FFCP PHASE1:Hg19::chr7:100808304..100808313,-: Difference between revisions
From FANTOM5_SSTAR
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|id=chr7:100808304..100808313,-
|short_description=p5@VGF
|description=CAGE_peak_5_at_VGF_5end
|association_with_transcript=81bp_to_ENST00000445482_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7425 | |EntrezGene=7425 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12684 | |HGNC=12684 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=81bp_to_ENST00000445482_5end | |||
|cluster_id=chr7:100808304..100808313,- | |||
|coexpression_cluster_id=C206 | |||
|description=CAGE_peak_5_at_VGF_5end | |||
|id=chr7:100808304..100808313,- | |||
|ontology_enrichment_celltype=CL:0002553!5.58e-08!1;CL:0000167!9.44e-08!1;CL:0000164!9.44e-08!1;CL:0000502!9.44e-08!1;CL:0000172!9.44e-08!1;CL:0000173!9.44e-08!1;CL:0002351!9.44e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000138;2.45e-12;6!CL:0000153;1.12e-08;9!CL:0000447;1.12e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.45e-12,6;CL:0000138,2.45e-12,6;CL:0000153,1.12e-08,9;CL:0000447,1.12e-08,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!1.95e-14!2;DOID:169!6.09e-10!6;DOID:3371!4.57e-08!1;DOID:4549!4.57e-08!1;DOID:5861!4.57e-08!1;DOID:6496!4.57e-08!1;DOID:4430!9.44e-08!1;DOID:4960!1.48e-07!1;DOID:0070004!1.48e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1909;8.99e-131;2!DOID:3371;2.39e-66;1!DOID:4549;2.39e-66;1!DOID:5861;2.39e-66;1!DOID:6496;2.39e-66;1!DOID:201;2.45e-12;6!DOID:0060100;2.45e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,8.99e-131,2;DOID:3371,2.39e-66,1;DOID:4549,2.39e-66,1;DOID:5861,2.39e-66,1;DOID:6496,2.39e-66,1;DOID:201,2.45e-12,6;DOID:0060100,2.45e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0002780!4.62e-30!41;UBERON:0001890!4.62e-30!41;UBERON:0006240!4.62e-30!41;UBERON:0003080!2.71e-29!42;UBERON:0001869!4.32e-29!32;UBERON:0001893!2.76e-27!34;UBERON:0002791!5.31e-24!33;UBERON:0002020!2.99e-23!34;UBERON:0003528!2.99e-23!34;UBERON:0001950!1.77e-22!20;UBERON:0000956!4.61e-22!25;UBERON:0000203!4.61e-22!25;UBERON:0001049!6.11e-21!57;UBERON:0005068!6.11e-21!57;UBERON:0006241!6.11e-21!57;UBERON:0007135!6.11e-21!57;UBERON:0002619!2.12e-20!22;UBERON:0002616!3.84e-20!59;UBERON:0003056!2.14e-19!61;UBERON:0000073!4.37e-19!94;UBERON:0001016!4.37e-19!94;UBERON:0000955!5.01e-19!69;UBERON:0006238!5.01e-19!69;UBERON:0001017!8.99e-18!82;UBERON:0005743!8.29e-17!86;UBERON:0003075!5.81e-13!86;UBERON:0007284!5.81e-13!86;UBERON:0002346!2.92e-12!90;UBERON:0001872!4.66e-12!5;UBERON:0004121!1.07e-11!169;UBERON:0000924!2.46e-11!173;UBERON:0006601!2.46e-11!173;UBERON:0000200!8.80e-10!6;UBERON:0000033!2.00e-09!123;UBERON:0007023!4.19e-09!115;UBERON:0000153!7.54e-09!129;UBERON:0007811!7.54e-09!129;UBERON:0001874!5.22e-08!1;UBERON:0002581!7.76e-08!1;UBERON:0001871!1.75e-07!7;UBERON:0001882!2.04e-07!1;UBERON:0005403!2.04e-07!1;UBERON:0002022!2.47e-07!1;UBERON:0000369!2.72e-07!4;UBERON:0002435!2.72e-07!4;UBERON:0000204!2.72e-07!4;UBERON:0010082!2.72e-07!4;UBERON:0007190!3.17e-07!1;UBERON:0002420!7.89e-07!9;UBERON:0007245!7.89e-07!9;UBERON:0010009!7.89e-07!9;UBERON:0010011!7.89e-07!9;UBERON:0000454!7.89e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;3.27e-23;3!UBERON:0004755;3.27e-23;3!UBERON:0001003;1.13e-18;15!UBERON:0007376;1.13e-18;15!UBERON:0010371;6.23e-10;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,3.27e-23,3;UBERON:0004755,3.27e-23,3;UBERON:0001003,1.13e-18,15;UBERON:0007376,1.13e-18,15;UBERON:0007383,1.13e-18,15;UBERON:0002097,1.47e-07,41;UBERON:0002199,7.52e-07,46;UBERON:0002416,7.52e-07,46 | |||
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|short_description=p5@VGF | |||
}} | }} |
Latest revision as of 17:10, 24 September 2015
Short description: | p5@VGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VGF_5end |
Coexpression cluster: | C206_melanoma_somatostatinoma_nonsmall_small_neuroblastoma_smallcell_pituitary |
Association with transcript: | 81bp_to_ENST00000445482_5end |
EntrezGene: | VGF |
HGNC: | 12684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.45e-12 | 6 |
chondrocyte | 2.45e-12 | 6 |
GAG secreting cell | 1.12e-08 | 9 |
carbohydrate secreting cell | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 3.27e-23 | 3 |
skeletal tissue | 3.27e-23 | 3 |
skin epidermis | 1.13e-18 | 15 |
outer epithelium | 1.13e-18 | 15 |
enveloping layer of ectoderm | 1.13e-18 | 15 |
skin of body | 1.47e-07 | 41 |
integument | 7.52e-07 | 46 |
integumental system | 7.52e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
melanoma | 8.99e-131 | 2 |
chondrosarcoma | 2.39e-66 | 1 |
extraosseous chondrosarcoma | 2.39e-66 | 1 |
myxoid chondrosarcoma | 2.39e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 2.39e-66 | 1 |
connective tissue cancer | 2.45e-12 | 6 |
musculoskeletal system cancer | 2.45e-12 | 6 |