FFCP PHASE1:Hg19::chr10:120967120..120967134,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=2869 | |EntrezGene=2869 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=4544 | |HGNC=4544 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q5T060,P34947 | |UniProt=Q5T060,P34947 | ||
|association_with_transcript=19bp_to_ENST00000369106,ENST00000392870_5end | |association_with_transcript=19bp_to_ENST00000369106,ENST00000392870_5end | ||
|cluster_id=chr10:120967120..120967134,+ | |||
|description=CAGE_peak_1_at_GRK5_5end | |description=CAGE_peak_1_at_GRK5_5end | ||
|id=chr10:120967120..120967134,+ | |id=chr10:120967120..120967134,+ | ||
Latest revision as of 17:21, 16 September 2015
| Short description: | p1@GRK5 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_GRK5_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 19bp_to_ENST00000369106, ENST00000392870_5end |
| EntrezGene: | GRK5 |
| HGNC: | 4544 |
| UniProt: | Q5T060P34947 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@GRK5 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endothelial cell of vascular tree | 3.34e-12 | 24 |
| mesodermal cell | 5.99e-11 | 121 |
| endothelial cell | 8.05e-10 | 36 |
| blood vessel endothelial cell | 7.68e-09 | 18 |
| embryonic blood vessel endothelial progenitor cell | 7.68e-09 | 18 |
| smooth muscle cell | 3.93e-08 | 43 |
| smooth muscle myoblast | 3.93e-08 | 43 |
| meso-epithelial cell | 8.78e-08 | 45 |
| vascular associated smooth muscle cell | 1.49e-07 | 32 |
| muscle cell | 4.16e-07 | 55 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| vasculature | 1.08e-22 | 78 |
| vascular system | 1.08e-22 | 78 |
| vessel | 1.33e-20 | 68 |
| circulatory system | 2.66e-19 | 112 |
| cardiovascular system | 1.39e-18 | 109 |
| epithelial tube open at both ends | 6.51e-18 | 59 |
| blood vessel | 6.51e-18 | 59 |
| blood vasculature | 6.51e-18 | 59 |
| vascular cord | 6.51e-18 | 59 |
| splanchnic layer of lateral plate mesoderm | 8.47e-17 | 83 |
Showing 1 to 10 of 34 entries
