FFCP PHASE1:Hg19::chr3:100499042..100499055,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:100499042..100499055,- | |||
|coexpression_cluster_id=C404 | |||
|description=CAGE_peak_at_chr3:100499042..100499055,- | |||
|id=chr3:100499042..100499055,- | |||
|ontology_enrichment_celltype=CL:0000057!1.21e-14!75;CL:0000055!3.32e-10!180;CL:0000153!1.92e-08!9;CL:0000447!1.92e-08!9;CL:0002620!2.99e-08!23;CL:0000667!8.01e-07!6;CL:0000058!8.01e-07!6;CL:0000138!8.01e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;5.74e-12;9!CL:0000447;5.74e-12;9!CL:0000197;5.46e-10;6!CL:0000098;5.46e-10;6!CL:0002167;5.46e-10;6!CL:0000214;8.19e-10;3!CL:0000135;2.05e-09;3!CL:0000388;2.05e-09;3!CL:0000515;3.68e-09;3!CL:0000499;7.59e-08;28!CL:0002591;1.74e-07;1!CL:0000569;2.89e-07;4!CL:0000327;3.29e-07;15!CL:0000056;4.47e-07;4!CL:1000306;4.47e-07;4!CL:0002547;4.47e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,5.14e-12,9;CL:0000447,5.14e-12,9;CL:0000197,6.89e-10,6;CL:0000098,6.89e-10,6;CL:0002167,6.89e-10,6;CL:0000214,8.38e-10,3;CL:0000135,1.97e-09,3;CL:0000388,1.97e-09,3;CL:0000499,7.14e-08,28;CL:0002591,2.17e-07,1;CL:0000569,2.18e-07,4;CL:0000011,2.18e-07,4;CL:0000327,3.09e-07,15;CL:1000306,3.49e-07,4;CL:0002547,3.49e-07,4;CL:0000515,5.22e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004874;4.88e-08;1!CL:0000011;2.89e-07;4!CL:0000515;4.47e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;4.88e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,5.22e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.65e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;8.19e-10;3!UBERON:0007616;8.19e-10;3!UBERON:0002217;8.19e-10;3!UBERON:0002018;8.19e-10;3!UBERON:0007846;2.05e-09;3!UBERON:0000043;2.05e-09;3!UBERON:0007845;2.05e-09;3!UBERON:0000989;4.88e-08;1!UBERON:0008811;4.88e-08;1!UBERON:0002135;1.74e-07;1!UBERON:0002171;1.74e-07;1!UBERON:0006518;1.74e-07;1!UBERON:0008949;1.74e-07;1!UBERON:0000101;1.74e-07;1!UBERON:0002167;1.74e-07;1!UBERON:0004797;4.47e-07;4!UBERON:0000415;4.47e-07;4!UBERON:0007240;4.47e-07;4!UBERON:0005742;4.47e-07;4!UBERON:0005734;4.47e-07;4!UBERON:0004664;4.47e-07;4!UBERON:0004663;4.47e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,8.38e-10,3;UBERON:0007616,8.38e-10,3;UBERON:0002217,8.38e-10,3;UBERON:0002018,8.38e-10,3;UBERON:0007846,1.97e-09,3;UBERON:0000043,1.97e-09,3;UBERON:0007845,1.97e-09,3;UBERON:0004797,1.65e-08,7;UBERON:0000989,4.89e-08,1;UBERON:0008811,4.89e-08,1;UBERON:0006258,4.89e-08,1;UBERON:0005876,4.89e-08,1;UBERON:0004874,4.89e-08,1;UBERON:0002171,1.15e-07,1;UBERON:0006518,1.15e-07,1;UBERON:0008949,1.15e-07,1;UBERON:0000101,1.15e-07,1;UBERON:0002167,1.15e-07,1;UBERON:0002135,2.31e-07,1;UBERON:0000415,3.49e-07,4;UBERON:0007240,3.49e-07,4;UBERON:0005742,3.49e-07,4;UBERON:0005734,3.49e-07,4;UBERON:0004664,3.49e-07,4;UBERON:0004663,3.49e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97583067623023,0.50133791063589,2.89693037921647,0.795285947051099,0.973269740605272,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0.838998872419812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,1.85372853138506,1.14734648299525,0,0,1.06748995729705,0.49333509683432,0,0,0,0,0,0,0.624320153660641,0,0.298897361103602,0.23486899728753,0.323745888736263,0,0,0,0.206651562351531,0,0.741800787835671,0,0,0,0.250237039743928,0,0,0.612975591598039,0.300476117813194,0.113432183160021,0.358779271377724,0.427114777637135,0.423863802319124,0.300091096084402,0,1.03056216018252,0.37223371266318,0.168776332241266,0,0,0,0.646584227275248,0.355009592516614,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0.288732895522148,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,1.59259437334337,1.02738161275192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,1.24782516918484,2.14114786556594,1.10391690523754,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0.214840489736547,0,0,0.0890320356467374,0,0,0,0,0,2.20368642781448,0,0,0,0,0,0,0,0,0,0,0,0,1.56989728039846,0,0,0,0,0,0,0,1.70599442741899,0,0,0,1.13008116620243,0,0,0.438450885253763,0.578775534266688,0,0,0,0,0,0,0,0,2.32218398827431,11.5253212535966,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0,0.796991953004279,0.552567831062295,0,0,0,3.11039587661807,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11712960508902,0.916641696046735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,2.77402930751307,0.947015026375446,0.251567901752575,0.889811221596536,2.51724075236616,1.81477108515887,0.15543720058278,0.73927574994817,0,0,0.155262956876259,0.829412415681711,1.59505028734797,0.521745061811734,0.150257608997218,0,1.22061219961398,0.181848659202559,0.322231671127465,0,0.398095888698616,1.20008329398946,0,0,0,0,0,0,0,0,0,0.895444205407437,0,0,0.530067437837643,0.192914038270915,0.337884881306145,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.705351887381368,0.3062454773532,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,1.1441462864015,0,0,0,0,0,0,0.327543835020193,0,0,0,0,0,0,0,3.96968942711435,0,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.285906176706625,0,0,0,0,0.414432328326074,0.3414369541879,2.76503864725637,0,0.354996002191696,0.426067023795788,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,1.0580536810308,1.48798007266701,2.31087814315709,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0,0.0636471582781649,0,0,0.684466602170562,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr3:100499042..100499055,- | |||
}} |
Latest revision as of 13:39, 29 July 2015
Short description: | p@chr3:100499042..100499055, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:100499042..100499055, - |
Coexpression cluster: | C404_Fibroblast_mesenchymal_Synoviocyte_Smooth_basal_mesodermal_Chondrocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 5.14e-12 | 9 |
carbohydrate secreting cell | 5.14e-12 | 9 |
receptor cell | 6.89e-10 | 6 |
sensory epithelial cell | 6.89e-10 | 6 |
olfactory epithelial cell | 6.89e-10 | 6 |
synovial cell | 8.38e-10 | 3 |
fibrocyte | 1.97e-09 | 3 |
tendon cell | 1.97e-09 | 3 |
stromal cell | 7.14e-08 | 28 |
smooth muscle cell of the pulmonary artery | 2.17e-07 | 1 |
cardiac mesenchymal cell | 2.18e-07 | 4 |
migratory trunk neural crest cell | 2.18e-07 | 4 |
extracellular matrix secreting cell | 3.09e-07 | 15 |
fibroblast of tunica adventitia of artery | 3.49e-07 | 4 |
fibroblast of the aortic adventitia | 3.49e-07 | 4 |
skeletal muscle myoblast | 5.22e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 8.38e-10 | 3 |
layer of synovial tissue | 8.38e-10 | 3 |
synovial joint | 8.38e-10 | 3 |
synovial membrane of synovial joint | 8.38e-10 | 3 |
dense regular connective tissue | 1.97e-09 | 3 |
tendon | 1.97e-09 | 3 |
regular connective tissue | 1.97e-09 | 3 |
blood vessel layer | 1.65e-08 | 7 |
penis | 4.89e-08 | 1 |
intromittent organ | 4.89e-08 | 1 |
lateral plate mesenchyme | 4.89e-08 | 1 |
undifferentiated genital tubercle | 4.89e-08 | 1 |
somatopleure | 4.89e-08 | 1 |
lower lobe of right lung | 1.15e-07 | 1 |
right lung lobe | 1.15e-07 | 1 |
lower lobe of lung | 1.15e-07 | 1 |
lobe of lung | 1.15e-07 | 1 |
right lung | 1.15e-07 | 1 |
mitral valve | 2.31e-07 | 1 |
artery wall | 3.49e-07 | 4 |
tunica adventitia of artery | 3.49e-07 | 4 |
adventitia | 3.49e-07 | 4 |
tunica adventitia of blood vessel | 3.49e-07 | 4 |
aorta tunica adventitia | 3.49e-07 | 4 |
aorta wall | 3.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 5.22e-08 | 1 |