FFCP PHASE1:Hg19::chr1:33168390..33168404,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81493 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28897 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H7C4 | |||
|association_with_transcript=-29bp_to_ENST00000373484,NM_001161708,NM_030786,uc001bvt.2,uc010ohl.1_5end | |||
|cluster_id=chr1:33168390..33168404,- | |||
|description=CAGE_peak_2_at_SYNC_5end | |||
|id=chr1:33168390..33168404,- | |||
|ontology_enrichment_celltype=CL:0000055!2.74e-25!180;CL:0000057!7.69e-13!75;CL:0000222!1.67e-10!119;CL:0000680!3.34e-10!57;CL:0000056!3.34e-10!57;CL:0000355!3.34e-10!57;CL:0000220!4.48e-09!246;CL:0000187!4.83e-09!54;CL:0000192!4.87e-09!42;CL:0000514!4.87e-09!42;CL:0000183!6.36e-09!59;CL:0002321!1.14e-08!248;CL:0000393!6.02e-08!60;CL:0000211!6.02e-08!60;CL:0000359!7.82e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000134;9.67e-08;55!CL:0002334;1.02e-07;12!CL:0000359;7.63e-07;32!CL:0000048;8.86e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,5.45e-09,43;CL:0000514,5.45e-09,43;CL:0000680,5.70e-08,58;CL:0000056,5.70e-08,58;CL:0000355,5.70e-08,58;CL:0002334,1.58e-07,12;CL:0000057,5.49e-07,76;CL:0000359,6.09e-07,32;CL:0000136,8.46e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!8.00e-14!83;UBERON:0002329!8.00e-14!83;UBERON:0003077!8.00e-14!83;UBERON:0003059!8.00e-14!83;UBERON:0007282!8.00e-14!83;UBERON:0009618!8.00e-14!83;UBERON:0007285!8.00e-14!83;UBERON:0000475!2.89e-11!365;UBERON:0000486!3.60e-10!82;UBERON:0004290!5.79e-10!70;UBERON:0002385!7.94e-10!63;UBERON:0001015!7.94e-10!63;UBERON:0000383!7.94e-10!63;UBERON:0001134!1.75e-09!61;UBERON:0002036!1.75e-09!61;UBERON:0003082!1.75e-09!61;UBERON:0005256!4.72e-09!143;UBERON:0002049!2.21e-07!79;UBERON:0007798!2.21e-07!79;UBERON:0003102!3.06e-07!95;UBERON:0002100!3.99e-07!216;UBERON:0000483!4.03e-07!309;UBERON:0004573!4.04e-07!33;UBERON:0004571!4.04e-07!33;UBERON:0000119!4.85e-07!312;UBERON:0000477!9.50e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.68e-08;6!UBERON:0002358;3.68e-08;6!UBERON:0003684;3.68e-08;6!UBERON:0001178;3.68e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.12e-08,6;UBERON:0002358,2.12e-08,6;UBERON:0003684,2.12e-08,6;UBERON:0001178,2.12e-08,6;UBERON:0007524,3.29e-08,73;UBERON:0002329,4.84e-08,71;UBERON:0003059,4.84e-08,71;UBERON:0007282,4.84e-08,71;UBERON:0004290,4.84e-08,71;UBERON:0009618,4.84e-08,71;UBERON:0003077,8.05e-08,72;UBERON:0007285,8.05e-08,72;UBERON:0001134,1.04e-07,62;UBERON:0002036,1.04e-07,62;UBERON:0003082,1.04e-07,62;UBERON:0000486,1.45e-07,83;UBERON:0002385,3.01e-07,64;UBERON:0001015,3.01e-07,64;UBERON:0000383,3.01e-07,64;UBERON:0007503,3.03e-07,78 | |||
|phase1_expression=2.18014055124668,1.49870366723688,1.69145284915165,2.00146596706261,4.02264984984559,0.872338524100369,0,0,0.261185628199839,0.245733936501509,0,0.218441372130172,0.263766978228454,1.36142988256051,1.32558950291166,1.34465029290355,1.80808358407193,1.46062018077475,0.975865597581014,1.47745269692145,1.02000345622126,0.313454721478088,1.14494394852423,1.09499540058307,1.12988375635323,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.0843174571537,0.50133791063589,2.02785126545153,0.795285947051099,0.486634870302636,0.378139268656271,0.886917589850256,1.14185221401064,0.523916301990851,0.364295288292542,0.370784442784429,0.324547393654683,0.174129737299267,0.398873881556595,0,0,0,0.596287222100115,0,0,0,0,0,0,0.775250277507987,1.06729878806013,0,0.402829317109147,0,0.976248230192678,0.367663080345869,0.81014194788176,0.535798369704479,0.898117490504679,0.450445921933289,0,0,0.732806975721629,0,0,0,1.49091585508596,1.01304409331664,0.794455084879313,0.860509862246441,3.19201543978521,1.12135520028461,0,0.74000264525148,0.933633106199299,0.404132016209064,0.326923806226917,0.605429710579726,0.576175924479999,0,0.312160076830321,0,0.298897361103602,0.23486899728753,1.13311061057692,0.702254033511242,0.61246251376468,0.491337269247072,0.826606249406124,2.37600571456411,0,0,1.43723628363248,0.841680569770331,0.500474079487857,0.831192346452549,2.63386572528503,2.75839016219118,0.300476117813194,0.226864366320042,0.358779271377724,0.640672166455702,1.48352330811693,0.900273288253207,1.95799805553034,0,1.11670113798954,0.675105328965065,1.75386609290158,1.7670364197088,2.11714766877288,0.646584227275248,0.355009592516614,3.42557133973977,2.03472710772585,1.15956511897978,0.818238361772504,1.43402297694502,0,0,0,0,0,0,0,4.5026865673502,2.76269842704961,1.85747171212792,0,0.591534000199219,0.505754070234305,0.723033089650446,0.55146986366197,0,0,0.269662616320329,0.392442930250692,0.38474715694639,0,1.40241773803446,0.4115740113314,2.94017422771084,0,0,0,0,0,2.57351715447788,1.20725313949488,0,0.201057944823262,0.185176890317059,0.325808305310325,0,0,0.579652024875384,0.821860859650752,0.577465791044295,0.462985512576611,0,0,0,0.246217006087397,0.936017060556951,0.743155811443641,1.87467667973554,2.35174979478403,1.13420077793909,0,0.290633938513962,1.15014803749563,0,0,0.414656231081544,0.288239906833923,1.00993946741104,1.46045156871989,1.90994212779139,1.17217447210047,0,1.85089486865982,0.901029173531752,1.14330573052231,0.560655421726804,0,0.1466765716419,1.16344544182,3.57656445851882,0.845302752556,2.12750493267896,4.16029747645464,0,1.41849132023278,0.266422179016099,0.285955987316295,0,0,1.30294473717494,0.710783897485092,0,4.22015127883421,4.35766729300147,3.39908170018994,0,0,0,2.15662369942424,2.29723871668228,1.42636905040718,1.30303176000821,1.02738161275192,3.22309733831812,0,0,0,0,0.76228387266739,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0.981531933753119,0,0.271265023699736,2.07970861530807,2.14114786556594,1.10391690523754,1.40569697991256,0.902838299183157,0,1.03473071292505,0,2.02806085395873,0.60818530127658,0.195801157462741,0,0,0,0,0,0,0.907170879989041,1.24053903909388,0.61384789315225,3.92924132206303,2.17836553734692,1.53512174720011,2.57366273829772,4.45254199334973,0.462629081407967,1.06537035187876,0.98552587216571,2.07701771673448,1.27831416305955,0,2.00506470303285,0,0.918515585316854,1.27463817604702,2.75361271414791,0,0.462092022626489,0,0,0.527758144464379,0,0.340187410553031,0.647747748306418,0,1.35473218771926,0.501689773854853,0,0,0.447749509444357,0,0,0.512900250232778,0,0,0.206082023295445,1.28197250745681,0.82509499920588,0.574265537996172,1.30012049207304,1.6068392984416,0.386682873168488,0.308097234229289,0.460511024178389,0.413509717453592,0.751941714077915,0.870100163485371,0.596586391912706,0.356128142586949,0.661139661443912,0.960950336825531,0.255225424989168,0.10115778085555,1.39453664789186,0.62962469366128,0.6970372701606,0.308033580176089,1.06461206063404,0,2.22389062924704,2.28999818787186,1.116475108079,2.53103539774981,2.66882271493355,0.511795582622668,0,0.95460974377781,2.35484592059769,1.43897966066652,1.64722217841633,1.53156123049392,1.2130948894399,0,2.10629228119491,0.48763373908959,0.487426979262569,1.05650146756755,1.77449884830381,1.55545975149084,0,0.551365343546124,1.99031692572366,1.31535265576129,0.578775534266688,1.31178950409327,1.21746226177622,0,0.281695602532241,0.430234056612155,0.687743287091848,0,0,1.68886108238131,0.987884678879706,0,1.74967360122491,0.288666338176536,0.670302275535787,0,0.0941438007767792,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0.213648142254946,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0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| |||
|short_description=p2@SYNC | |||
}} |
Latest revision as of 15:43, 17 September 2015
Short description: | p2@SYNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYNC_5end |
Coexpression cluster: | NA |
Association with transcript: | -29bp_to_ENST00000373484, NM_001161708, NM_030786, uc001bvt.2, uc010ohl.1_5end |
EntrezGene: | SYNC |
HGNC: | 28897 |
UniProt: | Q9H7C4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 5.45e-09 | 43 |
smooth muscle myoblast | 5.45e-09 | 43 |
muscle precursor cell | 5.70e-08 | 58 |
myoblast | 5.70e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.70e-08 | 58 |
preadipocyte | 1.58e-07 | 12 |
fibroblast | 5.49e-07 | 76 |
vascular associated smooth muscle cell | 6.09e-07 | 32 |
fat cell | 8.46e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.12e-08 | 6 |
peritoneum | 2.12e-08 | 6 |
abdominal cavity | 2.12e-08 | 6 |
visceral peritoneum | 2.12e-08 | 6 |
dense mesenchyme tissue | 3.29e-08 | 73 |
somite | 4.84e-08 | 71 |
presomitic mesoderm | 4.84e-08 | 71 |
presumptive segmental plate | 4.84e-08 | 71 |
dermomyotome | 4.84e-08 | 71 |
trunk paraxial mesoderm | 4.84e-08 | 71 |
paraxial mesoderm | 8.05e-08 | 72 |
presumptive paraxial mesoderm | 8.05e-08 | 72 |
skeletal muscle tissue | 1.04e-07 | 62 |
striated muscle tissue | 1.04e-07 | 62 |
myotome | 1.04e-07 | 62 |
multilaminar epithelium | 1.45e-07 | 83 |
muscle tissue | 3.01e-07 | 64 |
musculature | 3.01e-07 | 64 |
musculature of body | 3.01e-07 | 64 |
epithelial vesicle | 3.03e-07 | 78 |