FFCP PHASE1:Hg19::chr9:91616472..91616491,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:91616472..91616491,+
|short_description=p3@S1PR3
|description=CAGE_peak_3_at_S1PR3_5end
|association_with_transcript=356bp_to_AB385149,AF022139,BC069579_5e...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1903 | |EntrezGene=1903 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=3167 | |HGNC=3167 | ||
|TSSclassifier=strong | |||
|UniProt=Q99500 | |UniProt=Q99500 | ||
|association_with_transcript=356bp_to_AB385149,AF022139,BC069579_5end | |||
|cluster_id=chr9:91616472..91616491,+ | |||
|description=CAGE_peak_3_at_S1PR3_5end | |||
|id=chr9:91616472..91616491,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;3.64e-13;3!CL:0002195;4.50e-09;2!CL:0002571;4.50e-09;2!CL:0000188;2.34e-07;9!CL:0002540;4.65e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,1.40e-13,3;CL:0002195,8.36e-09,2;CL:0002571,8.36e-09,2;CL:0000188,1.82e-07,9;CL:0002540,4.13e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.79e-09!659;UBERON:0000926!6.15e-08!448;UBERON:0004120!6.15e-08!448;UBERON:0006603!6.15e-08!448;UBERON:0000922!1.74e-07!612;UBERON:0000467!2.18e-07!625;UBERON:0000480!2.73e-07!626;UBERON:0002050!8.39e-07!605;UBERON:0005423!8.39e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;6.33e-14;5!UBERON:0002216;6.33e-14;5!UBERON:0011134;6.33e-14;5!UBERON:0002209;6.33e-14;5!UBERON:0002213;6.33e-14;5!UBERON:0007844;6.33e-14;5!UBERON:0011138;6.33e-14;5!UBERON:0001130;6.33e-14;5!UBERON:0001066;6.33e-14;5!UBERON:0001468;6.33e-14;5!UBERON:0002242;3.64e-13;3!UBERON:0001134;1.02e-11;16!UBERON:0002036;1.02e-11;16!UBERON:0004765;3.13e-09;26!UBERON:0004905;1.01e-08;8!UBERON:0000982;1.01e-08;8!UBERON:0004770;1.01e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,2.91e-14,5;UBERON:0002216,2.91e-14,5;UBERON:0011134,2.91e-14,5;UBERON:0002209,2.91e-14,5;UBERON:0002213,2.91e-14,5;UBERON:0005856,2.91e-14,5;UBERON:0005866,2.91e-14,5;UBERON:0005863,2.91e-14,5;UBERON:0007844,2.91e-14,5;UBERON:0011138,2.91e-14,5;UBERON:0001130,2.91e-14,5;UBERON:0001066,2.91e-14,5;UBERON:0001468,2.91e-14,5;UBERON:0002242,1.40e-13,3;UBERON:0003068,1.40e-13,3;UBERON:0002328,1.40e-13,3;UBERON:0004880,1.40e-13,3;UBERON:0004905,6.28e-09,8;UBERON:0000982,6.28e-09,8;UBERON:0004770,6.28e-09,8 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0.872338524100369,0,0.631719873426831,0.522371256399677,0,0,0.873765488520689,1.05506791291381,0.37129905888014,4.97096063591874,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0.485168122375632,0.232429036905685,0.822335776043652,2.16794459626573,0.28769239232215,0.512321413058201,0,0.689491361473237,1.93645405075148,0,0.564727018627814,0.272906150057846,0,0.918251677112708,0,0.639337125799041,0,0.199463657621632,0,0,0,0.622822248995575,0.502497330513487,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0.336985893439485,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0,0,0,0.579386075843295,0,0,0.0945348171640679,0.221729397462564,0.614843499851882,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,0,0.573673241497627,0,0,1.06748995729705,0.49333509683432,0.311211035399766,1.34710672069688,0.817309515567294,0.454072282934794,2.30470369792,0,0.624320153660641,0,0.448346041655403,0.23486899728753,0,0.280901613404497,0,0.491337269247072,0.309977343527296,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0.150238058906597,0.907457465280168,0.179389635688862,0,0.635795703478686,0,0.103052529238439,0,0.18611685633159,0,0,0.252433774244115,0.184099797284599,0.484938170456436,0.355009592516614,0.302256294682921,0.339121184620975,0,0,0,0.121973706129595,0,0.348581828608555,0,0,0.36497735907583,0,0,0,0,2.16563844500876,0.354920400119532,0.505754070234305,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0.441463099414651,0,0.171567810298526,0.219500570817251,0,0,0,0,1.03993478527958,0,0.811512834825538,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,1.30788020649984,0.36669142910475,0.129271715757778,0,2.535908257668,0.26593811658487,0,0.514414748524284,4.25547396069835,2.1313774321288,1.28680194292333,1.08524321078289,0,0.325736184293735,1.06617584622764,0,0.301439377059586,0,0,0,0,0,0,0,0,1.01346914667305,5.75333703141074,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0,2.4538298343828,1.50051156317903,1.89885516589815,1.87173775377726,1.96271887676878,0.315404830067869,0.35142424497814,0,0,0,0.664225598535437,0.368738337083406,0.60818530127658,0.783204629850962,0.343143423810856,0.206768026122887,0,0.213455115606889,0,1.66435439510497,2.11673205330776,0,0,0,0,0,0,0,0.925258162815933,0.177561725313127,0.0821271560138091,2.07701771673448,0.813472649219715,0,0.40101294060657,0,0.34444334449382,0.728364672026868,1.83574180943194,0,0.0770153371044148,0,0,0,0,0.340187410553031,0,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0,0.366277859273374,0.165018999841176,0,0,0,0,1.3864375540318,1.38153307253517,1.7918754422989,0,1.30515024522806,0.767039646744908,0,0.165284915360978,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0.869932992075073,0,0.572499546967965,0,0.316379424718726,0,0.255897791311334,0.855877976067841,0,0,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.842516912477962,0,0.974853958525138,0,0,2.96951407102797,0,0,1.32687795048244,0,0.578775534266688,0.655894752046633,0,0,0,0,0,0,0,0.422215270595328,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.422008249231538,0.333926115068718,0,0,1.19548792950642,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0.366390373607449,0,1.02193298195737,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0.234264445725339,0,0,0,1.18375320854817,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,0,0.290268993867255,0.146178634172371,0.164230914106418,1.16386819786103,0,0.90392296312213,0,0,0,0,0,0.640358984218058,0.999048047910651,0,0.114536596165916,0,0,0,0,0,0,0.509991088181609,0,0,0.136905378891993,0,0.859530882839914,0,0.279282401272254,0.229160424011684,0,0.399358000997982,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.262272940674991,0,0.179287339332845,0,0,0.662091970365432,0,0,0.864221491201268,0.653174720218818,0,0,0,0.113312091520126,0.146552233678082,0,0,0.26446520348538,0,0,0,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0.854183854313742,0,0.573409195690071,0.221858103073705,0,0,0,0,0.285465333544967,0.235265819698172,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0.251567901752575,1.77962244319307,0.457680136793847,3.32708032279126,0,0.147855149989634,0.318593534327405,0,0,0,0,0,0,0,0,0.545545977607678,0,0,1.59238355479446,0.400027764663154,0,0,0,0,0,0.260994291965212,0,0.231522474323834,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,2.33832412111851,0,0,0,0,0,1.41070377476274,0.6124909547064,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.235479278551542,0.157115589916002,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0.207216164163037,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,1.09279780251979,0,0.490296643507811,0,1.17785080268967,0.297046400327086,0,0,0.281951753939561,0.257831551894309,0,0,0,0,0,0,0.286679166302903,0.157771562193185,0,0,0.5290268405154,0.743990036333503,0,0.432626562123789,0,0.109265571963696,0,0,0,0,0.50141507858475,0.303114792872958,0,0,0,0,0.714193294391221,0.129177819672012,0.186224142887574,0,0.0636471582781649,0,0.435433495793923,0,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0,0 | |phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0.872338524100369,0,0.631719873426831,0.522371256399677,0,0,0.873765488520689,1.05506791291381,0.37129905888014,4.97096063591874,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0.485168122375632,0.232429036905685,0.822335776043652,2.16794459626573,0.28769239232215,0.512321413058201,0,0.689491361473237,1.93645405075148,0,0.564727018627814,0.272906150057846,0,0.918251677112708,0,0.639337125799041,0,0.199463657621632,0,0,0,0.622822248995575,0.502497330513487,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0.336985893439485,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0,0,0,0.579386075843295,0,0,0.0945348171640679,0.221729397462564,0.614843499851882,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,0,0.573673241497627,0,0,1.06748995729705,0.49333509683432,0.311211035399766,1.34710672069688,0.817309515567294,0.454072282934794,2.30470369792,0,0.624320153660641,0,0.448346041655403,0.23486899728753,0,0.280901613404497,0,0.491337269247072,0.309977343527296,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0.150238058906597,0.907457465280168,0.179389635688862,0,0.635795703478686,0,0.103052529238439,0,0.18611685633159,0,0,0.252433774244115,0.184099797284599,0.484938170456436,0.355009592516614,0.302256294682921,0.339121184620975,0,0,0,0.121973706129595,0,0.348581828608555,0,0,0.36497735907583,0,0,0,0,2.16563844500876,0.354920400119532,0.505754070234305,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0.441463099414651,0,0.171567810298526,0.219500570817251,0,0,0,0,1.03993478527958,0,0.811512834825538,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,1.30788020649984,0.36669142910475,0.129271715757778,0,2.535908257668,0.26593811658487,0,0.514414748524284,4.25547396069835,2.1313774321288,1.28680194292333,1.08524321078289,0,0.325736184293735,1.06617584622764,0,0.301439377059586,0,0,0,0,0,0,0,0,1.01346914667305,5.75333703141074,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0,2.4538298343828,1.50051156317903,1.89885516589815,1.87173775377726,1.96271887676878,0.315404830067869,0.35142424497814,0,0,0,0.664225598535437,0.368738337083406,0.60818530127658,0.783204629850962,0.343143423810856,0.206768026122887,0,0.213455115606889,0,1.66435439510497,2.11673205330776,0,0,0,0,0,0,0,0.925258162815933,0.177561725313127,0.0821271560138091,2.07701771673448,0.813472649219715,0,0.40101294060657,0,0.34444334449382,0.728364672026868,1.83574180943194,0,0.0770153371044148,0,0,0,0,0.340187410553031,0,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0,0.366277859273374,0.165018999841176,0,0,0,0,1.3864375540318,1.38153307253517,1.7918754422989,0,1.30515024522806,0.767039646744908,0,0.165284915360978,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0.869932992075073,0,0.572499546967965,0,0.316379424718726,0,0.255897791311334,0.855877976067841,0,0,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.842516912477962,0,0.974853958525138,0,0,2.96951407102797,0,0,1.32687795048244,0,0.578775534266688,0.655894752046633,0,0,0,0,0,0,0,0.422215270595328,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.422008249231538,0.333926115068718,0,0,1.19548792950642,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0.366390373607449,0,1.02193298195737,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0.234264445725339,0,0,0,1.18375320854817,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,0,0.290268993867255,0.146178634172371,0.164230914106418,1.16386819786103,0,0.90392296312213,0,0,0,0,0,0.640358984218058,0.999048047910651,0,0.114536596165916,0,0,0,0,0,0,0.509991088181609,0,0,0.136905378891993,0,0.859530882839914,0,0.279282401272254,0.229160424011684,0,0.399358000997982,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.262272940674991,0,0.179287339332845,0,0,0.662091970365432,0,0,0.864221491201268,0.653174720218818,0,0,0,0.113312091520126,0.146552233678082,0,0,0.26446520348538,0,0,0,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0.854183854313742,0,0.573409195690071,0.221858103073705,0,0,0,0,0.285465333544967,0.235265819698172,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0.251567901752575,1.77962244319307,0.457680136793847,3.32708032279126,0,0.147855149989634,0.318593534327405,0,0,0,0,0,0,0,0,0.545545977607678,0,0,1.59238355479446,0.400027764663154,0,0,0,0,0,0.260994291965212,0,0.231522474323834,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,2.33832412111851,0,0,0,0,0,1.41070377476274,0.6124909547064,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0.225630985047772,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.235479278551542,0.157115589916002,0,0,0.215927591218621,0,0.214429632529969,0,0,0,0,0.207216164163037,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,1.09279780251979,0,0.490296643507811,0,1.17785080268967,0.297046400327086,0,0,0.281951753939561,0.257831551894309,0,0,0,0,0,0,0.286679166302903,0.157771562193185,0,0,0.5290268405154,0.743990036333503,0,0.432626562123789,0,0.109265571963696,0,0,0,0,0.50141507858475,0.303114792872958,0,0,0,0,0.714193294391221,0.129177819672012,0.186224142887574,0,0.0636471582781649,0,0.435433495793923,0,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0,0 | ||
|short_description=p3@S1PR3 | |||
}} | }} |
Latest revision as of 04:21, 18 September 2015
Short description: | p3@S1PR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_S1PR3_5end |
Coexpression cluster: | NA |
Association with transcript: | 356bp_to_AB385149, AF022139, BC069579_5end |
EntrezGene: | S1PR3 |
HGNC: | 3167 |
UniProt: | Q99500 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 1.40e-13 | 3 |
hepatic stem cell | 8.36e-09 | 2 |
hepatic mesenchymal stem cell | 8.36e-09 | 2 |
cell of skeletal muscle | 1.82e-07 | 9 |
mesenchymal stem cell of the bone marrow | 4.13e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 2.91e-14 | 5 |
symphysis | 2.91e-14 | 5 |
nonsynovial joint | 2.91e-14 | 5 |
fibrous joint | 2.91e-14 | 5 |
cartilaginous joint | 2.91e-14 | 5 |
developing mesenchymal condensation | 2.91e-14 | 5 |
pre-cartilage condensation | 2.91e-14 | 5 |
cartilaginous condensation | 2.91e-14 | 5 |
cartilage element | 2.91e-14 | 5 |
post-cranial axial skeletal system | 2.91e-14 | 5 |
vertebral column | 2.91e-14 | 5 |
intervertebral disk | 2.91e-14 | 5 |
intervertebral joint | 2.91e-14 | 5 |
nucleus pulposus | 1.40e-13 | 3 |
axial mesoderm | 1.40e-13 | 3 |
notochord | 1.40e-13 | 3 |
chordamesoderm | 1.40e-13 | 3 |
articulation | 6.28e-09 | 8 |
skeletal joint | 6.28e-09 | 8 |
articular system | 6.28e-09 | 8 |