FFCP PHASE1:Hg19::chr7:150945663..150945692,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:150945663..150945692,-
|short_description=p5@SMARCD3
|description=CAGE_peak_5_at_SMARCD3_5end
|association_with_transcript=39bp_to_ENST00000485610_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6604 | |EntrezGene=6604 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11108 | |HGNC=11108 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=39bp_to_ENST00000485610_5end | |||
|cluster_id=chr7:150945663..150945692,- | |||
|description=CAGE_peak_5_at_SMARCD3_5end | |||
|id=chr7:150945663..150945692,- | |||
|ontology_enrichment_celltype=CL:0000055!4.80e-12!180 | |||
|ontology_enrichment_celltype_v019=CL:0002603;1.00e-10;3!CL:0002575;4.68e-08;2!CL:0000047;6.96e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,9.46e-11,3;CL:0000047,3.56e-10,8;CL:0002575,4.79e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.04e-23!86;UBERON:0001017!1.09e-22!82;UBERON:0000073!2.00e-22!94;UBERON:0001016!2.00e-22!94;UBERON:0002346!1.99e-20!90;UBERON:0003075!4.75e-19!86;UBERON:0007284!4.75e-19!86;UBERON:0002616!1.53e-18!59;UBERON:0001049!7.73e-18!57;UBERON:0005068!7.73e-18!57;UBERON:0006241!7.73e-18!57;UBERON:0007135!7.73e-18!57;UBERON:0000955!1.29e-17!69;UBERON:0006238!1.29e-17!69;UBERON:0001893!9.52e-17!34;UBERON:0002791!2.33e-16!33;UBERON:0001869!1.04e-15!32;UBERON:0002020!1.90e-15!34;UBERON:0003528!1.90e-15!34;UBERON:0000475!1.35e-14!365;UBERON:0003056!9.46e-14!61;UBERON:0000956!2.04e-13!25;UBERON:0000203!2.04e-13!25;UBERON:0000924!2.25e-13!173;UBERON:0006601!2.25e-13!173;UBERON:0002780!6.13e-13!41;UBERON:0001890!6.13e-13!41;UBERON:0006240!6.13e-13!41;UBERON:0000033!1.43e-12!123;UBERON:0000153!1.50e-12!129;UBERON:0007811!1.50e-12!129;UBERON:0002619!2.11e-12!22;UBERON:0003080!2.48e-12!42;UBERON:0004121!2.57e-12!169;UBERON:0001950!4.39e-11!20;UBERON:0007023!7.51e-11!115;UBERON:0000481!3.60e-10!347;UBERON:0000119!5.35e-10!312;UBERON:0000468!3.19e-09!659;UBERON:0000483!4.54e-09!309;UBERON:0000025!4.48e-07!194;UBERON:0003076!6.57e-07!15;UBERON:0003057!6.57e-07!15;UBERON:0000477!7.32e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;7.09e-09;6!UBERON:0000922;1.30e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-11,81;UBERON:0001016,6.15e-10,89;UBERON:0002037,6.85e-09,6;UBERON:0006215,6.85e-09,6;UBERON:0003075,1.05e-07,82;UBERON:0007284,1.05e-07,82;UBERON:0002346,3.63e-07,86;UBERON:0004121,4.38e-07,171;UBERON:0000924,4.38e-07,171;UBERON:0006601,4.38e-07,171;UBERON:0007625,9.15e-07,11 | |||
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| ||
|short_description=p5@SMARCD3 | |||
}} | }} |
Latest revision as of 06:09, 17 September 2015
Short description: | p5@SMARCD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMARCD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 39bp_to_ENST00000485610_5end |
EntrezGene: | SMARCD3 |
HGNC: | 11108 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 9.46e-11 | 3 |
neuronal stem cell | 3.56e-10 | 8 |
central nervous system pericyte | 4.79e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.42e-11 | 81 |
nervous system | 6.15e-10 | 89 |
cerebellum | 6.85e-09 | 6 |
rhombic lip | 6.85e-09 | 6 |
neural plate | 1.05e-07 | 82 |
presumptive neural plate | 1.05e-07 | 82 |
neurectoderm | 3.63e-07 | 86 |
ectoderm-derived structure | 4.38e-07 | 171 |
ectoderm | 4.38e-07 | 171 |
presumptive ectoderm | 4.38e-07 | 171 |
pigment epithelium of eye | 9.15e-07 | 11 |