FFCP PHASE1:Hg19::chr3:93747425..93747450,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=415117 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19300 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N4C7 | |||
|association_with_transcript=3bp_to_ENST00000315099,NM_001001850,uc003drh.1_5end | |||
|cluster_id=chr3:93747425..93747450,- | |||
|description=CAGE_peak_1_at_STX19_5end | |||
|id=chr3:93747425..93747450,- | |||
|ontology_enrichment_celltype=CL:0002076!2.67e-15!43;CL:0000223!2.22e-10!59;CL:0000066!4.69e-09!254;CL:0002251!3.07e-08!21;CL:0002368!1.48e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000415;2.05e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,2.09e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006595;3.26e-09;86!UBERON:0008947;8.46e-08;29!UBERON:0001041;2.26e-07;30 | |||
|ontology_enrichment_disease=DOID:1749!4.18e-15!14;DOID:305!5.70e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.16e-17;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.32e-18,14;DOID:305,1.30e-11,106;DOID:0050687,5.10e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.69e-21!169;UBERON:0000925!4.69e-21!169;UBERON:0006595!4.69e-21!169;UBERON:0001004!1.13e-19!72;UBERON:0001007!5.02e-18!155;UBERON:0001555!5.02e-18!155;UBERON:0007026!5.02e-18!155;UBERON:0004921!8.89e-15!129;UBERON:0004185!8.89e-15!129;UBERON:0000077!1.78e-13!130;UBERON:0005181!3.89e-12!35;UBERON:0000065!1.31e-11!53;UBERON:0007023!2.04e-11!115;UBERON:0005178!3.19e-11!34;UBERON:0002224!3.19e-11!34;UBERON:0000161!3.89e-11!35;UBERON:0000166!3.77e-10!21;UBERON:0002048!8.02e-10!22;UBERON:0000117!8.02e-10!22;UBERON:0000171!8.02e-10!22;UBERON:0000170!8.02e-10!22;UBERON:0005597!8.02e-10!22;UBERON:0000118!8.02e-10!22;UBERON:0000464!1.32e-09!104;UBERON:0001041!1.40e-09!98;UBERON:0005911!1.50e-08!82;UBERON:0000062!1.97e-08!511;UBERON:0002294!2.54e-08!7;UBERON:0001173!2.54e-08!7;UBERON:0004912!2.54e-08!7;UBERON:0005153!2.85e-08!37;UBERON:0000466!2.88e-08!126;UBERON:0005157!4.53e-08!51;UBERON:0000165!5.38e-08!28;UBERON:0000930!5.38e-08!28;UBERON:0000481!1.59e-07!347;UBERON:0000915!2.69e-07!52;UBERON:0004807!2.95e-07!28;UBERON:0008947!4.29e-07!38;UBERON:0003258!4.29e-07!38;UBERON:0001044!4.56e-07!6;UBERON:0003293!4.56e-07!6;UBERON:0003294!4.56e-07!6;UBERON:0010047!4.56e-07!6;UBERON:0000167!4.56e-07!6;UBERON:0000974!5.89e-07!10;UBERON:0003408!9.09e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.40e-11;33!UBERON:0002294;3.00e-11;7!UBERON:0001173;3.00e-11;7!UBERON:0001041;1.09e-10;14!UBERON:0000974;5.42e-09;6!UBERON:0005178;2.52e-08;34!UBERON:0002224;2.52e-08;34!UBERON:0001555;2.81e-08;54!UBERON:0001829;6.32e-08;2!UBERON:0005181;7.76e-08;35!UBERON:0002394;1.04e-07;4!UBERON:0003928;1.04e-07;4!UBERON:0000341;1.30e-07;2!UBERON:0003127;1.56e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,4.44e-17,145;UBERON:0001555,4.44e-17,145;UBERON:0007026,4.44e-17,145;UBERON:0004119,7.45e-16,160;UBERON:0000925,7.45e-16,160;UBERON:0006595,7.45e-16,160;UBERON:0004921,1.46e-15,118;UBERON:0001041,2.87e-11,87;UBERON:0001004,3.97e-10,74;UBERON:0005178,1.24e-09,34;UBERON:0002224,1.24e-09,34;UBERON:0005181,2.72e-09,35;UBERON:0002294,1.22e-08,9;UBERON:0001173,1.22e-08,9;UBERON:0004912,1.22e-08,9;UBERON:0001829,5.73e-08,2;UBERON:0000341,7.51e-08,2;UBERON:0003127,1.72e-07,2;UBERON:0000161,5.75e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.728590576585084,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0.329250856225877,1.1240175325762,0.201057944823262,1.01847289674383,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,0.503946384596579,0,0,0,0,0,0,0.207328115540772,0,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,1.10497186723076,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.960950336825531,1.78657797492418,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0,0,1.03558180854457,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,0,0,0,0.95497793895076,5.3453642549875,2.15012491469462,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0,0,0,1.25815691606258,1.61119057208048,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0.524759999977174,0,1.2517279311405,0.762760950878299,0.945550727071745,0,0,0,0,0,0,0.331737779793674,0.295547618953547,0.438770794307945,0,3.90386483980089,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46909527343233,0,0,0,2.38835424159016,1.83309043480088,0,0,0,0,0.802577647298789,0,0,4.10895699757388,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,2.95051555169723,0.195984794828755,1.13176968554523,1.57254001417827,0,0,0,0,5.23740689037465,0,1.35588444468319,0,0,0.126621591911757,1.36885967914362,2.40476460754601,0.640358984218058,0,1.72908500584927,0,0,0,0,2.35694034616795,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.449947783103001,0.77380195455795,0,0,0.315222829196793,0,0,0,1.91915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5059304909668,3.20362237703084,9.74666691617929,2.07119527673598,0,0,0,3.83004754662109,0,0,0,0,5.81100156125867,0,0.244052529803926,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,3.23887471053385,0.707818340086442,1.83428598521679,0,0,0,0,0.0752103283492573,0,0,0,0,2.06998520703863,0,0,0.206686796501184,0,0,4.38606213485746,1.48863353516788,0,3.70511040154826,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0.0657727735628491,0,0,1.41287567130925,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0.51215543128185,0.691259661814092,3.44181887056222,0,0,0.423387050190929,0.68732060563215,0,0,0.111855431797792,0,1.46301509978723,0,0,0,7.28566489588709,0,0,0,0.33883824611688,0,1.20770274853339,4.09023037972107,0,0.940634592723046,0,5.18488403623577,0,0,0,0,0,0,0,16.9626241675375,0.352894871715692,6.98099890195764,1.46067277649303,2.75237570042724,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.4779136199206,1.90451545170992,0.129177819672012,0.124149428591716,0,0.12729431655633,0,1.74173398317569,1.02669990325584,0.740872583160463,3.87299909120452,1.33064142618405,0.244209805832924,0,0,0,0,0.122241444182866,0.813792356631477,1.33151354837103,0,0 | |||
|short_description=p1@STX19 | |||
}} |
Latest revision as of 19:52, 19 September 2015
Short description: | p1@STX19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STX19_5end |
Coexpression cluster: | NA |
Association with transcript: | 3bp_to_ENST00000315099, NM_001001850, uc003drh.1_5end |
EntrezGene: | STX19 |
HGNC: | 19300 |
UniProt: | Q8N4C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 2.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
digestive system | 4.44e-17 | 145 |
digestive tract | 4.44e-17 | 145 |
primitive gut | 4.44e-17 | 145 |
endoderm-derived structure | 7.45e-16 | 160 |
endoderm | 7.45e-16 | 160 |
presumptive endoderm | 7.45e-16 | 160 |
subdivision of digestive tract | 1.46e-15 | 118 |
foregut | 2.87e-11 | 87 |
respiratory system | 3.97e-10 | 74 |
thoracic cavity element | 1.24e-09 | 34 |
thoracic cavity | 1.24e-09 | 34 |
thoracic segment organ | 2.72e-09 | 35 |
biliary system | 1.22e-08 | 9 |
biliary tree | 1.22e-08 | 9 |
biliary bud | 1.22e-08 | 9 |
major salivary gland | 5.73e-08 | 2 |
throat | 7.51e-08 | 2 |
open tracheal system trachea | 1.72e-07 | 2 |
orifice | 5.75e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.32e-18 | 14 |
carcinoma | 1.30e-11 | 106 |
cell type cancer | 5.10e-08 | 143 |