FFCP PHASE1:Hg19::chr18:12255308..12255318,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr18:12255308..12255318,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_at_chr18:12255308..12255318,- | |||
|id=chr18:12255308..12255318,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000138;7.67e-18;6!CL:0000153;2.19e-12;9!CL:0000447;2.19e-12;9!CL:0000327;5.55e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,7.67e-18,6;CL:0000138,7.67e-18,6;CL:0000153,2.19e-12,9;CL:0000447,2.19e-12,9;CL:0000327,5.55e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!1.60e-09!1;DOID:4549!1.60e-09!1;DOID:5861!1.60e-09!1;DOID:6496!1.60e-09!1;DOID:6193!2.82e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;9.37e-99;1!DOID:4549;9.37e-99;1!DOID:5861;9.37e-99;1!DOID:6496;9.37e-99;1!DOID:201;7.67e-18;6!DOID:0060100;7.67e-18;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,9.37e-99,1;DOID:4549,9.37e-99,1;DOID:5861,9.37e-99,1;DOID:6496,9.37e-99,1;DOID:201,7.67e-18,6;DOID:0060100,7.67e-18,6 | |||
|ontology_enrichment_uberon=UBERON:0002619!3.75e-82!22;UBERON:0001869!2.38e-80!32;UBERON:0001950!2.84e-79!20;UBERON:0001893!1.41e-75!34;UBERON:0000956!2.33e-72!25;UBERON:0000203!2.33e-72!25;UBERON:0002791!1.43e-69!33;UBERON:0002780!2.49e-69!41;UBERON:0001890!2.49e-69!41;UBERON:0006240!2.49e-69!41;UBERON:0003080!1.22e-67!42;UBERON:0002020!1.71e-67!34;UBERON:0003528!1.71e-67!34;UBERON:0001049!2.81e-49!57;UBERON:0005068!2.81e-49!57;UBERON:0006241!2.81e-49!57;UBERON:0007135!2.81e-49!57;UBERON:0002616!1.60e-47!59;UBERON:0003056!7.05e-46!61;UBERON:0000200!7.69e-46!6;UBERON:0000955!7.96e-44!69;UBERON:0006238!7.96e-44!69;UBERON:0001017!2.48e-40!82;UBERON:0005743!2.47e-38!86;UBERON:0003075!3.22e-35!86;UBERON:0007284!3.22e-35!86;UBERON:0000073!1.94e-34!94;UBERON:0001016!1.94e-34!94;UBERON:0002346!1.63e-33!90;UBERON:0000033!6.69e-26!123;UBERON:0007023!1.06e-25!115;UBERON:0002021!1.20e-24!5;UBERON:0000153!1.52e-24!129;UBERON:0007811!1.52e-24!129;UBERON:0001871!2.60e-23!7;UBERON:0002771!5.04e-23!3;UBERON:0004121!8.68e-18!169;UBERON:0000924!2.69e-17!173;UBERON:0006601!2.69e-17!173;UBERON:0001870!6.75e-17!2;UBERON:0001872!4.75e-15!5;UBERON:0000025!1.03e-13!194;UBERON:0000064!2.04e-10!219;UBERON:0004111!2.59e-10!241;UBERON:0002702!2.04e-09!1;UBERON:0002581!2.22e-09!1;UBERON:0007190!2.40e-09!1;UBERON:0000477!3.69e-09!286;UBERON:0003112!3.88e-09!1;UBERON:0000032!3.88e-09!1;UBERON:0005253!3.88e-09!1;UBERON:0003128!3.88e-09!1;UBERON:0002241!3.88e-09!1;UBERON:0001703!3.88e-09!1;UBERON:0004761!3.88e-09!1;UBERON:0009617!3.88e-09!1;UBERON:0002022!5.75e-09!1;UBERON:0002902!6.22e-09!1;UBERON:0009899!6.22e-09!1;UBERON:0001882!9.17e-09!1;UBERON:0005403!9.17e-09!1;UBERON:0000483!3.50e-08!309;UBERON:0000119!4.58e-08!312;UBERON:0000475!3.94e-07!365;UBERON:0000349!6.56e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;4.27e-34;3!UBERON:0004755;4.27e-34;3!UBERON:0001872;5.15e-21;5!UBERON:0001474;7.18e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,4.27e-34,3;UBERON:0004755,4.27e-34,3;UBERON:0001872,5.15e-21,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0,0,0,0,5.11885534810702,0,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0.41023272848151,0.504143392443436,0.276629009856872,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.742913430802341,0,1.03343398250592,0.697573912132975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789273282754189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:12255308..12255318,- | |||
}} |
Latest revision as of 23:39, 25 July 2015
Short description: | p@chr18:12255308..12255318, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:12255308..12255318, - |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 7.67e-18 | 6 |
chondrocyte | 7.67e-18 | 6 |
GAG secreting cell | 2.19e-12 | 9 |
carbohydrate secreting cell | 2.19e-12 | 9 |
extracellular matrix secreting cell | 5.55e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 4.27e-34 | 3 |
skeletal tissue | 4.27e-34 | 3 |
parietal lobe | 5.15e-21 | 5 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 9.37e-99 | 1 |
extraosseous chondrosarcoma | 9.37e-99 | 1 |
myxoid chondrosarcoma | 9.37e-99 | 1 |
extraskeletal myxoid chondrosarcoma | 9.37e-99 | 1 |
connective tissue cancer | 7.67e-18 | 6 |
musculoskeletal system cancer | 7.67e-18 | 6 |