FFCP PHASE1:Hg19::chr7:3284005..3284016,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:3284005..3284016,-
|short_description=p@chr7:3284005..3284016,-
|description=CAGE_peak_at_chr7:3284005..3284016,-
|association_with_transcript=NA
|EntrezG...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr7:3284005..3284016,- | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr7:3284005..3284016,- | |||
|id=chr7:3284005..3284016,- | |||
|ontology_enrichment_celltype=CL:0002379!1.31e-08!1;CL:0002574!4.41e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0002379;5.05e-34;1!CL:0000243;3.02e-18;15!CL:0000125;3.02e-18;15!CL:0000095;2.05e-16;17!CL:0000322;2.59e-12;3!CL:0002319;8.62e-12;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002379,7.06e-34,1;CL:0000243,2.54e-18,15;CL:0000125,2.54e-18,15;CL:0000030,2.54e-18,15;CL:0000339,2.54e-18,15;CL:0000095,1.75e-16,17;CL:0000123,1.75e-16,17;CL:0000322,2.59e-12,3;CL:0002319,7.72e-12,25;CL:0000133,2.94e-09,59;CL:0000221,1.02e-07,72;CL:0000333,1.06e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0006238;1.07e-27;10!CL:0000339;3.02e-18;15!CL:0000133;1.06e-07;59 | |||
|ontology_enrichment_disease=DOID:3093!6.09e-10!11;DOID:3620!1.31e-08!1;DOID:3565!1.31e-08!1;DOID:0050686!1.57e-08!137;DOID:0050619!2.02e-08!1;DOID:1357!2.02e-08!1;DOID:2394!5.29e-08!14;DOID:0050615!3.47e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:3093;2.84e-44;11!DOID:3620;5.05e-34;1!DOID:3565;5.05e-34;1!DOID:3910;9.07e-18;2!DOID:5093;1.44e-09;4!DOID:1612;1.44e-09;4!DOID:3908;6.55e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.27e-44,11;DOID:3620,7.06e-34,1;DOID:3565,7.06e-34,1;DOID:3910,9.07e-18,2;DOID:5093,1.70e-09,4;DOID:1612,1.70e-09,4;DOID:0050686,5.05e-09,137;DOID:3908,6.55e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002118!8.14e-13!5;UBERON:0004532!8.14e-13!5;UBERON:0001764!2.02e-08!1;UBERON:0001825!2.02e-08!1;UBERON:0006834!3.10e-08!1;UBERON:0000464!2.48e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;9.07e-18;2!UBERON:0002173;9.07e-18;2!UBERON:0002186;9.07e-18;2!UBERON:0004821;2.59e-12;3!UBERON:0007499;2.59e-12;3!UBERON:0003215;2.59e-12;3!UBERON:0010368;2.59e-12;3!UBERON:0009911;2.59e-12;3!UBERON:0002299;2.59e-12;3!UBERON:0006524;2.59e-12;3!UBERON:0008874;2.59e-12;3!UBERON:0002169;2.59e-12;3!UBERON:0004894;2.59e-12;3!UBERON:0009856;1.44e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,9.07e-18,2;UBERON:0002173,9.07e-18,2;UBERON:0002186,9.07e-18,2;UBERON:0004821,2.59e-12,3;UBERON:0003215,2.59e-12,3;UBERON:0010368,2.59e-12,3;UBERON:0009911,2.59e-12,3;UBERON:0002299,2.59e-12,3;UBERON:0006524,2.59e-12,3;UBERON:0008874,2.59e-12,3;UBERON:0002169,2.59e-12,3;UBERON:0004894,2.59e-12,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0,0,0,0,0,0,8.79510669518531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76675467895698,1.882851233622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,1.6468607378872,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0,0,0,0,0,0,8.79510669518531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76675467895698,1.882851233622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,1.6468607378872,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0.181848659202559,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr7:3284005..3284016,- | |||
}} | }} |
Latest revision as of 09:30, 31 July 2015
Short description: | p@chr7:3284005..3284016, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:3284005..3284016, - |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 7.06e-34 | 1 |
glial cell (sensu Vertebrata) | 2.54e-18 | 15 |
glial cell | 2.54e-18 | 15 |
glioblast | 2.54e-18 | 15 |
glioblast (sensu Vertebrata) | 2.54e-18 | 15 |
neuron associated cell | 1.75e-16 | 17 |
neuron associated cell (sensu Vertebrata) | 1.75e-16 | 17 |
pneumocyte | 2.59e-12 | 3 |
neural cell | 7.72e-12 | 25 |
neurectodermal cell | 2.94e-09 | 59 |
ectodermal cell | 1.02e-07 | 72 |
migratory neural crest cell | 1.06e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 9.07e-18 | 2 |
alveolar duct | 9.07e-18 | 2 |
bronchiole | 9.07e-18 | 2 |
pulmonary alveolus epithelium | 2.59e-12 | 3 |
alveolus | 2.59e-12 | 3 |
pulmonary lobule | 2.59e-12 | 3 |
lobule | 2.59e-12 | 3 |
alveolus of lung | 2.59e-12 | 3 |
alveolar system | 2.59e-12 | 3 |
pulmonary acinus | 2.59e-12 | 3 |
alveolar sac | 2.59e-12 | 3 |
alveolar wall | 2.59e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.27e-44 | 11 |
central nervous system cancer | 7.06e-34 | 1 |
meningioma | 7.06e-34 | 1 |
lung adenocarcinoma | 9.07e-18 | 2 |
thoracic cancer | 1.70e-09 | 4 |
breast cancer | 1.70e-09 | 4 |
organ system cancer | 5.05e-09 | 137 |
non-small cell lung carcinoma | 6.55e-08 | 5 |