MA0099.2;0.624421,MA0079.2;0.000746166,MA0102.2;1.5442,MA0258.1;0.180934,MA0259.1;0.571417,MA0442.1;0}} | ||
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|coexpression_dpi_cluster_scores_median=0,0.490499597182602,0.281033021353425,0.809179510524466,0.699591975664485,0.125727960712818,0.230662930292494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21483582178082,0.375929720448546,0.434999136142762,0.435055294398777,0.399379240739151,0.904762407607656,1.12546423055539,0.275753957844422,0,0,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152695919012311,0,0,0,0,0,0,0,0,0,0,0.255100480297832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803770988873759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56150092538788,0.313403641258937,0,0,0,0,0,0,0.384458647382152,0,0,0.0788034163803455,0,0.446791645189773,0.528597742754588,0.341404378058948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335643082588139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|gostat_on_MCL_coexpression=GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00365576547784741;21413,12023!GO:0045892;negative regulation of transcription, DNA-dependent;0.00365576547784741;21413,12023!GO:0016481;negative regulation of transcription;0.00365576547784741;21413,12023!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00365576547784741;21413,12023!GO:0042637;catagen;0.00365576547784741;12023!GO:0031324;negative regulation of cellular metabolic process;0.00365576547784741;21413,12023!GO:0009892;negative regulation of metabolic process;0.00400373694120981;21413,12023!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00456441499641985;21413,12023!GO:0005667;transcription factor complex;0.00456441499641985;21413,12023!GO:0006366;transcription from RNA polymerase II promoter;0.00456441499641985;21413,12023!GO:0044451;nucleoplasm part;0.00635773056744951;21413,12023!GO:0005654;nucleoplasm;0.00640120353318183;21413,12023!GO:0031981;nuclear lumen;0.00835083855626479;21413,12023!GO:0048820;hair follicle maturation;0.00863300937840844;12023!GO:0031974;membrane-enclosed lumen;0.00863300937840844;21413,12023!GO:0043233;organelle lumen;0.00863300937840844;21413,12023!GO:0048523;negative regulation of cellular process;0.0101479934017225;21413,12023!GO:0048519;negative regulation of biological process;0.011067884623619;21413,12023!GO:0044428;nuclear part;0.0128492932728319;21413,12023!GO:0045445;myoblast differentiation;0.0161890987055238;12023!GO:0022404;molting cycle process;0.0161890987055238;12023!GO:0001942;hair follicle development;0.0161890987055238;12023!GO:0022405;hair cycle process;0.0161890987055238;12023!GO:0042633;hair cycle;0.0161890987055238;12023!GO:0042303;molting cycle;0.0161890987055238;12023!GO:0003714;transcription corepressor activity;0.0202653465137349;21413!GO:0042692;muscle cell differentiation;0.0207599354898422;12023!GO:0048741;skeletal muscle fiber development;0.0207599354898422;12023!GO:0048747;muscle fiber development;0.0207599354898422;12023!GO:0043234;protein complex;0.020873176648202;21413,12023!GO:0006355;regulation of transcription, DNA-dependent;0.0230245297652552;21413,12023!GO:0006351;transcription, DNA-dependent;0.0230245297652552;21413,12023!GO:0021700;developmental maturation;0.0230245297652552;12023!GO:0032774;RNA biosynthetic process;0.0230245297652552;21413,12023!GO:0003677;DNA binding;0.0230245297652552;21413,12023!GO:0007519;skeletal muscle development;0.0230245297652552;12023!GO:0008544;epidermis development;0.0230245297652552;12023!GO:0045449;regulation of transcription;0.0230245297652552;21413,12023!GO:0003682;chromatin binding;0.0230245297652552;12023!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0230245297652552;21413,12023!GO:0007398;ectoderm development;0.0230245297652552;12023!GO:0006350;transcription;0.0230245297652552;21413,12023!GO:0032991;macromolecular complex;0.0231208919643697;21413,12023!GO:0010468;regulation of gene expression;0.0234789215736499;21413,12023!GO:0031323;regulation of cellular metabolic process;0.0248777568436999;21413,12023!GO:0014706;striated muscle development;0.0249088824294402;12023!GO:0007275;multicellular organismal development;0.0249298079320954;21413,12023!GO:0019222;regulation of metabolic process;0.0250795011298027;21413,12023!GO:0016070;RNA metabolic process;0.0255360665361971;21413,12023!GO:0003712;transcription cofactor activity;0.0255360665361971;21413!GO:0044446;intracellular organelle part;0.0261352402748791;21413,12023!GO:0044422;organelle part;0.0261352402748791;21413,12023!GO:0016564;transcription repressor activity;0.027089289112185;21413!GO:0007517;muscle development;0.0288363997579811;12023!GO:0008134;transcription factor binding;0.031875321855894;21413!GO:0010467;gene expression;0.0324322052668077;21413,12023!GO:0003676;nucleic acid binding;0.0334193720851622;21413,12023!GO:0032502;developmental process;0.0349805674959158;21413,12023!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.037496913465151;21413,12023!GO:0050794;regulation of cellular process;0.0424056232662334;21413,12023!GO:0009888;tissue development;0.0430751330345371;12023! | |||
|ontology_enrichment_celltype=CL:0000239!1.52e-20!6;CL:0000677!1.52e-20!6;CL:0000212!1.52e-20!6;CL:0000584!1.52e-20!6;CL:0002563!6.35e-18!9;CL:0002251!6.35e-18!9;CL:0000075!1.55e-17!7;CL:0000066!3.30e-12!25;CL:0000627!2.57e-11!3;CL:0000682!2.57e-11!3;CL:0002076!2.04e-10!15;CL:0000223!1.35e-07!20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.04e-37!31;UBERON:0000344!5.17e-37!15;UBERON:0001242!6.08e-31!13;UBERON:0000060!6.08e-31!13;UBERON:0001262!6.08e-31!13;UBERON:0004786!6.08e-31!13;UBERON:0005409!1.84e-23!47;UBERON:0004923!3.24e-22!24;UBERON:0003350!6.35e-18!9;UBERON:0004808!6.35e-18!9;UBERON:0001277!6.35e-18!9;UBERON:0002108!9.58e-15!4;UBERON:0000485!1.63e-14!11;UBERON:0000331!1.06e-11!3;UBERON:0002116!1.06e-11!3;UBERON:0001204!1.06e-11!3;UBERON:0001168!1.06e-11!3;UBERON:0001007!1.99e-09!116;UBERON:0001555!1.99e-09!116;UBERON:0007026!1.99e-09!116;UBERON:0004119!3.37e-09!118;UBERON:0000925!3.37e-09!118;UBERON:0006595!3.37e-09!118;UBERON:0001962!1.31e-07!2;UBERON:0001961!1.31e-07!2;UBERON:0001744!1.31e-07!2;UBERON:0004921!1.66e-07!114 | |||
|tfbs_overrepresentation_for_novel_motifs=0.354643,0.706384,0.330161,0.394491,0.227651,0.40827,0.495658,0.880357,0.154135,0.314043,0.453212,0.484001,0.449446,0.507558,0.24249,0,0.696644,0.62892,0.419123,0.902262,0.296085,0.713323,0.50668,0.226287,0.337218,0.534339,0.801525,0.428336,0.268347,0.319094,0.414842,0.796599,0.218674,0.113369,0.242923,0.281474,1.1396,0.480503,0.191662,0.167387,0.637027,0.419787,0.371854,0.684206,0.158271,0.998423,0.618203,0.443479,0.314152,0.745859,0.679429,0.560572,0.30602,0.937018,0.954342,0.514504,0.764433,0.471658,0.770972,0.512521,0.776777,0.569793,0.952934,0.668331,0.525334,1.68713,1.08987,1.43807,0.772155,1.29123,0.31262,0.151245,0.745723,0.987652,0.371787,0.107966,0.364033,0.607043,0.759798,0.299972,0.463363,0.713779,0.568383,0.858535,0.873141,0.0800961,0.439624,0.319367,0.623015,1.60001,1.15927,0.878077,0.809272,0.657661,0.188213,0.515495,0.444003,0.812053,0.618454,0.0816605,0.210602,0.796322,0.919715,0.680015,0.678976,0.419366,0.737915,0.439611,0.821842,0.297733,0.348012,0.921485,0.301014,0.458194,1.16629,0.222515,0.265919,0.398075,0.697928,0.207304,0.993019,0.647706,0.536114,0.606154,1.22022,0.763454,0.503569,0.802564,1.08836,0.235546,0.90286,0.387557,1.05894,1.30862,1.18781,0.177062,0.362565,0.421136,1.13883,1.96797,1.5682,1.09456,0.547855,0.806961,0.672593,1.07771,1.50578,1.92834,0.364791,0.649035,0.098204,0.369078,0.938577,0.178329,1.3067,1.01974,1.38016,0.253271,0.352329,0.362302,1.1483,0.872292,0.763895,0.345891,0.669337,0.519673,0.209556,1.21195,0.00844742 | |||
|tfbs_overrepresentation_jaspar=MA0003.1;0.00972621,MA0004.1;0.394951,MA0006.1;0.238555,MA0007.1;0.38073,MA0009.1;0.82278,MA0014.1;0.0421798,MA0017.1;0.26239,MA0019.1;0.642876,MA0024.1;0.779446,MA0025.1;1.05446,MA0027.1;2.46647,MA0028.1;0.24786,MA0029.1;0.757957,MA0030.1;0.764448,MA0031.1;0.729293,MA0038.1;1.32237,MA0040.1;0.835181,MA0041.1;0.323687,MA0042.1;0.311486,MA0043.1;0.918718,MA0046.1;0.858391,MA0048.1;0.589612,MA0050.1;2.88159,MA0051.1;0.542972,MA0052.1;0.84317,MA0055.1;0.0198867,MA0056.1;0,MA0057.1;0.549903,MA0058.1;0.305206,MA0059.1;0.316585,MA0060.1;0.169058,MA0061.1;0.194456,MA0063.1;0,MA0066.1;0.523573,MA0067.1;1.16502,MA0068.1;0.077274,MA0069.1;0.843506,MA0070.1;0.833895,MA0071.1;1.10147,MA0072.1;0.825495,MA0073.1;0.00108891,MA0074.1;0.488775,MA0076.1;0.279739,MA0077.1;0.804033,MA0078.1;0.575205,MA0081.1;0.338098,MA0083.1;0.917931,MA0084.1;1.49188,MA0087.1;0.87515,MA0088.1;0.0492918,MA0089.1;0,MA0090.1;0.951436,MA0091.1;0.407455,MA0092.1;0.362847,MA0093.1;0.2553,MA0095.1;0,MA0098.1;0,MA0100.1;0.477594,MA0101.1;0.324888,MA0103.1;1.37229,MA0105.1;0.35523,MA0106.1;0.582805,MA0107.1;0.266586,MA0108.2;0.665343,MA0109.1;0,MA0111.1;0.375908,MA0113.1;0.555251,MA0114.1;0.19245,MA0115.1;0.921497,MA0116.1;0.238371,MA0117.1;0.88947,MA0119.1;0.868953,MA0122.1;0.909168,MA0124.1;1.11203,MA0125.1;1.03833,MA0130.1;0,MA0131.1;0.638414,MA0132.1;0,MA0133.1;0,MA0135.1;0.954884,MA0136.1;0.508047,MA0139.1;0.441109,MA0140.1;0.477483,MA0141.1;0.789442,MA0142.1;0.714976,MA0143.1;1.40057,MA0144.1;0.195095,MA0145.1;0.0543321,MA0146.1;0.0548413,MA0147.1;0.205697,MA0148.1;0.410398,MA0149.1;0.330018,MA0062.2;0.113962,MA0035.2;0.482026,MA0039.2;0.043355,MA0138.2;0.630612,MA0002.2;0.145685,MA0137.2;0.287486,MA0104.2;0.157347,MA0047.2;0.533516,MA0112.2;0.0543294,MA0065.2;0.44341,MA0150.1;0.380623,MA0151.1;0,MA0152.1;0.53362,MA0153.1;0.971406,MA0154.1;0.276788,MA0155.1;0.0631765,MA0156.1;0.763978,MA0157.1;0.683365,MA0158.1;0,MA0159.1;0.214506,MA0160.1;0.413266,MA0161.1;0,MA0162.1;0.0672805,MA0163.1;0.160428,MA0164.1;1.26737,MA0080.2;0.267388,MA0018.2;0.51781,MA0099.2;0.624421,MA0079.2;0.000746166,MA0102.2;1.5442,MA0258.1;0.180934,MA0259.1;0.571417,MA0442.1;0 | |||
}} |
Latest revision as of 15:52, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr11:21501144..21501147,+ | p@chr11:21501144..21501147 + |
Mm9::chr11:48715513..48715546,- | p@chr11:48715513..48715546 - |
Mm9::chr11:6129264..6129275,- | p@chr11:6129264..6129275 - |
Mm9::chr11:9019226..9019233,+ | p@chr11:9019226..9019233 + |
Mm9::chr11:9019282..9019299,+ | p@chr11:9019282..9019299 + |
Mm9::chr15:77490274..77490279,- | p@chr15:77490274..77490279 - |
Mm9::chr18:73975357..73975368,- | p3@Me2 |
Mm9::chr19:53102858..53102869,- | p@chr19:53102858..53102869 - |
Mm9::chr9:31720903..31720918,- | p2@Barx2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | 0.00365576547784741 |
GO:0045892 | negative regulation of transcription, DNA-dependent | 0.00365576547784741 |
GO:0016481 | negative regulation of transcription | 0.00365576547784741 |
GO:0045934 | negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.00365576547784741 |
GO:0042637 | catagen | 0.00365576547784741 |
GO:0031324 | negative regulation of cellular metabolic process | 0.00365576547784741 |
GO:0009892 | negative regulation of metabolic process | 0.00400373694120981 |
GO:0006357 | regulation of transcription from RNA polymerase II promoter | 0.00456441499641985 |
GO:0005667 | transcription factor complex | 0.00456441499641985 |
GO:0006366 | transcription from RNA polymerase II promoter | 0.00456441499641985 |
GO:0044451 | nucleoplasm part | 0.00635773056744951 |
GO:0005654 | nucleoplasm | 0.00640120353318183 |
GO:0031981 | nuclear lumen | 0.00835083855626479 |
GO:0048820 | hair follicle maturation | 0.00863300937840844 |
GO:0031974 | membrane-enclosed lumen | 0.00863300937840844 |
GO:0043233 | organelle lumen | 0.00863300937840844 |
GO:0048523 | negative regulation of cellular process | 0.0101479934017225 |
GO:0048519 | negative regulation of biological process | 0.011067884623619 |
GO:0044428 | nuclear part | 0.0128492932728319 |
GO:0045445 | myoblast differentiation | 0.0161890987055238 |
GO:0022404 | molting cycle process | 0.0161890987055238 |
GO:0001942 | hair follicle development | 0.0161890987055238 |
GO:0022405 | hair cycle process | 0.0161890987055238 |
GO:0042633 | hair cycle | 0.0161890987055238 |
GO:0042303 | molting cycle | 0.0161890987055238 |
GO:0003714 | transcription corepressor activity | 0.0202653465137349 |
GO:0042692 | muscle cell differentiation | 0.0207599354898422 |
GO:0048741 | skeletal muscle fiber development | 0.0207599354898422 |
GO:0048747 | muscle fiber development | 0.0207599354898422 |
GO:0043234 | protein complex | 0.020873176648202 |
GO:0006355 | regulation of transcription, DNA-dependent | 0.0230245297652552 |
GO:0006351 | transcription, DNA-dependent | 0.0230245297652552 |
GO:0021700 | developmental maturation | 0.0230245297652552 |
GO:0032774 | RNA biosynthetic process | 0.0230245297652552 |
GO:0003677 | DNA binding | 0.0230245297652552 |
GO:0007519 | skeletal muscle development | 0.0230245297652552 |
GO:0008544 | epidermis development | 0.0230245297652552 |
GO:0045449 | regulation of transcription | 0.0230245297652552 |
GO:0003682 | chromatin binding | 0.0230245297652552 |
GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.0230245297652552 |
GO:0007398 | ectoderm development | 0.0230245297652552 |
GO:0006350 | transcription | 0.0230245297652552 |
GO:0032991 | macromolecular complex | 0.0231208919643697 |
GO:0010468 | regulation of gene expression | 0.0234789215736499 |
GO:0031323 | regulation of cellular metabolic process | 0.0248777568436999 |
GO:0014706 | striated muscle development | 0.0249088824294402 |
GO:0007275 | multicellular organismal development | 0.0249298079320954 |
GO:0019222 | regulation of metabolic process | 0.0250795011298027 |
GO:0016070 | RNA metabolic process | 0.0255360665361971 |
GO:0003712 | transcription cofactor activity | 0.0255360665361971 |
GO:0044446 | intracellular organelle part | 0.0261352402748791 |
GO:0044422 | organelle part | 0.0261352402748791 |
GO:0016564 | transcription repressor activity | 0.027089289112185 |
GO:0007517 | muscle development | 0.0288363997579811 |
GO:0008134 | transcription factor binding | 0.031875321855894 |
GO:0010467 | gene expression | 0.0324322052668077 |
GO:0003676 | nucleic acid binding | 0.0334193720851622 |
GO:0032502 | developmental process | 0.0349805674959158 |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.037496913465151 |
GO:0050794 | regulation of cellular process | 0.0424056232662334 |
GO:0009888 | tissue development | 0.0430751330345371 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.52e-20 | 6 |
gut absorptive cell | 1.52e-20 | 6 |
absorptive cell | 1.52e-20 | 6 |
enterocyte | 1.52e-20 | 6 |
intestinal epithelial cell | 6.35e-18 | 9 |
epithelial cell of alimentary canal | 6.35e-18 | 9 |
columnar/cuboidal epithelial cell | 1.55e-17 | 7 |
epithelial cell | 3.30e-12 | 25 |
transporting cell | 2.57e-11 | 3 |
M cell of gut | 2.57e-11 | 3 |
endo-epithelial cell | 2.04e-10 | 15 |
endodermal cell | 1.35e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.04e-37 | 31 |
mucosa | 5.17e-37 | 15 |
intestinal mucosa | 6.08e-31 | 13 |
anatomical wall | 6.08e-31 | 13 |
wall of intestine | 6.08e-31 | 13 |
gastrointestinal system mucosa | 6.08e-31 | 13 |
gastrointestinal system | 1.84e-23 | 47 |
organ component layer | 3.24e-22 | 24 |
epithelium of mucosa | 6.35e-18 | 9 |
gastrointestinal system epithelium | 6.35e-18 | 9 |
intestinal epithelium | 6.35e-18 | 9 |
small intestine | 9.58e-15 | 4 |
simple columnar epithelium | 1.63e-14 | 11 |
ileal mucosa | 1.06e-11 | 3 |
ileum | 1.06e-11 | 3 |
mucosa of small intestine | 1.06e-11 | 3 |
wall of small intestine | 1.06e-11 | 3 |
digestive system | 1.99e-09 | 116 |
digestive tract | 1.99e-09 | 116 |
primitive gut | 1.99e-09 | 116 |
endoderm-derived structure | 3.37e-09 | 118 |
endoderm | 3.37e-09 | 118 |
presumptive endoderm | 3.37e-09 | 118 |
gut-associated lymphoid tissue | 1.31e-07 | 2 |
mucosa-associated lymphoid tissue | 1.31e-07 | 2 |
lymphoid tissue | 1.31e-07 | 2 |
subdivision of digestive tract | 1.66e-07 | 114 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.00972621 |
MA0004.1 | 0.394951 |
MA0006.1 | 0.238555 |
MA0007.1 | 0.38073 |
MA0009.1 | 0.82278 |
MA0014.1 | 0.0421798 |
MA0017.1 | 0.26239 |
MA0019.1 | 0.642876 |
MA0024.1 | 0.779446 |
MA0025.1 | 1.05446 |
MA0027.1 | 2.46647 |
MA0028.1 | 0.24786 |
MA0029.1 | 0.757957 |
MA0030.1 | 0.764448 |
MA0031.1 | 0.729293 |
MA0038.1 | 1.32237 |
MA0040.1 | 0.835181 |
MA0041.1 | 0.323687 |
MA0042.1 | 0.311486 |
MA0043.1 | 0.918718 |
MA0046.1 | 0.858391 |
MA0048.1 | 0.589612 |
MA0050.1 | 2.88159 |
MA0051.1 | 0.542972 |
MA0052.1 | 0.84317 |
MA0055.1 | 0.0198867 |
MA0056.1 | 0 |
MA0057.1 | 0.549903 |
MA0058.1 | 0.305206 |
MA0059.1 | 0.316585 |
MA0060.1 | 0.169058 |
MA0061.1 | 0.194456 |
MA0063.1 | 0 |
MA0066.1 | 0.523573 |
MA0067.1 | 1.16502 |
MA0068.1 | 0.077274 |
MA0069.1 | 0.843506 |
MA0070.1 | 0.833895 |
MA0071.1 | 1.10147 |
MA0072.1 | 0.825495 |
MA0073.1 | 0.00108891 |
MA0074.1 | 0.488775 |
MA0076.1 | 0.279739 |
MA0077.1 | 0.804033 |
MA0078.1 | 0.575205 |
MA0081.1 | 0.338098 |
MA0083.1 | 0.917931 |
MA0084.1 | 1.49188 |
MA0087.1 | 0.87515 |
MA0088.1 | 0.0492918 |
MA0089.1 | 0 |
MA0090.1 | 0.951436 |
MA0091.1 | 0.407455 |
MA0092.1 | 0.362847 |
MA0093.1 | 0.2553 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.477594 |
MA0101.1 | 0.324888 |
MA0103.1 | 1.37229 |
MA0105.1 | 0.35523 |
MA0106.1 | 0.582805 |
MA0107.1 | 0.266586 |
MA0108.2 | 0.665343 |
MA0109.1 | 0 |
MA0111.1 | 0.375908 |
MA0113.1 | 0.555251 |
MA0114.1 | 0.19245 |
MA0115.1 | 0.921497 |
MA0116.1 | 0.238371 |
MA0117.1 | 0.88947 |
MA0119.1 | 0.868953 |
MA0122.1 | 0.909168 |
MA0124.1 | 1.11203 |
MA0125.1 | 1.03833 |
MA0130.1 | 0 |
MA0131.1 | 0.638414 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.954884 |
MA0136.1 | 0.508047 |
MA0139.1 | 0.441109 |
MA0140.1 | 0.477483 |
MA0141.1 | 0.789442 |
MA0142.1 | 0.714976 |
MA0143.1 | 1.40057 |
MA0144.1 | 0.195095 |
MA0145.1 | 0.0543321 |
MA0146.1 | 0.0548413 |
MA0147.1 | 0.205697 |
MA0148.1 | 0.410398 |
MA0149.1 | 0.330018 |
MA0062.2 | 0.113962 |
MA0035.2 | 0.482026 |
MA0039.2 | 0.043355 |
MA0138.2 | 0.630612 |
MA0002.2 | 0.145685 |
MA0137.2 | 0.287486 |
MA0104.2 | 0.157347 |
MA0047.2 | 0.533516 |
MA0112.2 | 0.0543294 |
MA0065.2 | 0.44341 |
MA0150.1 | 0.380623 |
MA0151.1 | 0 |
MA0152.1 | 0.53362 |
MA0153.1 | 0.971406 |
MA0154.1 | 0.276788 |
MA0155.1 | 0.0631765 |
MA0156.1 | 0.763978 |
MA0157.1 | 0.683365 |
MA0158.1 | 0 |
MA0159.1 | 0.214506 |
MA0160.1 | 0.413266 |
MA0161.1 | 0 |
MA0162.1 | 0.0672805 |
MA0163.1 | 0.160428 |
MA0164.1 | 1.26737 |
MA0080.2 | 0.267388 |
MA0018.2 | 0.51781 |
MA0099.2 | 0.624421 |
MA0079.2 | 0.000746166 |
MA0102.2 | 1.5442 |
MA0258.1 | 0.180934 |
MA0259.1 | 0.571417 |
MA0442.1 | 0 |