FFCP PHASE1:Mm9::chr13:60278479..60278509,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14451|HGNC=|MCL_coexpression_id=2080|UniProt=Q01721|association_with_transcript=118bp_to_ENSMUST00000109819_5end|description=CAGE_peak_4_at_Gas1_5end|id=chr13:60278479..60278509,-|ontology_enrichment_celltype=CL:0002453!9.65e-07!8|ontology_enrichment_celltype_v019_2=CL:0002453,1.13e-11,8;CL:0000128,4.16e-09,6;CL:0000126,4.16e-09,6;CL:0000127,4.16e-09,6;CL:0000333,6.64e-09,10;CL:0000095,6.64e-09,10;CL:0000243,6.64e-09,10;CL:0000123,6.64e-09,10;CL:0000125,6.64e-09,10;CL:0000030,6.64e-09,10;CL:0000339,6.64e-09,10;CL:0000680,3.77e-08,6;CL:0000187,3.77e-08,6;CL:0000056,3.77e-08,6;CL:0000222,8.03e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002102,2.04e-08,7;UBERON:0004710,2.04e-08,7;UBERON:0005419,2.04e-08,7;UBERON:0005417,2.04e-08,7;UBERON:0005729,2.04e-08,7;UBERON:0010708,3.45e-07,8;UBERON:0000026,5.19e-07,12;UBERON:0004708,5.19e-07,12;UBERON:0002101,5.19e-07,12;UBERON:0004357,5.19e-07,12;UBERON:0004347,5.19e-07,12;UBERON:0005732,5.19e-07,12;UBERON:0005733,5.19e-07,12|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0.0992909512008853,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.1761186246079,6.9950082541465,2.38610777810186,10.9534788208725,3.48840250208714,5.05278220289285,7.38833616482277,3.21968769738334,2.87505128729943,0,0,0,1.80081605225163,1.14613375975503,11.3447860301037,0.404632921719196,0,0,3.72728985276045,4.4464739805557,1.7997994345628,1.97773272513395,0.7104801149461,3.89480143673926,5.37905627450176,0.518448061542388,0.810035629990144,0.630974884054146,0.856952953211411,0,0.122490799214954,0.0958454710182364,0,0,0,0.153606533256243,0,0.182975287204819,0,0,0,0.30559649555362,0,0.427115042397309,0,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0.280888840263504,2.55645483867087,2.07828803682295,4.24007489412408,1.12674735821344,2.56652954828636,2.54805239706646,0,0,0,0,0.5709193985953,0.258937883647172,0.445326417194474,1.04091196059682,0.913396434936424,1.38369298353635,0,1.41106448562846,0.251333182659351,0.988779870937496,0.722996784599558,0.884610551949874,1.94120219936891,0.662524555381181,0,0,0,1.04723353406728,0.510914110417183,0,0,0,0.299581278809645,0,0,0.173824320192276,0,0,0,3.66621709861139,0.995255764880744,0.252722758433675,0,1.17108398666433,1.83921683546778,0.720248519221397,0.90422890701429,2.04109497453984,0.896796041993948,1.68663104207512,1.29351685369508,2.15567992932842,1.70195472151037,1.58356011747554,4.16471891612392,2.78047249225598,1.74126083261083,2.05782136407943,0.995171334092466,0,0,0,1.03562886267751,0.234526059981096,0.36012412292203,0.473489471170421,0.196764231747404,0.308534225774757,0.232533944750408,0.536546802799238,0.583826711835847,0.987359099480883,0.492502392237286,0.243206428637567,0.438599962275997,0,0.268412837520744,0.210289948564127,0.205809224758569,0,0.264450566663544,0.853153002140936,0.232236671860439,0.644337306610467,0.201683524623343,0.444756087689741,0.380451252225118,0.474529061544512,0.658795818896044,0.754005626400808,0.397912944082302,0.38992817423824,0.898819408654221,0,0,5.69003702859245,1.25673363870702,2.25415471346161,0.814605311381257,1.93952487167626,3.92760591385784,0.758838445491087,0.590440591918409,0.941992367048249,2.96153193412321,0.296452627087149,0,0.196558995113203,0,0,0,0.25462585178142,0,0.810676133875177,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0.234690248288502,0,0.238043640886014,0.585400943573396,0.157635144106191,0.221464689648775,0,0.491589944147214,0.345369963731791,0.433947175744535,0,0,1.47529281905711,1.10374698521893,0,0.117211686592203,3.27869890753351,1.26235463602186,0.631016438832513,1.17131623288992,1.07711698866399,0.477937595905104,0,0,0.404810701674894,0.584511715822624,0.790575555893047,0,0.709700426041343,2.49291845134157,4.72372182125371,1.31976098378028,0,0.242780636154981,1.51161778482376,0.188605079755898,0,0,0.258428293168221,0.727067458955011,1.06949213515416,0.316036757935816,1.05418608574999,0,0,0.36012218806262,0.129358683782755,0,0,0.356737635204141,0.658196082408484,0.608929898229199,0.469343416127421,0,0.220528398054962,0.49465875882444,3.55221738730992,0.904693873922338,0.358117032009409,0.492422699235184,0.582961673259701,0.18542530201051,0.170870880797853,0.619160603889667,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0.632671987162271,0,0.540026704109006,0.836353184057875,0.218362563746178,1.21377911746339,0.991841468704031,0.26175594198403,0.648074866458964,0,0,0.448549638131936,1.32366792365678,1.16670713006429,1.16243841129958,0.337912250981556,0.821500670520278,0.2604087696879,0.419437377702843,0,0.576060012515731,0.316011120628178,0.810900861160657,0.410843828659309,0.25984164595559,0,0,0.120195449519969,0,0,0.0762068066549998,0,0.194915761479505,0,0.116876902181569,0,0,0,0,2.31827512838629,1.31377732815827,1.64836461840539,1.07184189539533,0.501572104035363,0,0.460325236507177,0,0,0,0,0,0,0.453142408984205,0.51776031175182,0.207574695168353,1.59609949360412,1.36586884603307,0.729320151204882,0.419226325255965,0.551530525350042,0.888986911206461,0.618105171716683,0.320919209591815,0.758091635291392,0,0.377252682772152,0.37456602987953,0.512201219238954,0.689225627467359,0.476293691283074,0.695305955669133,0.578727661391115,1.64834360321323,0.441596760403192,0.685738504770831,0.532427418478012,0.715308569841963,0.872078499793971,0.564656282491984,0.507687647350059,0.182927972872773,0,0.814824683075171,0.561142271657738,0.830445126869219,0.492522411877817,0.409231043169689,0.464810523557898,1.15743966588685,0.999242311751784,0.935726433781634,2.14871054048298,3.06061331310149,1.10295709559758,0.695603506861264|short_description=p4@Gas1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14451 | |||
|HGNC= | |||
|MCL_coexpression_id=2080 | |||
|TSSclassifier=NA | |||
|UniProt=Q01721 | |||
|association_with_transcript=118bp_to_ENSMUST00000109819_5end | |||
|cluster_id=chr13:60278479..60278509,- | |||
|description=CAGE_peak_4_at_Gas1_5end | |||
|id=chr13:60278479..60278509,- | |||
|ontology_enrichment_celltype=CL:0002453!9.65e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,1.13e-11,8;CL:0000128,4.16e-09,6;CL:0000126,4.16e-09,6;CL:0000127,4.16e-09,6;CL:0000333,6.64e-09,10;CL:0000095,6.64e-09,10;CL:0000243,6.64e-09,10;CL:0000123,6.64e-09,10;CL:0000125,6.64e-09,10;CL:0000030,6.64e-09,10;CL:0000339,6.64e-09,10;CL:0000680,3.77e-08,6;CL:0000187,3.77e-08,6;CL:0000056,3.77e-08,6;CL:0000222,8.03e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002102,2.04e-08,7;UBERON:0004710,2.04e-08,7;UBERON:0005419,2.04e-08,7;UBERON:0005417,2.04e-08,7;UBERON:0005729,2.04e-08,7;UBERON:0010708,3.45e-07,8;UBERON:0000026,5.19e-07,12;UBERON:0004708,5.19e-07,12;UBERON:0002101,5.19e-07,12;UBERON:0004357,5.19e-07,12;UBERON:0004347,5.19e-07,12;UBERON:0005732,5.19e-07,12;UBERON:0005733,5.19e-07,12 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0.0992909512008853,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.1761186246079,6.9950082541465,2.38610777810186,10.9534788208725,3.48840250208714,5.05278220289285,7.38833616482277,3.21968769738334,2.87505128729943,0,0,0,1.80081605225163,1.14613375975503,11.3447860301037,0.404632921719196,0,0,3.72728985276045,4.4464739805557,1.7997994345628,1.97773272513395,0.7104801149461,3.89480143673926,5.37905627450176,0.518448061542388,0.810035629990144,0.630974884054146,0.856952953211411,0,0.122490799214954,0.0958454710182364,0,0,0,0.153606533256243,0,0.182975287204819,0,0,0,0.30559649555362,0,0.427115042397309,0,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0.280888840263504,2.55645483867087,2.07828803682295,4.24007489412408,1.12674735821344,2.56652954828636,2.54805239706646,0,0,0,0,0.5709193985953,0.258937883647172,0.445326417194474,1.04091196059682,0.913396434936424,1.38369298353635,0,1.41106448562846,0.251333182659351,0.988779870937496,0.722996784599558,0.884610551949874,1.94120219936891,0.662524555381181,0,0,0,1.04723353406728,0.510914110417183,0,0,0,0.299581278809645,0,0,0.173824320192276,0,0,0,3.66621709861139,0.995255764880744,0.252722758433675,0,1.17108398666433,1.83921683546778,0.720248519221397,0.90422890701429,2.04109497453984,0.896796041993948,1.68663104207512,1.29351685369508,2.15567992932842,1.70195472151037,1.58356011747554,4.16471891612392,2.78047249225598,1.74126083261083,2.05782136407943,0.995171334092466,0,0,0,1.03562886267751,0.234526059981096,0.36012412292203,0.473489471170421,0.196764231747404,0.308534225774757,0.232533944750408,0.536546802799238,0.583826711835847,0.987359099480883,0.492502392237286,0.243206428637567,0.438599962275997,0,0.268412837520744,0.210289948564127,0.205809224758569,0,0.264450566663544,0.853153002140936,0.232236671860439,0.644337306610467,0.201683524623343,0.444756087689741,0.380451252225118,0.474529061544512,0.658795818896044,0.754005626400808,0.397912944082302,0.38992817423824,0.898819408654221,0,0,5.69003702859245,1.25673363870702,2.25415471346161,0.814605311381257,1.93952487167626,3.92760591385784,0.758838445491087,0.590440591918409,0.941992367048249,2.96153193412321,0.296452627087149,0,0.196558995113203,0,0,0,0.25462585178142,0,0.810676133875177,0,0,0,0,0.252578877947112,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0.234690248288502,0,0.238043640886014,0.585400943573396,0.157635144106191,0.221464689648775,0,0.491589944147214,0.345369963731791,0.433947175744535,0,0,1.47529281905711,1.10374698521893,0,0.117211686592203,3.27869890753351,1.26235463602186,0.631016438832513,1.17131623288992,1.07711698866399,0.477937595905104,0,0,0.404810701674894,0.584511715822624,0.790575555893047,0,0.709700426041343,2.49291845134157,4.72372182125371,1.31976098378028,0,0.242780636154981,1.51161778482376,0.188605079755898,0,0,0.258428293168221,0.727067458955011,1.06949213515416,0.316036757935816,1.05418608574999,0,0,0.36012218806262,0.129358683782755,0,0,0.356737635204141,0.658196082408484,0.608929898229199,0.469343416127421,0,0.220528398054962,0.49465875882444,3.55221738730992,0.904693873922338,0.358117032009409,0.492422699235184,0.582961673259701,0.18542530201051,0.170870880797853,0.619160603889667,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0.632671987162271,0,0.540026704109006,0.836353184057875,0.218362563746178,1.21377911746339,0.991841468704031,0.26175594198403,0.648074866458964,0,0,0.448549638131936,1.32366792365678,1.16670713006429,1.16243841129958,0.337912250981556,0.821500670520278,0.2604087696879,0.419437377702843,0,0.576060012515731,0.316011120628178,0.810900861160657,0.410843828659309,0.25984164595559,0,0,0.120195449519969,0,0,0.0762068066549998,0,0.194915761479505,0,0.116876902181569,0,0,0,0,2.31827512838629,1.31377732815827,1.64836461840539,1.07184189539533,0.501572104035363,0,0.460325236507177,0,0,0,0,0,0,0.453142408984205,0.51776031175182,0.207574695168353,1.59609949360412,1.36586884603307,0.729320151204882,0.419226325255965,0.551530525350042,0.888986911206461,0.618105171716683,0.320919209591815,0.758091635291392,0,0.377252682772152,0.37456602987953,0.512201219238954,0.689225627467359,0.476293691283074,0.695305955669133,0.578727661391115,1.64834360321323,0.441596760403192,0.685738504770831,0.532427418478012,0.715308569841963,0.872078499793971,0.564656282491984,0.507687647350059,0.182927972872773,0,0.814824683075171,0.561142271657738,0.830445126869219,0.492522411877817,0.409231043169689,0.464810523557898,1.15743966588685,0.999242311751784,0.935726433781634,2.14871054048298,3.06061331310149,1.10295709559758,0.695603506861264 | |||
|short_description=p4@Gas1 | |||
}} |
Latest revision as of 20:17, 1 October 2015
Short description: | p4@Gas1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gas1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2080 |
Association with transcript: | 118bp_to_ENSMUST00000109819_5end |
EntrezGene: | Gas1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 1.13e-11 | 8 |
oligodendrocyte | 4.16e-09 | 6 |
macroglial cell | 4.16e-09 | 6 |
astrocyte | 4.16e-09 | 6 |
migratory neural crest cell | 6.64e-09 | 10 |
neuron associated cell | 6.64e-09 | 10 |
glial cell (sensu Vertebrata) | 6.64e-09 | 10 |
neuron associated cell (sensu Vertebrata) | 6.64e-09 | 10 |
glial cell | 6.64e-09 | 10 |
glioblast | 6.64e-09 | 10 |
glioblast (sensu Vertebrata) | 6.64e-09 | 10 |
muscle precursor cell | 3.77e-08 | 6 |
muscle cell | 3.77e-08 | 6 |
myoblast | 3.77e-08 | 6 |
mesodermal cell | 8.03e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
forelimb | 2.04e-08 | 7 |
pectoral appendage | 2.04e-08 | 7 |
pectoral appendage bud | 2.04e-08 | 7 |
forelimb bud | 2.04e-08 | 7 |
forelimb/pectoral fin field | 2.04e-08 | 7 |
pectoral complex | 3.45e-07 | 8 |
appendage | 5.19e-07 | 12 |
paired limb/fin | 5.19e-07 | 12 |
limb | 5.19e-07 | 12 |
paired limb/fin bud | 5.19e-07 | 12 |
limb bud | 5.19e-07 | 12 |
limb/fin field | 5.19e-07 | 12 |
limb field | 5.19e-07 | 12 |