FFCP PHASE1:Hg19::chr6:32145101..32145134,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:32145101..32145134,-
|short_description=p5@AGPAT1
|description=CAGE_peak_5_at_AGPAT1_5end
|association_with_transcript=0bp_to_ENST00000375104,ENST000004907...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10554 | |EntrezGene=10554 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=324 | |HGNC=324 | ||
|TSSclassifier=strong | |||
|UniProt=Q99943 | |UniProt=Q99943 | ||
|association_with_transcript=0bp_to_ENST00000375104,ENST00000490711,uc003oag.2_5end | |||
|cluster_id=chr6:32145101..32145134,- | |||
|description=CAGE_peak_5_at_AGPAT1_5end | |||
|id=chr6:32145101..32145134,- | |||
|ontology_enrichment_celltype=CL:0000133!2.56e-12!59;CL:0000221!6.96e-12!71;CL:0002319!7.76e-10!25;CL:0000333!3.90e-08!41;CL:0000066!5.70e-08!254;CL:0000147!6.70e-08!14;CL:0000075!1.46e-07!27;CL:0000710!5.24e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0002319;7.25e-12;25!CL:0000148;4.81e-09;10!CL:0000147;5.92e-09;14!CL:0000075;1.21e-07;27!CL:0000243;3.20e-07;15!CL:0000125;3.20e-07;15!CL:0000095;3.29e-07;17!CL:0002322;3.38e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,1.65e-13,59;CL:0000221,1.40e-12,72;CL:0002319,7.32e-12,25;CL:0000333,1.92e-10,41;CL:0000148,2.63e-09,10;CL:0000541,2.63e-09,10;CL:0000147,2.90e-09,14;CL:0000075,1.11e-07,27;CL:0002322,4.32e-07,5;CL:0000095,4.43e-07,17;CL:0000123,4.43e-07,17;CL:0000243,6.33e-07,15;CL:0000125,6.33e-07,15;CL:0000030,6.33e-07,15;CL:0000339,6.33e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000133;1.00e-07;59!CL:0000339;3.20e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.61e-07,22;DOID:2994,7.61e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000924!2.62e-08!173;UBERON:0006601!2.62e-08!173;UBERON:0004121!3.47e-07!169 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.73e-09,171;UBERON:0000924,6.73e-09,171;UBERON:0006601,6.73e-09,171 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.281908808191942,0,0.446961094427288,0,0,0,0.783556884599516,0.245733936501509,0.697801167972428,0.655324116390517,0.791300934685361,2.10402800032079,1.98838425436749,0.672325146451775,1.20538905604795,0,0.487932798790507,1.47745269692145,0.816002764977012,2.19418305034661,1.14494394852423,1.23186982565596,1.12988375635323,0.458480434487708,0.410502947249729,0.708397031823113,0,0.383829398097213,0,0,0.90361775633475,0.369754010166788,0.92960640696362,1.70603078984906,0.587200878669695,0,0.200544447470142,0.434021741431704,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,0,0,1.32171328579026,0,0.526768169550154,0.590129310341499,0,0.205601498999509,0,0,0,0,0.334231370655521,0.294605907474837,0,0.270803863765016,0,0,0.164437904603676,0.829050053357545,0.289803085735052,0,0.267540828089713,0,0.226618685395132,0.383220493601921,0,0,0,0,0,0.301150238155546,0.511946444617674,0,0.236777252044017,0,0.403213486449465,0.267440195783507,0.434473211648397,0,0,0.255725123687061,0.361439152384566,2.00535164254356,0.579386075843295,1.5905718941022,2.43317435151318,1.98523116044542,1.77383517970051,1.05401742831751,0.654895377488563,0.728590576585084,0.741568885568859,0,0.174129737299267,0.132957960518865,0.238490624305342,1.71598473234038,0.371457501329565,0,0,0.347140501607594,0,0,0,0.835979866147242,2.06733407335463,1.06729878806013,0.66944122552934,0.805658634218294,0.760272105718513,0.976248230192678,0.367663080345869,0.81014194788176,0.803697554556718,0.673588117878509,0.225222960966644,0,0.949265659568129,0.549605231791222,0,0,0.436094052142534,0,0.506522046658319,0.397227542439656,1.14734648299525,0.354668382198357,0,0,0.74000264525148,0.622422070799533,0.134710672069688,0.817309515567294,0.302714855289863,0,1.17160715916898,0.624320153660641,1.71141546463335,0,0.587172493218824,0.485618833104395,0.561803226808994,1.02077085627447,0.982674538494144,0.516628905878827,1.18800285728205,0.247266929278557,0,0,0.841680569770331,1.25118519871964,0.554128230968366,0,0,0.751190294532984,0.453728732640084,1.07633781413317,0.213557388818567,0.211931901159562,0.900273288253207,0.103052529238439,0.515281080091258,0.37223371266318,0.843881661206331,0.389748020644795,0.757301322732344,0.552299391853796,0.323292113637624,0.355009592516614,0.806016785821122,0.339121184620975,0.193260853163297,0,0,3.04934265323988,3.5783037446801,3.02104251460748,2.38420426535352,3.5324919122588,2.55484151353081,0,0.643240938192885,0,1.39310378409594,2.16563844500876,0.709840800239063,0.505754070234305,0,0.220587945464788,0.435758888184812,0,0.674156540800822,0.392442930250692,0.38474715694639,0,0,0.8231480226628,0,0,0,0,1.7658523976586,1.10689594688802,0.857839051492628,0.219500570817251,0,0.703702806881416,0.648119116109707,0.325808305310325,0,1.44331342025273,1.04337364477569,1.17408694235822,0.866198686566443,0,0.570762456703795,0,0,0.492434012174795,0,0,0,0.335964256397719,0.567100388969546,1.07470227243418,1.45316969256981,1.15014803749563,0.985326475791887,0.352193736052904,0,0,0.12624243342638,1.71444314588856,3.81988425558278,2.34434894420094,3.4214489204541,1.85089486865982,0.901029173531752,2.00078502841405,0.336393253036082,0.43596006883328,0.51336800074665,0.387815147273333,7.15312891703765,0.845302752556,1.59562869950922,1.04007436911366,1.80045161983499,0,0.532844358032199,0.57191197463259,2.17048642156577,1.64648067356154,0.325736184293735,0.355391948742546,2.37585561880029,0,0,0.099972991182057,1.2162378064119,0,0,0.479249710983165,0,0,0.579125226670317,0.61642896765115,0.358121926479791,0.224170287987055,0,0.215627574859517,0,2.28685161800217,1.30139853857622,0.773288812777695,1.67516265334349,2.55175500661265,0,0,0,2.57652132610194,2.00068208423871,0.813795071099207,0.831883446123229,0.713715955188647,0.946214490203608,0.468565659970853,0.601892199455438,0,1.03473071292505,1.32845119707087,0.184369168541703,0.434418072340414,3.52442083432933,1.37257369524342,0.206768026122887,0,0,0.303127571446259,0,1.81434175997808,0.992431231275107,0.153461973288062,0.561320188866147,0.512556597022804,1.53512174720011,0.160853921143607,0,0.462629081407967,0.887808626565635,0.657017248110473,0,0.348631135379878,1.93375119346596,0.601519410909855,0.828728900423067,0.574072240823034,0.364182336013434,0.524497659837696,4.06079651616671,0.847168708148562,0.784349769176855,2.92278449306521,0.949964660035881,1.13733384070897,0,0.431831832204279,0,1.35473218771926,3.01013864312912,0.509752546090077,0,1.34324852833307,0,0.261435451024901,0.769350375349168,2.95213181129735,2.60302715731442,0.103041011647722,0.640986253728404,0.165018999841176,2.87132768998086,1.30012049207304,0,3.963499449977,0,0.307007349452259,0.275673144969061,1.50388342815583,0.870100163485371,0.767039646744908,1.24644849905432,0.16528491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| ||
|short_description=p5@AGPAT1 | |||
}} | }} |
Latest revision as of 01:58, 18 September 2015
Short description: | p5@AGPAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_AGPAT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000375104, ENST00000490711, uc003oag.2_5end |
EntrezGene: | AGPAT1 |
HGNC: | 324 |
UniProt: | Q99943 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 1.65e-13 | 59 |
ectodermal cell | 1.40e-12 | 72 |
neural cell | 7.32e-12 | 25 |
migratory neural crest cell | 1.92e-10 | 41 |
melanocyte | 2.63e-09 | 10 |
melanoblast | 2.63e-09 | 10 |
pigment cell | 2.90e-09 | 14 |
columnar/cuboidal epithelial cell | 1.11e-07 | 27 |
embryonic stem cell | 4.32e-07 | 5 |
neuron associated cell | 4.43e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 4.43e-07 | 17 |
glial cell (sensu Vertebrata) | 6.33e-07 | 15 |
glial cell | 6.33e-07 | 15 |
glioblast | 6.33e-07 | 15 |
glioblast (sensu Vertebrata) | 6.33e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.73e-09 | 171 |
ectoderm | 6.73e-09 | 171 |
presumptive ectoderm | 6.73e-09 | 171 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.61e-07 | 22 |
germ cell cancer | 7.61e-07 | 22 |