FFCP PHASE1:Hg19::chr20:45997938..45997948,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr20:45997938..45997948,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr20:45997938..45997948,- | |||
|id=chr20:45997938..45997948,- | |||
|ontology_enrichment_celltype=CL:0002322!3.56e-59!5;CL:0000039!3.55e-27!7;CL:0000586!3.55e-27!7;CL:0000540!2.78e-18!6;CL:0000031!2.78e-18!6;CL:0000404!2.78e-18!6;CL:0000047!7.18e-14!8;CL:0000148!3.04e-11!10;CL:0000541!3.04e-11!10;CL:0000147!3.50e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.24e-71;5!CL:0000039;1.19e-32;7!CL:0000586;1.19e-32;7!CL:0002321;7.59e-24;15!CL:0000540;6.94e-22;6!CL:0000404;6.94e-22;6!CL:0000148;2.07e-13;10!CL:0000147;9.52e-10;14!CL:0000710;5.56e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.67e-71,5;CL:0000039,1.24e-32,7;CL:0000586,1.24e-32,7;CL:0000540,7.19e-22,6;CL:0000031,7.19e-22,6;CL:0000404,7.19e-22,6;CL:0000047,1.41e-16,8;CL:0000148,1.99e-13,10;CL:0000541,1.99e-13,10;CL:0000147,9.24e-10,14;CL:0000133,4.09e-08,59;CL:0000710,5.45e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.21e-35;10!UBERON:0005564;3.21e-35;10!CL:0000031;6.94e-22;6 | |||
|ontology_enrichment_disease=DOID:3095!8.94e-19!22;DOID:2994!8.94e-19!22;DOID:8552!1.09e-12!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.45e-16;22!DOID:2994;4.45e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.59e-16,22;DOID:2994,4.59e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!7.92e-24!8;UBERON:0003135!2.01e-17!11;UBERON:0000991!6.21e-14!21;UBERON:0009196!6.21e-14!21;UBERON:0009117!6.21e-14!21;UBERON:0005564!6.21e-14!21;UBERON:0004176!2.68e-13!22;UBERON:0003101!7.81e-09!22;UBERON:0000079!7.81e-09!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.25e-28;8!UBERON:0003135;6.13e-21;11!UBERON:0000991;7.68e-17;21!UBERON:0000922;3.02e-14;49!UBERON:0003101;1.24e-10;22!UBERON:0000079;1.24e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.30e-28,8;UBERON:0003135,6.29e-21,11;UBERON:0000991,7.94e-17,21;UBERON:0009196,7.94e-17,21;UBERON:0009117,7.94e-17,21;UBERON:0005564,7.94e-17,21;UBERON:0004176,4.59e-16,22;UBERON:0003101,1.26e-10,22;UBERON:0000079,1.26e-10,22;UBERON:0002323,1.12e-07,46;UBERON:0003133,2.36e-07,48;UBERON:0004458,3.35e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9292128497371,13.38550660047,9.06312754382243,3.31715376049185,7.82194637714448,5.83963774521328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.10861964167073,6.32681408347275,7.47792608452533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02799419604189,0.98339014767326,0,1.83579893535567,14.4297398843403,8.27054095813604,5.51556586443225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:45997938..45997948,- | |||
}} |
Latest revision as of 14:47, 28 July 2015
Short description: | p@chr20:45997938..45997948, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:45997938..45997948, - |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.67e-71 | 5 |
germ line cell | 1.24e-32 | 7 |
germ cell | 1.24e-32 | 7 |
neuron | 7.19e-22 | 6 |
neuroblast | 7.19e-22 | 6 |
electrically signaling cell | 7.19e-22 | 6 |
neuronal stem cell | 1.41e-16 | 8 |
melanocyte | 1.99e-13 | 10 |
melanoblast | 1.99e-13 | 10 |
pigment cell | 9.24e-10 | 14 |
neurectodermal cell | 4.09e-08 | 59 |
neurecto-epithelial cell | 5.45e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
testis | 1.30e-28 | 8 |
male reproductive organ | 6.29e-21 | 11 |
gonad | 7.94e-17 | 21 |
indifferent external genitalia | 7.94e-17 | 21 |
indifferent gonad | 7.94e-17 | 21 |
gonad primordium | 7.94e-17 | 21 |
external genitalia | 4.59e-16 | 22 |
male organism | 1.26e-10 | 22 |
male reproductive system | 1.26e-10 | 22 |
body cavity | 1.12e-07 | 46 |
reproductive organ | 2.36e-07 | 48 |
body cavity or lining | 3.35e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.59e-16 | 22 |
germ cell cancer | 4.59e-16 | 22 |